Integrated miRNA-mRNA transcriptomic analysis of hepatopancreas reveals molecular strategies in Chinese mitten crab (Eriocheir sinensis) under acute nitrite stress

Springer Science and Business Media LLC - Tập 29 Số 3 - Trang 1015-1030 - 2021
Ling Fu1, Tianheng Gao2, Hong Jiang1, Yan Zhang1, Jianlin Pan1
1Freshwater Fisheries Research Institute of Jiangsu Province, Nanjing City, Jiangsu Province, 210017, China
2Institute of Marine Biology, College of Oceanography, Hohai University, Nanjing City, Jiangsu Province, 210098, China

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Tài liệu tham khảo

Bartel DP (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116:281–297

Boss IW, Renne R (2011) Viral miRNAs and immune evasion. Biochim Biophys Acta 1809:708–714

Chen JC, Cheng SY (1995) Changes of oxyhemocyanin and protein levels in the hemolymph of Penaeus japonicus exposed to ambient nitrite. Aquat Toxicol 33:215–226

Chen JF, Mandel EM, Thomson JM, Wu QL, Callis TE, Hammond SM, Conlon FL, Wang DZ (2006) The role of microRNA-1 and microRNA-133 in skeletal muscle proliferation and differentiation. Nat Genet 38:228–233

Cheng SY, Chen JC (2000) Accumulation of nitrite in the tissues of k exposed to elevated ambient nitrite after different time periods. Arch Environ Contam Toxicol 39:183–192

Cheng SY, Chen JC (2001) The time-course change of nitrogenous excretion in the Kuruma shrimp Penaeus japonicus following nitrite exposure. Aquat Toxicol 51:443e54

Cheng SY, Lee WC, Shieh LW, Chen JC (2004) Increased production and excretion of urea in the Kuruma shrimp (Marsupenaeus japonicus) exposed to combined environments of increased ammonia and nitrite. Arch Environ Contam Toxicol 47:352–362

Du J, Niu X, Wang Y et al (2015) MiR-146a-5p suppresses activation and proliferation of hepatic stellate cells in nonalcoholic fibrosing steatohepatitis through directly targeting Wnt1 and Wnt5a. Sci Rep 5:16163

Furtado PS, Valenzuela MAJ, Rodriguez-Fuentes G, Campos BR, Wasielesky W, Gaxiola G (2016) Chronic effect of nitrite on the rearing of the white shrimp Litopenaeus vannamei in two salinities. Mar Freshw Behav Physiol 49:201–211

Gui JF, Zhu ZY (2012) Molecular basis and genetic improvement of economically important traits in aquaculture animals. Chin Sci Bull 57(15):1751–1760

Guo H, Xian JA, Li B, Ye CX, Wang AL, Miao YT, Liao SA (2013a) Gene expression of apoptosis-related genes, stress protein and antioxidant enzymes in hemocytes of white shrimp Litopenaeus vannamei under nitrite stress. Comp Biochem Physiol C Toxicol Pharmacol 157:366–371

Guo H, Ye CX, Wang AL, Xian JA, Liao SA, Miao YT et al (2013b) Trascriptome analysis of the Pacific white shrimp Litopenaeus vannamei exposed to nitrite by RNA-seq. Fish Shellfish Immunol 35:2008–2016

Guo H, Xian JA, Wang AL (2016a) Analysis of digital gene expression profiling in hemocytes of white shrimp Litopenaeus vannamei under nitrite stress. Fish Shellfish Immunol 56:1–11

Guo L, Yu J, Liang T, Zou Q (2016b) miR-isomiRExp: a web-server for the analysis of expression of miRNA at the miRNA/isomiR levels. Sci Rep 6:23700

Hendgen-Cotta UB, Messiha D, Esfeld S, Deenen R, Rassaf T, Totzeck M (2017) Inorganic nitrite modulates miRNA signatures in acute myocardial in vivo ischemia/reperfusion. Free Radic Res 51(1):91–102

