Inferring ethnicity from mitochondrial DNA sequence

Shriver MD, Smith MW, Jin L, Marcini A, Akey JM, Deka R, Ferrell RE: Ethnic-affiliation estimation by use of population-specific DNA markers. American Journal of Human Genetics. 1997, 60 (4): 957-964.

Phillips C, Salas A, Sánchez J, Fondevila M, Gómez-Tato A, Álvarez Dios J, Calaza M, de Cal MC, Ballard D, Lareu M, Carracedo A: Inferring ancestral origin using a single multiplex assay of ancestry-informative marker SNPs. Forensic Science International:Genetics. 2007, 1 (3-4): 273-280. 10.1016/j.fsigen.2007.06.008.

Connor A, Stoneking M: Assessing ethnicity from human mitochondrial DNA types determined by hybridization with sequence-specific oligonucleotides. Journal of forensic sciences. 1994, 39 (6): 1360-1371.

Rohl A, Brinkmann B, Forster L, Forster P: An annotated mtDNA database. International Journal of Legal Medicine. 2001, 115 (29): 39-

Egeland T, Bøvelstad HM, Storvik GO, Salas A: Inferring the most likely geographical origin of mtDNA sequence profiles. Annals of human genetics. 2004, 68 (5): 461-471. 10.1046/j.1529-8817.2004.00109.x.

Hastie T, Tibshirani R, Friedman JH: The Elements of Statistical Learning. 2009, Springer, 2

Monson KL, Miller KWP, Wilson MR, DiZinno JA, Budowle B: The mtDNA Population Database: An Integrated Software and Database Resource for Forensic Comparison. Forensic Science Communications. 2002, 4 (2):

Behar DM, Rosset S, Blue-Smith J, Balanovsky O, Tzur S, Comas D, Mitchell RJ, Quintana-Murci L, Tyler-Smith C, Wells RS, Consortium TG: The Genographic Project Public Participation Mitochondrial DNA Database. PLoS Genet. 2007, 3 (6): e104-10.1371/journal.pgen.0030104.

Dibennardo R, Taylor JV: Multiple discriminant function analysis of sex and race in the postcranial skeleton. American Journal of Physical Anthropology. 1983, 61 (3): 305-314. 10.1002/ajpa.1330610305.

İşcan MY: A Topical Guide to the American Journal of Physical Anthropology: Volumes 22-53 (1964-1980). 1983, Wiley-Liss

Bamshad M, Wooding S, Salisbury BA, Stephens JC: Deconstructing the relationship between genetics and race. Nature Reviews Genetics. 2004, 5 (8): 598-609. 10.1038/nrg1401.

Vapnik V: Statistical Learning Theory. 1998, Wiley

Chang CC, Lin CJ: LIBSVM: a library for support vector machines. 2001, [ http://www.csie.ntu.edu.tw/~cjlin/libsvm ]

Knerr S, Personnaz L, Dreyfus G: Single-layer learning revisited: a stepwise procedure for building and training a neural network. Neurocomputing: Algorithms Architectures and Application. Edited by: Fogelman J, Springer-Verlag. 1990

Fraley C, Raftery AE: Enhanced Model-Based Clustering, Density Estimation, and Discriminant Analysis Software: MCLUST. Journal of Classification. 2003, 20 (2): 263-286. 10.1007/s00357-003-0015-3.

M Behar D, Rosset S, Blue-Smith J, Balanovsky O, Tzur S, Comas D, Mitchell RJ, Quintana-Murci L, Tyler-Smith C, Wells RS, Consortium TG: Correction: The Genographic Project Public Participation Mitochondrial DNA Database. PLoS Genet. 2007, 3 (9): e169-10.1371/journal.pgen.0030169.

Lewis DD: Evaluating text categorization. In Proceedings of Speech and Natural Language Workshop. 1991, Morgan Kaufmann, 312-318. abstract_only.

Tzen J, Hsu H, MN W: Redefinition of hypervariable region I in mitochondrial DNA control region and comparing its diversity among various ethnic groups. Mitochondrion. 2008, 8 (2): 146-154. 10.1016/j.mito.2007.11.002.

Di Bernardo G, Del Gaudio S, Galderisi U, Cipollaro M: 2000 Year-old ancient equids: an ancient-DNA lesson from pompeii remains. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 2004, 302B (6): 550-556. 10.1002/jez.b.21017.

Schlecht J, Kaplan ME, Barnard K, Karafet T, Hammer MF, Merchant NC: Machine-Learning Approaches for Classifying Haplogroup from Y Chromosome STR Data. PLoS Comput Biol. 2008, 4 (6): e1000093-10.1371/journal.pcbi.1000093.

Schelleman H, Limdi NA, Kimmel SE: Ethnic differences in warfarin maintenance dose requirement and its relationship with genetics. Pharmacogenomics. 2008, 9 (9): 1331-1346. 10.2217/14622416.9.9.1331.

Yancy CW: Race-based therapeutics. Current Hypertension Reports. 2008, 10 (4): 276-285. 10.1007/s11906-008-0052-8.

Bandelt HJ, Lahermo P, Richards M, Macaulay V: Detecting errors in mtDNA data by phylogenetic analysis. International Journal of Legal Medicine. 2001, 115 (2): 64-69. 10.1007/s004140100228.

Bandelt H, Quintana-Murci L, Salas A, Macaulay V: The fingerprint of phantom mutations in mitochondrial DNA data. American journal of human genetics. 2002, 71 (5): 1150-1160. 10.1086/344397.

Forster P: To err is human. Annals of Human Genetics. 2003, 67: 2-4. 10.1046/j.1469-1809.2003.00002.x.

Dennis C: Error reports threaten to unravel databases of mitochondrial DNA. Nature. 2003, 421 (6925): 773-774. 10.1038/421773a.

Bandelt H, Salas A, Bravi C: Problems in FBI mtDNA database. Science. 2004, 305 (5689): 1402-1404. 10.1126/science.305.5689.1402b.