Influence of the early-life gut microbiota on the immune responses to an inhaled allergen
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Braman, 2006, The global burden of asthma, Chest, 130, 4S, 10.1378/chest.130.1_suppl.4S
Svenningsen, 2017, Asthma endotypes and an overview of targeted therapy for asthma, Front. Med., 4, 158, 10.3389/fmed.2017.00158
Wenzel, 2012, Asthma phenotypes: the evolution from clinical to molecular approaches, Nat. Med., 18, 716, 10.1038/nm.2678
Sugita, 2019, Key points for moving the endotypes field forward, 107
Choy, 2015, TH2 and TH17 inflammatory pathways are reciprocally regulated in asthma, Sci. Transl. Med., 7, 301ra129, 10.1126/scitranslmed.aab3142
Metsälä, 2015, Prenatal and post‐natal exposure to antibiotics and risk of asthma in childhood, Clin. Exp. Allergy, 45, 137, 10.1111/cea.12356
Aversa, 2020, Association of infant antibiotic exposure with childhood health outcomes, Mayo Clin. Proc., 96, 66, 10.1016/j.mayocp.2020.07.019
Kozyrskyj, 2007, Increased risk of childhood asthma from antibiotic use in early life, Chest, 131, 1753, 10.1378/chest.06-3008
Risnes, 2011, Antibiotic exposure by 6 months and asthma and allergy at 6 years: findings in a cohort of 1,401 US children, Am. J. Epidemiol., 173, 310, 10.1093/aje/kwq400
Patrick, 2020, Decreasing antibiotic use, the gut microbiota, and asthma incidence in children: evidence from population-based and prospective cohort studies, Lancet Respir. Med., 8, 1094, 10.1016/S2213-2600(20)30052-7
Ahmadizar, 2018, Early‐life antibiotic exposure increases the risk of developing allergic symptoms later in life: a meta‐analysis, Allergy, 73, 971, 10.1111/all.13332
Metsälä, 2013, Mother's and offspring's use of antibiotics and infant allergy to cow's milk, Epidemiology, 24, 303, 10.1097/EDE.0b013e31827f520f
Sun, 2015, Early-life antibiotic use is associated with wheezing among children with high atopic risk: a prospective European study, J. Asthma, 52, 647, 10.3109/02770903.2014.999284
Borbet, 2019, The role of the changing human microbiome in the asthma pandemic, J. Allergy Clin. Immunol., 144, 1457, 10.1016/j.jaci.2019.10.022
Thomas, 2006, Atopic wheezing and early life antibiotic exposure: a nested case–control study, Pediatr. allergy Immunol., 17, 184, 10.1111/j.1399-3038.2006.00389.x
Chai, 2012, Trends of outpatient prescription drug utilization in US children, 2002-2010, Pediatrics, 130, 23, 10.1542/peds.2011-2879
Hales, 2018, Trends in prescription medication use among children and adolescents-United States, 1999-2014, JAMA, 319, 2009, 10.1001/jama.2018.5690
Nobel, 2015, Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment, Nat. Commun., 6, 10.1038/ncomms8486
Ruiz, 2017, A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity, Nat. Commun., 8, 10.1038/s41467-017-00531-6
Bokulich, 2016, Antibiotics, birth mode, and diet shape microbiome maturation during early life, Sci. Transl. Med., 8, 343ra382, 10.1126/scitranslmed.aad7121
Kemppainen, 2017, Association between early-life antibiotic use and the risk of islet or celiac disease autoimmunity, JAMA Pediatr., 171, 1217, 10.1001/jamapediatrics.2017.2905
Lynn, 2018, Early-life antibiotic-driven dysbiosis leads to dysregulated vaccine immune responses in mice, Cell Host Microbe, 23, 653, 10.1016/j.chom.2018.04.009
Roubaud-Baudron, 2019, Long-term effects of early-life antibiotic exposure on resistance to subsequent bacterial infection, mBio, 10, e02820, 10.1128/mBio.02820-19
Zhang, 2018, Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity, Elife, 7, e37816, 10.7554/eLife.37816