Hong M, Chen L, Qin JG, Sun X, Li E, Gu S, Yu N (2009) Acute tolerance and metabolic responses of Chinese mitten crab (Eriocheir sinensis) juveniles to ambient nitrite. Comp Biochem Physiol C Toxicol Pharmacol 149(3):419–426

Hong CY, Zheng JL, Chen TY, Chao HR, Lin YH (2018) PFLP-intensified disease resistance against bacterial soft rot through the MAPK pathway in PAMP-triggered immunity. Phytopathology. 108(12):1467–1474

Houri K, Mori T, Onodera Y, Tsujimoto T, Takehara T, Nakao S, Teramura T, Fukuda K (2020) miR-142 induces accumulation of reactive oxygen species (ROS) by inhibiting pexophagy in aged bone marrow mesenchymal stem cells. Sci Rep 10:3735

Huang Y, Liu N, Wang JP, Wang YQ, Yu XL, Wang ZB, Cheng XC, Zou Q (2012) Regulatory long non-coding RNA and its functions. J Physiol Biochem 68(4):611–618

Jensen FB (2003) Nitrite disrupts multiple physiological functions in aquatic animals. Comp Biochem Physiol 135A:9–24

Jin J, Wang Y, Wu Z, Hergazy A, Lan J, Zhao L, Liu X, Chen N, Lin L (2017) Transcriptomic analysis of liver from grass carp (Ctenopharyngodon idellus) exposed to high environmental ammonia reveals the activation of antioxidant and apoptosis pathways. Fish Shellfish Immunol 63:444–451

Koo JG, Kim SG, Jee JH, Kim JM, Bai SC, Kang JC (2005) Effects of ammonia and nitrite on survival, growth and moulting in juvenile tiger crab, Orithyia sinica (Linnaeus). Aquac Res 36(1):79–85

Larbi A, Douziech N, Fortin C, Linteau A, Dupuis G, Fulop T Jr (2005) The role of the mapk pathway alterations in gm-csf modulated human neutrophil apoptosis with aging. Immun Ageing 2(1):6

Lewis W, Morris D (1986) Toxicity of nitrite to fish: a review. Trans Am Fish Soc 115:183–195

Li XD, Dong SL, Lei YZ, Li YG (2007) The effect of stocking density of Chinese mitten crab Eriocheir sinensis on rice and crab seed yields in rice-crab culture systems. Aquaculture 273:487–493

Li S, Jia Z, Li X, Geng X, Sun J (2014) Calmodulin is a stress and immune response gene in Chinese mitten crab Eriocheir sinensis. Fish Shellfish Immunol 40(1):120–128

Lu M, Zhang P, Li C, Zhang W, Jin C, Han Q (2015) MiR-31 modulates coelomocytes ROS production via targeting p105 in Vibrio splendidus challenged sea cucumber Apostichopus japonicus in vitro and in vivo. Fish Shellfish Immunol 45(2):293–299

Madison BN, Wang YS (2006) Haematological responses of acute nitrite exposure in walleye (Sander vitreus). Aquat Toxicol 79:16–23

Mallasen M, Valenti WC (2006) Effect of nitrite on larval development of giant river prawn Macrobrachium rosenbergii. Aquaculture 261:1292–1298

Nizzoli D, Welsh DT, Fano EA, Viaroli P (2006) Impact of clam and mussel farming on benthic metabolism and nitrogen cycling, with emphasis on nitrate reduction pathways. Mar Ecol Prog Ser 315(8):151–165

Sharp LL, Schwarz DA, Bott CM, Marshall CJ, Hedrick SM (1997) The influence of the mapk pathway on t cell lineage commitment. Immunity 7(5):609–618

Song YN, Shi LL, Liu ZQ, Qiu GF (2014) Global analysis of the ovarian microRNA transcriptome: implication for miR-2 and miR-133 regulation of oocyte meiosis in the Chinese mitten crab, Eriocheir sinensis (Crustacea:Decapoda). BMC Genomics 15(1):547

