Integrating fine root diameter and watershed mapping to characterize rhizosphere hydrology

Rhizosphere - Tập 27 - Trang 100738 - 2023
Jeffrey M. Warren1, Keita F. DeCarlo2,3, Hassina Bilheux4, Jean-Christophe Bilheux4, Kelly Caylor5,6,3
1Environmental Sciences Division, Oak Ridge, National Laboratory, Oak Ridge, TN 37831, USA
2National Minerals Information Center, United States Geological Survey, Department of Interior, USA
3Department of Civil & Environmental Engineering, Princeton University, Princeton, NJ, 08544, USA
4Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
5Department of Geography, University of California, Santa Barbara, CA, 93106, USA
6Bren School of Environmental Science & Management, University of California, Santa Barbara, CA 93106, USA

Tài liệu tham khảo

Ahmed, 2014, Mucilage exudation facilitates root water uptake in dry soils, Funct. Plant Biol., 41, 1129, 10.1071/FP13330 Ahmed, 2016, Measurements of water uptake of maize roots: the key function of lateral roots, Plant Soil, 398, 59, 10.1007/s11104-015-2639-6 Ahmed, 2016, Drying of mucilage causes water repellency in the rhizosphere of maize: measurements and modelling, Plant Soil, 407, 161, 10.1007/s11104-015-2749-1 Ahmed, 2018, Hydraulic processes in roots and the rhizosphere pertinent to increasing yield of water-limited grain crops: a critical review, J. Exp. Bot., 69, 3255, 10.1093/jxb/ery183 Ahmed, 2018, Root type matters: measurement of water uptake by seminal, crown, and lateral roots in maize, J. Exp. Bot., 69, 1199, 10.1093/jxb/erx439 Aravena, 2014, Quantifying coupled deformation and water flow in the rhizosphere using X-ray microtomography and numerical simulations, Plant Soil, 376, 95, 10.1007/s11104-013-1946-z Bilheux, 2015, iMARS (iMaging Analysis Research Software), Phys. Proc., 69, 343, 10.1016/j.phpro.2015.07.048 Cai, 2022, Quantification of root water uptake and redistribution using neutron imaging: a review and future directions, Plant J., 111, 348, 10.1111/tpj.15839 Caldwell, 1989, Hydraulic lift – water efflux from upper roots improves effectiveness of water uptake by deep roots, Oecologia, 79, 1, 10.1007/BF00378231 Canarini, 2019, Root exudation of primary metabolites: mechanisms and their roles in plant responses to environmental stimuli, Front. Plant Sci., 10, 1 Carminati, 2009, When roots lose contact, Vadose Zone J., 8, 805, 10.2136/vzj2008.0147 Carminati, 2010, Dynamics of soil water content in the rhizosphere, Plant Soil, 332, 163, 10.1007/s11104-010-0283-8 Carminati, 2011, How the rhizosphere may favor water availability to roots, Vadose Zone J., 10, 988, 10.2136/vzj2010.0113 Carminati, 2012, A Model of Root Water Uptake Coupled with Rhizosphere Dynamics, Vadose Zone J., 11, 10.2136/vzj2011.0106 Carminati, 2013, Plasticity of rhizosphere hydraulic properties as a key for efficient utilization of scarce resources, Ann. Bot., 112, 277, 10.1093/aob/mcs262 Carminati, 2015, Water for carbon, carbon for water, Vadose Zone J., 15, 1, 10.2136/vzj2015.04.0060 Carminati, 2016, Biophysical rhizosphere processes affecting root water uptake, Ann. Bot., 118, 561, 10.1093/aob/mcw113 Cheng, 2012, Average soil water retention curves measured by neutron radiography, Soil Sci. Soc. Am. J., 76, 1184, 10.2136/sssaj2011.0313 Daly, 2018, Quantification of root water uptake in soil using X-ray computed tomography and image-based modelling, Plant Cell Environ., 41, 121, 10.1111/pce.12983 Darrah, 1993, The rhizosphere and plant nutrition: a quantitative approach, Plant Soil, 155/156, 1, 10.1007/BF00024980 Dexter, 1987, Compression of soil around roots, Plant Soil, 97, 401, 10.1007/BF02383230 Dhiman, 2018, Quantifying root water extraction after drought recovery using sub-mm in situ empirical data, Plant Soil, 424, 73, 10.1007/s11104-017-3408-5 Egerton-Warburton, 2008, Efflux of hydraulically lifted water from mycorrhizal fungal hyphae during imposed drought, Plant Signal. Behav., 3, 68, 10.4161/psb.3.1.4924 Feeney, 2006, Three-dimensional