Gasparrini, 2019, Persistent metagenomic signatures of early-life hospitalization and antibiotic treatment in the infant gut microbiota and resistome, Nat. Microbiol., 4, 2285, 10.1038/s41564-019-0550-2
Zhang, 2021, An antibiotic-impacted microbiota compromises the development of colonic regulatory T cells and predisposes to dysregulated immune responses, Mbio, 12, e03335, 10.1128/mBio.03335-20
Schulfer, 2018, Intergenerational transfer of antibiotic-perturbed microbiota enhances colitis in susceptible mice, Nat. Microbiol, 3, 234, 10.1038/s41564-017-0075-5
Piyadasa, 2016, Biosignature for airway inflammation in a house dust mite-challenged murine model of allergic asthma, Biol. Open, 5, 112, 10.1242/bio.014464
Schulfer, 2019, The impact of early-life sub-therapeutic antibiotic treatment (STAT) on excessive weight is robust despite transfer of intestinal microbes, ISME J., 13, 1280, 10.1038/s41396-019-0349-4
Ahmadizar, 2017, Early life antibiotic use and the risk of asthma and asthma exacerbations in children, Pediatr. Allergy Immunol., 28, 430, 10.1111/pai.12725
Arrieta, 2015, Early infancy microbial and metabolic alterations affect risk of childhood asthma, Sci. Transl. Med., 7, 307ra152, 10.1126/scitranslmed.aab2271
Cait, 2018, Microbiome-driven allergic lung inflammation is ameliorated by short-chain fatty acids, Mucosal Immunol., 11, 785, 10.1038/mi.2017.75
Ichinohe, 2011, Microbiota regulates immune defense against respiratory tract influenza A virus infection, Proc. Natl Acad. Sci. USA, 108, 5354, 10.1073/pnas.1019378108
Adami, 2018, Early-life antibiotics attenuate regulatory T cell generation and increase the severity of murine house dust mite-induced asthma, Pediatr. Res., 84, 426, 10.1038/s41390-018-0031-y
Almqvist, 2012, Antibiotics and asthma medication in a large register‐based cohort study—confounding, cause and effect, Clin. Exp. Allergy, 42, 104, 10.1111/j.1365-2222.2011.03850.x
Arrieta, 2018, Associations between infant fungal and bacterial dysbiosis and childhood atopic wheeze in a nonindustrialized setting, J. Allergy Clin. Immunol., 142, 424, 10.1016/j.jaci.2017.08.041
Taylor, 2018, Inflammatory phenotypes in patients with severe asthma are associated with distinct airway microbiology, J. Allergy Clin. Immunol., 141, 94, 10.1016/j.jaci.2017.03.044
Hanashiro, 2019, Schizophyllum commune induces IL-17-mediated neutrophilic airway inflammation in OVA-induced asthma model mice, Sci. Rep., 9, 1, 10.1038/s41598-019-55836-x
Wu, 2021, Follow-up study of airway microbiota in children with persistent wheezing, Respir. Res., 22, 213, 10.1186/s12931-021-01806-9
Abdel-Aziz, 2021, Sputum microbiome profiles identify severe asthma phenotypes of relative stability at 12 to 18 months, J. Allergy Clin. Immunol., 147, 123, 10.1016/j.jaci.2020.04.018
Arnold, 2011, Helicobacter pylori infection prevents allergic asthma in mouse models through the induction of regulatory T cells, J. Clin. Invest, 121, 3088, 10.1172/JCI45041
Kyburz, 2019, Transmaternal Helicobacter pylori exposure reduces allergic airway inflammation in offspring through regulatory T cells, J. Allergy Clin. Immunol., 143, 1496, 10.1016/j.jaci.2018.07.046
Engler, 2014, Effective treatment of allergic airway inflammation with Helicobacter pylori immunomodulators requires BATF3-dependent dendritic cells and IL-10, Proc. Natl Acad. Sci. USA, 111, 11810, 10.1073/pnas.1410579111
Barcik, 2020, The role of lung and gut microbiota in the pathology of asthma, Immunity, 52, 241, 10.1016/j.immuni.2020.01.007
Fujimura, 2014, House dust exposure mediates gut microbiome Lactobacillus enrichment and airway immune defense against allergens and virus infection, Proc. Natl Acad. Sci. USA, 111, 805, 10.1073/pnas.1310750111