Stefani G, Slack FJ (2008) Small non-coding RNAs in animal development. Nat Rev Mol Cell Biol 9:219–230

Sun S, Ge X, Xuan F, Zhu J, Yu N (2014) Nitrite-induced hepatotoxicity in blunt snout bream (Megalobrama amblycephala): the mechanistic insight from transcriptome to physiology analysis. Environ Toxicol Pharmacol 37(1):55–65

Tacon A, Cody J, Conquest L, Divakaran S, Forster I, Decamp O (2002) Effect of culture system on the nutrition and growth performance of Pacific white shrimp Litopenaeus vannamei (Boone) fed different diets. Aquac Nutr 8:121–137

Tian Z, Jiao C (2019) Molt-dependent transcriptome analysis of claw muscles in Chinese mitten crab Eriocheir sinensis. Genes Genomics 41(5):515–528

Tseng, Chen JC (2004) The immune response of white shrimp Litopenaeus vannamei and its susceptibility to Vibrio alginolyticus under nitrite stress. Fish Shellfsh Immunol 17:325–333

Urbich C, Kuehbacher A, Dimmeler S (2008) Role of microRNAs in vascular diseases, inflammation, and angiogenesis. Cardiovasc Res 79(4):581–588

Wang X, Shen Z, Wang C, Li E, Qin JG, Chen L (2019) Dietary supplementation of selenium yeast enhances the antioxidant capacity and immune response of juvenile Eriocheir Sinensis under nitrite stress. Fish Shellfish Immunol 87:22–31

Xia J, Liu P, Liu F, Lin G, Sun F, Tu R et al (2013) Analysis of stress-responsive transcriptome in the intestine of Asian sea bass (Lates calcarifer) using RNA-Seq. DNA Res 20:449–460

Xian J, Wang A, Chen X, Gou N, Miao Y, Liao S et al (2011) Cytotoxicity of nitrite on haemocytes of the tiger shrimp, Penaeus monodon, using flow cytometric analysis. Aquaculture 317240:e244

Xian JA, Wang AL, Hao XM, Miao YT, Li B, Ye CX, Liao SA (2012) In vitro toxicity of nitrite on haemocytes of the tiger shrimp, Penaeus monodon, using flow cytometric analysis. Comp Biochem Physiol C Toxicol Pharmacol 156(2):75–79

Xu J, Ji P, Wang B, Zhao L, Wang J, Zhao Z, Zhang Y, Li J, Xu P, Sun X (2013) Transcriptome sequencing and analysis of wild Amur Ide (Leuciscus waleckii) inhabiting an extreme alkaline-saline lake reveals insights into stress adaptation. PLoS One 8:e59703

Xu Z, Li T, Li E, Chen K, Ding Z, Qin J, Chen L, Ye J (2016) Comparative transcriptome analysis reveals molecular strategies of oriental river prawn Macrobrachium nipponense in response to acute and chronic nitrite stress. Fish Shellfish Immunol 48:254–265

Yoshizumi T, Imamura H, Taku T, Kuroki T, Kawaguchi A, Ishikawa K, Nakada K, Koshiba T (2017) Rlr-mediated antiviral innate immunity requires oxidative phosphorylation activity. Sci Rep 7(1):5379

Yu J, Ji X, Wang X, Li T, Wang H, Zeng Q (2019) Identification and characterization of differentially expressed genes in hepatopancreas of oriental river prawn Macrobrachium nipponense under nitrite stress. Fish Shellfish Immunol 87:144–154

Zhang BC, Zhang J, Sun L (2014) In-depth profiling and analysis of host and viral microRNAs in Japanese flounder (Paralichthys olivaceus) infected with megalocytivirus reveal involvement of microRNAs in host-virus interaction in teleost fish. BMC Genomics 15:878