microorganization of the soil-root-microbe system, Microb. Ecol., 52, 151, 10.1007/s00248-006-9062-8 Foster, 1988, Microenvironment of soil microorganisms, Biol. Fertil. Soils, 6, 189, 10.1007/BF00260816 Garrigues, 2006, Water uptake by plant roots: I. formation and propagation of a water extraction front in mature root systems as evidenced by 2D light transmission imaging, Plant Soil, 283, 83, 10.1007/s11104-004-7903-0 Gregory, 2006, Roots, rhizosphere, and soil: the route to a better understanding of soil science?, Eur. J. Soil Sci., 57, 2, 10.1111/j.1365-2389.2005.00778.x Gregory, 1999, New approaches to studying chemical and physical changes in the rhizosphere: an overview, Plant Soil, 211, 1, 10.1023/A:1004547401951 Groleau-Renaud, 1998, Influence of plant morphology on root exudation of maize subjected to mechanical impedance in hydroponic conditions, Plant Soil, 201, 231, 10.1023/A:1004316416034 Hallett, 2003, Plant influence on rhizosphere hydraulic properties: direct measurements using a miniaturized infiltrometer, New Phytol., 157, 597, 10.1046/j.1469-8137.2003.00690.x Hartmann, 2008, Lorenz Hiltner, a pioneer in rhizosphere microbial ecology and soil bacteriology research, Plant Soil, 312, 7, 10.1007/s11104-007-9514-z Hayat, 2020, Quantification of hydraulic redistribution in maize roots using neutron radiography, Vadose Zone J., 19, 10.1002/vzj2.20084 Hiltner, 1904, Uber neuere Erfahrungen und Probleme auf dem Gebiete der Bodenbakteriologie unter besonderer Berucksichtigung der Grundungung und Brache, Arb. DLG, 98, 59 Hinsinger, 2009, Rhizosphere: biophysics, biogeochemistry and ecological relevance, Plant Soil, 321, 117, 10.1007/s11104-008-9885-9 Kang, 2013, Water calibration measurements for neutron radiography: application to water content quantification in porous media, Nucl. Instrum. Methods Phys. Res., Sect. A, 708, 24, 10.1016/j.nima.2012.12.112 Kang, 2014, Multiple pixel-scale soil water retention curves quantified by neutron radiography, Adv. Water Resour., 65, 1, 10.1016/j.advwatres.2013.12.004 Koebernick, 2014, In situ visualization and quantification of three-dimensional root system architecture and growth using X-ray computed tomography, Vadose Zone J., 13, 10.2136/vzj2014.03.0024 Koebernick, 2017, High-resolution synchrotron imaging shows that root hairs influence rhizosphere soil structure formation, New Phytol., 216, 124, 10.1111/nph.14705 Liu, 2018, A new method to optimize root order classification based on the diameter interval of fine root, Sci. Rep., 8, 2960, 10.1038/s41598-018-21248-6 MacFall, 1990, Observation of a water-depletion region surrounding loblolly pine roots by magnetic resonance imaging, Proc. Natl. Acad. Sci. USA, 87, 1203, 10.1073/pnas.87.3.1203 Marcacci, 2022, Influence of living grass roots and endophytic fungal hyphae on soil hydraulic properties, Rhizosphere, 22, 1 McCormack, 2015, Redefining fine roots improves understanding of below-ground contributions to terrestrial biosphere processes, New Phytol., 207, 505, 10.1111/nph.13363 Moradi, 2009, Neutron radiography as a tool for revealing root development in soil: capabilities and limitations, Plant Soil, 318, 243, 10.1007/s11104-008-9834-7 Moradi, 2011, Three-dimensional visualization and quantification of water content in the rhizosphere, New Phytol., 192, 653, 10.1111/j.1469-8137.2011.03826.x Moradi, 2012, Is the rhizosphere temporarily water repellent?, Vadose Zone J., 11, 10.2136/vzj2011.0120 Nakanishi, 2005, Water gradient profiles at bean plant roots determined by neutron beam analysis, J. Radioanal. Nucl. Chem., 264, 313, 10.1007/s10967-005-0713-x Naveed, 2019, Surface tension, rheology and hydrophobicity of rhizodeposits and seed mucilage influence soil water retention and hysteresis, Plant Soil, 437, 65, 10.1007/s11104-019-03939-9 Nazari, 2022, Soil, climate, and variety impact on quantity and quality of maize root mucilage exudation, Plant Soil Oades, 1978, Mucilages at the root surface, J. Soil Sci., 29, 