Insights into the pathways of spread and potential origins of Dothistroma septosporum in Britain

Agapow, 2001, Indices of multilocus linkage disequilibrium, Mol. Ecol. Notes, 1, 101, 10.1046/j.1471-8278.2000.00014.x Anderson, 2008, The influence of family groups on inferences made with the program structure, Mol. Ecol. Resour., 8, 1219, 10.1111/j.1755-0998.2008.02355.x Barnes, 2008, Microsatellite markers for the red band needle blight pathogen, Dothistroma septosporum, Mol. Ecol. Resour., 8, 1026, 10.1111/j.1755-0998.2008.02142.x Barnes, 2016, Neotypification of Dothistroma septosporum and epitypification of D. pini, causal agents of Dothistroma needle blight of pine, For. Pathol., 46, 407, 10.1111/efp.12304 Barnes, 2014, Population structure and diversity of an invasive pine needle pathogen reflects anthropogenic activity, Ecol. Evol., 4, 3642, 10.1002/ece3.1200 Barrès, 2008, Genetic structure of the poplar rust fungus Melampsora larici-populina: evidence for isolation by distance in Europe and recent founder effects overseas, Infect. Genet. Evol., 8, 577, 10.1016/j.meegid.2008.04.005 Barrett, 1990, The genetics plant migration and colonization, 254 Barrett, 1991, Genetic and evolutionary consequences of small population size in plants: implications for conservation, 3 Bednářová, 2006, The host spectrum of Dothistroma needle blight Mycosphaerella pini E. Rostrup - new hosts of Dothistroma needle blight observed in the Czech Republic, J. For. Sci., 52, 30 Beebee, 2004 Bradshaw, 2004, Dothistroma (red-band) needle blight of pines and the dothistromin toxin: a review, For. Pathol., 34, 163, 10.1111/j.1439-0329.2004.00356.x Bradshaw, 2000, High levels of dothistromin toxin produced by the forest pathogen Dothistroma pini, Mycol. Res., 104, 325, 10.1017/S0953756299001367 Brasier, 2010, Plant pathology: sudden larch death, Nature, 466, 824, 10.1038/466824a Brasier, 2008, The biosecurity threat to the UK and global environment from international trade in plants, Plant Pathol., 57, 792, 10.1111/j.1365-3059.2008.01886.x British Mycological Society, 2014 Brown, 1980, Multilocus structure of natural populations of Hordeum spontaneum, Genetics, 96, 523, 10.1093/genetics/96.2.523 Brown, 2008, Red band needle blight of conifers in Britain, Res. Note - For. Comm. Butin, 1985, Teleomorph and anamorph development of Scirrhia pini Funk & Parker of needles from Pinus nigra arnold, 20 Butin, 1983, Dothistroma needle blight: a new pine disease in the German Federal Republic. Nachrichtenblatt Dtsch, Pflanzenschutzdienstes, 35, 129 Corander, 2008, Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations, BMC Bioinforma., 9, 539, 10.1186/1471-2105-9-539 Crooks, 1999, Lag times in population explosions of invasive species: causes and implications Dlugosch, 2008, Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions, Mol. Ecol., 17, 431, 10.1111/j.1365-294X.2007.03538.x Doroguine, 1911, Une maladie cryptogamique du pin, Bull. Trimest. Société Mycol. Fr., 27, 105 Drenkhan, 2013, Genetic diversity of Dothistroma septosporum in Estonia, Finland and Czech Republic, Eur. J. Plant Pathol., 136, 71, 10.1007/s10658-012-0139-6 Drenkhan, 2016, Global geographic distribution and host range of Dothistroma species: a comprehensive review, For. Pathol., 46, 408, 10.1111/efp.12290 Evanno, 2005, Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study, Mol. Ecol., 14, 2611, 10.1111/j.1365-294X.2005.02553.x Evans, 1984, The genus Mycosphaerella and its anamorphs Cercoseptoria, Dothistroma and Lecanosticta on pines, Mycol. Pap. Excoffier, 2010, ARLEQUIN suite ver 3.5: a new series of programs to perform population genetics analyses under linux and windows, Mol. Ecol. Resour., 10, 564, 10.1111/j.1755-0998.2010.02847.x Fabre, 2012, Is the emergence of Dothistroma needle blight of pine in France caused by the cryptic species Dothistroma pini?, Phytopathology, 102, 47, 