Influence of different litter materials on cecal microbiota colonization in broiler chickens

Aktan, 2004, Dried rose (Rosa damascena Mill.) dreg: An alternative litter material in broiler production, S. Afr. J. Anim. Sci., 34, 75, 10.4314/sajas.v34i2.3809 Amit-Romach, 2004, Microflora ecology of the chicken intestine using 16S ribosomal DNA primers, Poult. Sci., 83, 1093, 10.1093/ps/83.7.1093 Apajalahti, 2001, Percent G+C profiling accurately reveals diet-related differences in the gastrointestinal microbial community of boiler chickens, Appl. Environ. Microbiol., 67, 5656, 10.1128/AEM.67.12.5656-5667.2001 Atapattu, 2007, The use of refused tea as litter material for boiler chickens, Poult. Sci., 86, 968, 10.1093/ps/86.5.968 Barnes, 1979, The intestinal microflora of poultry and game birds during life and after storage, J. Appl. Bacteriol., 46, 407, 10.1111/j.1365-2672.1979.tb00838.x Bennett, 2005, Effect of addition of hydrated lime to litter on recovery of selected bacteria and poult performance, J. Appl. Poult. Res., 14, 721, 10.1093/japr/14.4.721 Bray, 1957, An ordination of the upland forest communities of Southern Wisconsin, Ecol. Monogr., 27, 325, 10.2307/1942268 Burke, 1993, Newspaper as litter material and its effects on the performance of broilers, J. Appl. Poult. Res., 2, 154, 10.1093/japr/2.2.154 Carlile, 1984, Ammonia in poultry houses: A literature review, World’s Poult. Sci. J., 40, 99, 10.1079/WPS19840008 Clarke, 1993, Non-parametric multivariate analyses of changes in community structure, Aust. J. Ecol., 18, 117, 10.1111/j.1442-9993.1993.tb00438.x Collett, 2006, Wet litter: Its causes and prevention and the role of nutrition, 195 Corrier, 1993, Protective effect of used poultry litter and lactose in the feed ration on Salmonella enteritidis colonization of Leghorn chicks and hens, Avian Dis., 37, 47, 10.2307/1591456 De Angelis, 2006, Selection of potential probiotic lactobacilli from pig feces to be used as additives in pelleted feeding, Res. Microbiol., 157, 792, 10.1016/j.resmic.2006.05.003 Dunbar, 2001, Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communities, Appl. Environ. Microbiol., 67, 190, 10.1128/AEM.67.1.190-197.2001 Fries, 2005, Microflora of two different types of poultry litter, Br. Poult. Sci., 46, 668, 10.1080/00071660500395483 Garrido, 2004, Acidified litter benefits the intestinal flora balance of broiler chickens, Appl. Environ. Microbiol., 70, 5208, 10.1128/AEM.70.9.5208-5213.2004 Gong, 2002, Diversity and phylogenetic analysis of bacteria in the mucosoa of chicken ceca and comparison with bacteria in the cecal lumen, FEMS Microbiol. Lett., 208, 1, 10.1111/j.1574-6968.2002.tb11051.x Gong, 2002, Molecular analysis of bacterial populations in the ileum of broiler chickens and comparison with bacteria in the cecum, FEMS Microbiol. Ecol., 41, 171, 10.1111/j.1574-6941.2002.tb00978.x Grimes, 2006, Use of a litter material made from cotton waste, gypsum, and old newsprint for rearing broiler chickens, Poult. Sci., 85, 563, 10.1093/ps/85.3.563 Grimes, 2002, Some alternative litter materials used for growing broiler and turkeys, World’s Poult. Sci. J., 58, 515, 10.1079/WPS20020037 Hermes, 2004, Effect of feeding endophyte-infected feed and bedding on the performace of broilers, J. Appl. Poult. Res., 13, 71, 10.1093/japr/13.1.71 Hetland, 2007, Inclusion of dust bathing materials affects nutrient digestion and gut physiology of layers, J. Appl. Poult. Res., 16, 22, 10.1093/japr/16.1.22 Hume, 2003, Poultry digestive microflora biodiversity as indicated by denaturing gradient gel electrophoresis, Poult. Sci., 82, 1100, 10.1093/ps/82.7.1100 Ivanov, 2001, Treatment of broiler litter with organic acids, Res. Vet. Sci., 70, 169, 10.1053/rvsc.2001.0454 Kelly, 2005, Commensal gut bacteria: Mechanisms of immune modulation, Trends Immunol., 26, 326, 10.1016/j.it.2005.04.008 Knarreborg, 2002, Effects of dietary fat source and