Wu, 2016, Effects of immunomodulatory supplementation with Lactobacillus rhamnosus on airway inflammation in a mouse asthma model, J. Microbiol. Immunol. Infect., 49, 625, 10.1016/j.jmii.2014.08.001
Louis, 2009, Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine, FEMS Microbiol. Lett., 294, 1, 10.1111/j.1574-6968.2009.01514.x
Roduit, 2019, High levels of butyrate and propionate in early life are associated with protection against atopy, Allergy, 74, 799, 10.1111/all.13660
Yip, 2021, Butyrate shapes immune cell fate and function in allergic asthma, Front. Immunol., 12, 628453, 10.3389/fimmu.2021.628453
Altobelli, 2019, Helicobacter pylori VacA targets myeloid cells in the gastric lamina propria to promote peripherally induced regulatory T-cell differentiation and persistent infection, MBio, 10, e00261, 10.1128/mBio.00261-19
Abrahamsson, 2014, Low gut microbiota diversity in early infancy precedes asthma at school age, Clin. Exp. Allergy, 44, 842, 10.1111/cea.12253
Cahenzli, 2013, Intestinal microbial diversity during early-life colonization shapes long-term IgE levels, Cell Host Microbe, 14, 559, 10.1016/j.chom.2013.10.004
Lynch, 2014, Effects of early-life exposure to allergens and bacteria on recurrent wheeze and atopy in urban children, J. Allergy Clin. Immunol., 134, 593, 10.1016/j.jaci.2014.04.018
Turnbaugh, 2006, An obesity-associated gut microbiome with increased capacity for energy harvest, Nature, 444, 1027, 10.1038/nature05414
Ivanov, 2009, Induction of intestinal Th17 cells by segmented filamentous bacteria, Cell, 139, 485, 10.1016/j.cell.2009.09.033
Dubourg, 2013, High-level colonisation of the human gut by Verrucomicrobia following broad-spectrum antibiotic treatment, Int. J. Antimicrobial Agents, 41, 149, 10.1016/j.ijantimicag.2012.10.012
Derrien, 2004, Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium, Int. J. Syst. Evolut. Microbiol., 54, 1469, 10.1099/ijs.0.02873-0
Bisgaard, 2012, Interaction between asthma and lung function growth in early life, Am. J. Respir. Crit. Care Med., 185, 1183, 10.1164/rccm.201110-1922OC
Stokholm, 2018, Maturation of the gut microbiome and risk of asthma in childhood, Nat. Commun., 9
Zheng, 2020, Interaction between microbiota and immunity in health and disease, Cell Res., 30, 1, 10.1038/s41422-020-0332-7
Reuter, 2019, Coincident airway exposure to low-potency allergen and cytomegalovirus sensitizes for allergic airway disease by viral activation of migratory dendritic cells, PLoS Pathog., 15, e1007595, 10.1371/journal.ppat.1007595
McGovern, 2013, Evaluation of respiratory system mechanics in mice using the forced oscillation technique, J. Vis. Exp., 75, e50172
Walters, 2016, Improved bacterial 16S rRNA gene (V4 and V4-5) and fungal internal transcribed spacer marker gene primers for microbial community surveys, mSystems, 1, e00009, 10.1128/mSystems.00009-15
Bolyen, 2019, Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2, Nat. Biotechnol., 37, 852, 10.1038/s41587-019-0209-9
Callahan, 2016, DADA2: high-resolution sample inference from Illumina amplicon data, Nat. Methods, 13, 581, 10.1038/nmeth.3869
Katoh, 2013, MAFFT multiple sequence alignment software version 7: improvements in performance and usability, Mol. Biol. Evol., 30, 772, 10.1093/molbev/mst010
Love, 2014, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2, Genome Biol., 15, 10.1186/s13059-014-0550-8
Wipperman, 2017, Antibiotic treatment for Tuberculosis induces a profound dysbiosis of the microbiome that persists long after therapy is completed, Sci. Rep., 7, 10.1038/s41598-017-10346-6
Davis, 2018, Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data, Microbiome, 6, 10.1186/s40168-018-0605-2