10.1094/PHYTO-02-11-0036 Falush, 2003, Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies, Genetics, 164, 1567, 10.1093/genetics/164.4.1567 Farjon, 2001 Forestry Commission, 2015 Frantz, 2009, Using spatial Bayesian methods to determine the genetic structure of a continuously distributed population: clusters or isolation by distance?, J. Appl. Ecol., 46, 493, 10.1111/j.1365-2664.2008.01606.x Funk, 1966, Scirrhia pini n. sp., the perfect state of Dothistroma pini Hulbary, Can. J. Bot., 44, 1171, 10.1139/b66-128 Gibson, 1972, Dothistroma blight of Pinus radiata, Annu. Rev. Phytopathol., 10, 51, 10.1146/annurev.py.10.090172.000411 Groenewald, 2007, Characterization and distribution of mating type genes in the Dothistroma needle blight pathogens, Phytopathology, 97, 825, 10.1094/PHYTO-97-7-0825 Gross, 2014, Population structure of the invasive forest pathogen Hymenoscyphus pseudoalbidus, Mol. Ecol., 23, 2943, 10.1111/mec.12792 Grünwald, 2003, Analysis of genotypic diversity data for populations of microorganisms, Phytopathology, 93, 738, 10.1094/PHYTO.2003.93.6.738 Ivory, 1994, Records of foliage pathogens of Pinus species in tropical countries, Plant Pathol., 43, 511, 10.1111/j.1365-3059.1994.tb01585.x Jankovský, 2004, Dothistroma needle blight Mycosphaerella pini E. Rostrup, a new quarantine pathogen of pines in the CR, J. For. Sci., 50, 319 Jombart, 2008, adegenet: a R package for the multivariate analysis of genetic markers, Bioinformatics, 24, 1403, 10.1093/bioinformatics/btn129 Jombart, 2015 Jombart, 2010, Discriminant analysis of principal components: a new method for the analysis of genetically structured populations, BMC Genet., 11, 94, 10.1186/1471-2156-11-94 Jombart, 2008, Revealing cryptic spatial patterns in genetic variability by a new multivariate method, Heredity, 101, 92, 10.1038/hdy.2008.34 Kamvar, 2014, Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction, PeerJ, 2, e281, 10.7717/peerj.281 Karadžić, 2004, The distribution, hosts, epidemiology, impact and control of fungus Mycosphaerella pini E. Rostrup apud Munk. in Serbia, Glas. Šumar. Fak. Beogr., 90, 7, 10.2298/GSF0490007K Karadžić, 1989, Scirrhia pini Funk et Parker. Life cycle of the fungus in plantations of Pinus nigra Arn. in Serbia, Eur. J. For. Pathol., 19, 231, 10.1111/j.1439-0329.1989.tb00257.x Kopelman, 2015, Clumpak: a program for identifying clustering modes and packaging population structure inferences across K, Mol. Ecol. Resour., 15, 1179, 10.1111/1755-0998.12387 Latch, 2006, Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation, Conserv. Genet., 7, 295, 10.1007/s10592-005-9098-1 Lines, 1996 McDonald, 2002, Pathogen population genetics, evolutionary potential and durable resistance, Annu. Rev. Phytopathol., 40, 349, 10.1146/annurev.phyto.40.120501.101443 McDonald, 2014 Milgroom, 1996, Recombination and the multilocus structure of fungal populations, Annu. Rev. Phytopathol., 34, 457, 10.1146/annurev.phyto.34.1.457 Morelet, 1967, Une maladie des pins, nouvelle pour la France, due à: Scirrhia pini Funk et Parker, et à son stade conidien: Dothistroma pini Hulbary, Bull. Mens. Société Linn. Lyon, 36, 361, 10.3406/linly.1967.5954 Mullett, 2016, Persistence of Dothistroma septosporumon abscised pine needles and its implications for disease management, Plant Dis., 100, 1271, 10.1094/PDIS-11-15-1306-RE Mullett, 2015, Population structure and reproductive mode of Dothistroma septosporum in the Brittany peninsula of France, Eur. J. Plant Pathol., 143, 261, 10.1007/s10658-015-0678-8 Mullett, 2016, Infection of Cedrus species by Dothistroma septosporum, For. Pathol., 46, 551, 10.1111/efp.12214 Mullett, 2016, A reconsideration of natural dispersal distances of the pine pathogen Dothistroma septosporum, Plant Pathol., 65, 1462, 10.1111/ppa.12522 Munk, 1957, Danish pyrenomycetes. A preliminary flora, Dan. Bot. Ark., 17, 312 Murray, 1962, Dothistroma pini Hulbary: a new disease on pine in Britain, Forestry, 34, 57, 10.1093/forestry/35.1.57 Nei, 1978, Estimation of average heterozygosity and genetic distance from a small number of individuals, Genetics, 89, 583, 10.1093/genetics/89.3.583 Oksanen, 2013 Peakall, 2012, GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update, Bioinformatics, 28, 2537, 10.1093/bioinformatics/bts460 Perry, 2016, Substantial heritable variation for susceptibility to Dothistroma septosporum within populations of native British Scots pine (Pinus sylvestris), Plant Pathol., 10.1111/ppa.12528 Peterson, 1981, Research in the United States on Dothistroma needle blight of pines, Curr. Res. Conifer. Needle Dis., 25 Pritchard, 2000, Inference of population structure using multilocus genotype data, Genetics, 155, 945, 10.1093/genetics/155.2.945 Pritchard, 2010 Puechmaille, 2016, The program Structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem, Mol. Ecol. Resour., 16, 608, 10.1111/1755-0998.12512 R Development Core Team, 2013 Rivas, 2004, Founder effects and stochastic dispersal at the continental scale of the fungal pathogen of bananas Mycosphaerella fijiensis, Mol. Ecol., 13, 471, 10.1046/j.1365-294X.2003.02043.x Robert, 2012, Contrasting introduction scenarios among continents in the worldwide invasion of the banana fungal pathogen Mycosphaerella fijiensis: global phylogeography of M. fijiensis, Mol. Ecol., 21, 1098, 10.1111/j.1365-294X.2011.05432.x Rodríguez-Ramilo, 2012, The effect of close relatives on unsupervised Bayesian clustering algorithms in population genetic structure analysis, Mol. Ecol. Resour., 12, 873, 10.1111/j.1755-0998.2012.03156.x Rosenberg, 2004, DISTRUCT: a program for the graphical display of population structure, Mol. Ecol. Notes, 4, 137, 10.1046/j.1471-8286.2003.00566.x Rowe, 2007, Defining population boundaries: use of three Bayesian approaches with microsatellite data from British natterjack toads (Bufo calamita), Mol. Ecol., 16, 785, 10.1111/j.1365-294X.2006.03188.x Sakai, 2001, The population biology of invasive species, Annu. Rev. Ecol. Syst., 32, 305, 10.1146/annurev.ecolsys.32.081501.114037 Santini, 2013, Biogeographical patterns and determinants of invasion by forest pathogens in Europe, New Phytol., 197, 238, 10.1111/j.1469-8137.2012.04364.x Schwartz, 2009, Why sampling scheme matters: the effect of sampling scheme on landscape genetic results, Conserv. Genet., 10, 441, 10.1007/s10592-008-9622-1 Shannon, 1949 Stoddart, 1988, Genotypic diversity: estimation and prediction in samples, Genetics, 118, 705, 10.1093/genetics/118.4.705 Szpiech, 2008, ADZE: a rarefaction approach for counting alleles private to combinations of populations, Bioinforma. Oxf. Engl., 24, 2498, 10.1093/bioinformatics/btn478 Tubby, 2015, Pests and pathogen threats to plane (Platanus) in Britain, Arboric. J., 37, 85, 10.1080/03071375.2015.1066558 Tubby, 2010, Pests and diseases threatening urban trees under a changing climate, Forestry, 83, 451, 10.1093/forestry/cpq027 Welsh, 2009, The outbreak history of Dothistroma needle blight: an emerging forest disease in northwestern British Columbia, Canada, Can. J. For. Res. Rev. Can. Rech., 39, 2505, 10.1139/X09-159 Wingfield, 2015, Planted forest health: the need for a global strategy, Science, 349, 832, 10.1126/science.aac6674 Wingfield, 2008, Pitch canker caused by Fusarium circinatum – a growing threat to pine plantations and forests worldwide, Australas. Plant Pathol., 37, 319, 10.1071/AP08036 Woods, 2005, Is an unprecedented dothistroma needle blight epidemic related to climate change?, Bioscience, 55, 761, 10.1641/0006-3568(2005)055[0761:IAUDNB]2.0.CO;2 Zhan, 2003, The global genetic structure of the wheat pathogen Mycosphaerella graminicola is characterized by high nuclear diversity, low mitochondrial diversity, regular recombination, and gene flow, Fungal Genet. Biol., 38, 286, 10.1016/S1087-1845(02)00538-8