subtherapeutic levels of antibiotic on the bacterial community in the ileum of broiler chickens at various ages, Appl. Environ. Microbiol., 68, 5918, 10.1128/AEM.68.12.5918-5924.2002 Lan, 2002, Phylogenetic analysis of cecal microbiota in chicken by the use of 16S rDNA clone libraries, Microbiol. Immunol., 46, 371, 10.1111/j.1348-0421.2002.tb02709.x Lane, 1991, 16S/23S rRNA sequencing, 115 Line, 2002, Campylobacter and Salmonella populations associated with chickens raised on acidified litter, Poult. Sci., 81, 1473, 10.1093/ps/81.10.1473 Lovanh, 2007, Spatial shifts in microbial population structure within poultry litter associated with physicochemical properties, Poult. Sci., 86, 1840, 10.1093/ps/86.9.1840 Lu, 2003, Diversity and succession of the intestinal bacterial communities of the maturing boiler chicken, Appl. Environ. Microbiol., 69, 6816, 10.1128/AEM.69.11.6816-6824.2003 Lu, 2003, Evaluation of broiler litter with reference to the microbial composition as assessed by using 16S rRNA and functional gene markers, Appl. Environ. Microbiol., 69, 901, 10.1128/AEM.69.2.901-908.2003 Malone, 1982, Recycled paper products as broiler litter, Poult. Sci., 61, 2161, 10.3382/ps.0612161 Malone, 1983, Influence of litter type and size on broiler performance. 2. Processed newspaper litter particle size and management, Poult. Sci., 62, 1747, 10.3382/ps.0621747 Malone, 1983, Influence of litter type and size on broiler performance. 1. Factors affecting litter consumption, Poult. Sci., 62, 1741, 10.3382/ps.0621741 Martin, 1998, Microbiological survey of Georgia poultry litter, J. Appl. Poult. Res., 7, 90, 10.1093/japr/7.1.90 Mead, 1989, Microbes of the avian cecum: Types present and substates utilized, J. Exp. Zool., 3, 48, 10.1002/jez.1402520508 Milling, 2005, The use of wood in practice—A hygienic risk?, Holz als Roh-und Werkstoff, 63, 463, 10.1007/s00107-005-0064-x Muyzer, 1995, Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments, Arch. Microbiol., 164, 165, 10.1007/BF02529967 NRC, 1994 Omeira, 2006, Microbiological and chemical properties of litter from different chicken types and production systems, Sci. Total Environ., 367, 156, 10.1016/j.scitotenv.2006.02.019 Osborn, 2000, An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics, Environ. Microbiol., 2, 39, 10.1046/j.1462-2920.2000.00081.x Reece, 1980, Ammonia in the atmosphere during brooding affects performance of broiler chickens, Poult. Sci., 59, 486, 10.3382/ps.0590486 Runge, 2007 Schoyen, 2007, Growth performance and ileal and total tract amino acid digestibility in broiler chickens fed diets containing bacterial protein produced on natural gas, Poult. Sci., 86, 87, 10.1093/ps/86.1.87 Stirling, 2004, Combining an initial risk assessment process with DNA assays to improve prediction of soilborne diseases caused by root-knot menatode (Meloidogyne spp.) and Fusarium oxysporum f. sp. lycopersici in the Queensland tomato industry, Australas. Plant Pathol., 33, 285, 10.1071/AP04004 Swift, 2000, Quorum sensing within the gut ecosystem, Microb. Ecol. Health Dis., 12, 81 Terzich, 2000, Survey of pathogens in poultry litter in the United States, J. Appl. Poult. Res., 9, 287, 10.1093/japr/9.3.287 Torok, 2008, Application of methods for identifying broiler chicken gut bacterial species linked with increased energy metabolism, Appl. Environ. Microbiol., 74, 783, 10.1128/AEM.01384-07 van der Klis, 2007, Wet litter problems relate to host-microbiota interactions, World Poult., 23, 20 Willis, 1991, Decreased Campylobacter jejuni shedding in broilers fed dried poultry waste, Poult. Sci., 70, 132 Willis, 1987, Effect of an evaporative cooling and dust control system on rearing environment and performance of male broiler chickens, Poult. Sci., 66, 1590, 10.3382/ps.0661590 Zhu, 2002, 16S rRNA-based analysis of microbiota from the cecum of boiler chickens, Appl. Environ. Microbiol., 68, 124, 10.1128/AEM.68.1.124-137.2002