1, 10.1111/j.1365-2389.1978.tb02025.x Oswald, 2008, Quantitative imaging of infiltration, root growth, and root water uptake via neutron radiography, Vadose Zone J., 7, 1035, 10.2136/vzj2007.0156 Pohlmeier, 2013, Magnetic resonance imaging techniques for visualization of root growth and root water uptake processes, 137 Poirier, 2018, Species and root traits impact macroaggregation in the rhizospheric soil of a Mediterranean common garden experiment, Plant Soil, 424, 289, 10.1007/s11104-017-3407-6 Razavi, 2016, Rhizosphere shape of lentil and maize: spatial distribution of enzyme activities, Soil Biol. Biochem., 96, 229, 10.1016/j.soilbio.2016.02.020 Read, 1986, Water relations of mycorrhizal fungi and their host plants, 287 Read, 2003, Plant roots release phospholipid surfactants that modify the physical and chemical properties of soil, New Phytol., 157, 315, 10.1046/j.1469-8137.2003.00665.x Rewald, 2011, A root is a root is a root? Water uptake rates of citrus root orders, Plant Cell Environ., 34, 33, 10.1111/j.1365-3040.2010.02223.x Roose, 2016, Challenges in imaging and predictive modeling of rhizosphere processes, Plant Soil, 407, 9, 10.1007/s11104-016-2872-7 Rudolph-Mohr, 2014, A multi-imaging approach to study the root-soil interface, Ann. Bot., 114, 1779, 10.1093/aob/mcu200 Rudolph-Mohr, 2021, Neutron computed laminography yields 3D root system architecture and complements investigations of spatiotemporal rhizosphere patterns, Plant Soil, 469, 489, 10.1007/s11104-021-05120-7 Schlüter, 2014, Image processing of multiphase images obtained via X-ray microtomography: a review, Water Resour. Res., 50, 3615, 10.1002/2014WR015256 Segal, 2008, Water uptake and hydraulics of the root hair rhizosphere, Vadose Zone J., 7, 1027, 10.2136/vzj2007.0122 Tötzke, 2017, Capturing 3D water flow in rooted soil by ultra-fast neutron tomography, Sci. Rep., 7, 6192, 10.1038/s41598-017-06046-w Tötzke, 2021, Three-dimensional in vivo analysis of water uptake and translocation in maize roots by fast neutron tomography, Sci. Rep., 11, 10.1038/s41598-021-90062-4 Tumlinson, 2008, Thermal neutron computed tomography of soil water and plant roots, Soil Sci. Soc. Am. J., 72, 1234, 10.2136/sssaj2007.0302 Venkatakrishnan, 2021, Convolutional neural network based non-iterative reconstruction for accelerating neutron tomography, Machine Learning Science and Technology, 2, 1, 10.1088/2632-2153/abde8e Warren, 2008, Hydraulic redistribution of water from Pinus ponderosa trees to seedlings: evidence for an ectomycorrhizal pathway, New Phytol., 178, 382, 10.1111/j.1469-8137.2008.02377.x Warren, 2013, Neutron imaging reveals internal plant water dynamics, Plant Soil, 366, 683, 10.1007/s11104-012-1579-7 Wells, 2003, Beyond the roots of young seedlings: the influence of age and order on fine root physiology, J. Plant Growth Regul., 21, 324, 10.1007/s00344-003-0011-1 Whalley, 2005, Structural differences between bulk and rhizosphere soil, Eur. J. Soil Sci., 56, 353, 10.1111/j.1365-2389.2004.00670.x York, 2016, The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots, J. Exp. Bot., 67, 3629, 10.1093/jxb/erw108 Zarebanadkouki, 2013, Where do roots take up water? Neutron radiography of water flow into the roots of transpiring plants growing in soil, New Phytol., 199, 1034, 10.1111/nph.12330 Zarebanadkouki, 2014, Visualization of root water uptake: quantification of deuterated water transport in roots using neutron radiography and numerical modeling, Plant Physiol., 166, 487, 10.1104/pp.114.243212 Zarebanadkouki, 2016, Hydraulic conductivity of the root-soil interface in sandy soil after drying and rewetting, Plant Soil, 398, 267, 10.1007/s11104-015-2668-1 Zarebanadkouki, 2018, Rhizosphere hydrophobicity limits root water uptake after drying and subsequent rewetting, Plant Soil, 1 Zwieniecki, 2003, Understanding the hydraulics of porous pipes: tradeoffs between water uptake and root length utilization, J. Plant Growth Regul., 21, 315, 10.1007/s00344-003-0008-9