Induction strategies in fed-batch cultures for recombinant protein production in Escherichia coli: Application to rhamnulose 1-phosphate aldolase

Lorenz, 2005, Metagenomics and industrial applications, Nat. Rev. Microbiol., 3, 510, 10.1038/nrmicro1161 Straathof, 2002, The production of fine chemicals by biotransformations, Curr. Opin. Biotechnol., 13, 548, 10.1016/S0958-1669(02)00360-9 Schmid, 2001, Industrial biocatalysis today and tomorrow, Nature, 409, 258, 10.1038/35051736 Machajewski, 2000, The catalytic asymmetric aldol reaction, Angew. Chem.-Int. Ed., 39, 1352, 10.1002/(SICI)1521-3773(20000417)39:8<1352::AID-ANIE1352>3.0.CO;2-J Wymer, 2000, Enzyme-catalyzed synthesis of carbohydrates, Curr. Opin. Chem. Biol., 4, 110, 10.1016/S1367-5931(99)00061-7 Fessner, 2001, Biocatalytic synthesis of hydroxylated natural products using aldolases and related enzymes, Curr. Opin. Biotechnol., 12, 574, 10.1016/S0958-1669(01)00265-8 Takayama, 1997, Microbial aldolases and transketolases: new biocatalytic approaches to simple and complex sugars, Annu. Rev. Microbiol., 51, 285, 10.1146/annurev.micro.51.1.285 Hamilton, 2004, Enzymes in preparative mono- and oligo-saccharide synthesis, Nat. Prod. Rep., 21, 365, 10.1039/b210901h Samland, 2006, Microbial aldolases as C–C bonding enzymes-unknown treasures and new developments, Appl. Microbiol. Biotechnol., 71, 253, 10.1007/s00253-006-0422-6 Espelt, 2003, Stereoselective aldol additions catalyzed by dihydroxyacetone phosphate-dependent aldolases in emulsion systems: preparation and structural characterization of linear and cyclic iminopolyols from aminoaldehydes, Chem.-Eur. J., 9, 4887, 10.1002/chem.200304966 Fessner, 1991, Enzymes in organic-synthesis. 1. Diastereoselective enzymatic aldol additions – l-rhamnulose and l-fuculose 1-phosphate aldolases from Escherichia coli, Angew. Chem.-Int. Ed. Eng., 30, 555, 10.1002/anie.199105551 García-Junceda, 1995, A new strategy for the cloning, overexpression and one-step purification of 3 DHAP-dependent aldolases – rhamnulose-1-phosphate aldolase, fuculose-1-phosphate aldolase and tagatose-1,6-diphosphate aldolase, Bioorg. Med. Chem., 3, 945, 10.1016/0968-0896(95)00077-T Vidal, 2005, Recombinant production of serine hydroxymethyl transferase from Streptococcus thermophilus and its preliminary evaluation as a biocatalyst, Appl. Microbiol. Biotechnol., 68, 489, 10.1007/s00253-005-1934-1 Vidal, 2003, High-level production of recombinant His-tagged rhamnulose 1-phosphate aldolase in Escherichia coli, J. Chem. Technol. Biotechnol., 78, 1171, 10.1002/jctb.909 Vidal, 2008, Development of an antibiotic-free plasmid selection system based on glycine auxotrophy for recombinant protein production in E. coli, J. Biotechnol., 134, 127, 10.1016/j.jbiotec.2008.01.011 Shiloach, 2005, Growing E. coli to high cell density – a historical perspective on method development, Biotechnol. Adv., 23, 345, 10.1016/j.biotechadv.2005.04.004 Glick, 1995, Metabolic load and heterologous gene-expression, Biotechnol. Adv., 13, 247, 10.1016/0734-9750(95)00004-A Bentley, 1990, Plasmid-encoded protein – the principal factor in the metabolic burden associated with recombinant bacteria, Biotechnol. Bioeng., 35, 668, 10.1002/bit.260350704 Striedner, 2003, Tuning the transcription rate of recombinant protein in strong Escherichia coli expression systems through repressor titration, Biotechnol. Prog., 19, 1427, 10.1021/bp034050u Durany, 2005, Fed-batch production of recombinant fuculose-1-phosphate aldolase in E. coli, Process Biochem., 40, 707, 10.1016/j.procbio.2004.01.058 Vidal, 2005, Influence of induction and operation mode on recombinant rhamnulose 1-phosphate aldolase production by Escherichia coli using the T5 promoter, J. Biotechnol., 118, 75, 10.1016/j.jbiotec.2005.02.012 Pinsach, 2006, A simple feedback control of Escherichia coli growth for recombinant aldolase production in fed-batch mode, Biochem. Eng. J., 29, 235, 10.1016/j.bej.2006.01.001 Hansen, 1998, The effect of the lacY gene on the induction of IPTG inducible promoters, studied in Escherichia coli and Pseudomonas fluorescens, Curr. Microbiol., 36, 341, 10.1007/s002849900320 Jensen, 1993, The use of lac-type promoters in control analysis, Eur. J. Biochem., 211, 181, 10.1111/j.1432-1033.1993.tb19885.x Beckwith, 1987, The lactose operon, 1444 Yildirim, 2003, Feedback regulation in the lactose operon: a mathematical modeling study and comparison with experimental data, Biophys. J., 84, 2841, 10.1016/S0006-3495(03)70013-7 Riesenberg, 1991, High-cell-density cultivation of Escherichia coli, Curr. Opin. Biotechnol., 2, 380, 10.1016/S0958-1669(05)80142-9 Majewski, 1990, Simple constrained-optimization view of acetate overflow in Escherichia coli, Biotechnol. Bioeng., 35, 732, 10.1002/bit.260350711 Saier, 1989, Protein-phosphorylation and allosteric control of inducer exclusion and catabolite repression by the bacterial phosphoenolpyruvate – sugar phosphotransferase system, Microbiol. Rev., 53, 109, 10.1128/MMBR.53.1.109-120.1989 Wong, 1997, Mathematical model of the lac operon: inducer exclusion, catabolite repression, and diauxic growth on glucose and lactose, Biotechnol. Progr., 13, 132, 10.1021/bp970003o Santillan, 2004, Influence of catabolite repression and inducer exclusion on the bistable behavior of the lac operon, Biophys. J., 86, 1282, 10.1016/S0006-3495(04)74202-2 Chatterji, 2001, Revisiting the stringent response, ppGpp and starvation signaling, Curr. Opin. Microbiol., 4, 160, 10.1016/S1369-5274(00)00182-X Ihssen, 2004, Specific growth rate and not cell density controls the general stress response in Escherichia coli, Microbiology-SGM, 150, 1637, 10.1099/mic.0.26849-0 Chung, 2006, Stress response of Escherichia coli, Compr. Rev. Food Sci. Food Safety, 5, 52, 10.1111/j.1541-4337.2006.00002.x Andersson, 1996, Cell segregation and lysis have profound effects on the growth of Escherichia coli in high cell density fed batch cultures, Biotechnol. Progr., 12, 190, 10.1021/bp950069o Vilar, 2003, Modeling network dynamics: the lac operon, a case study, J. Cell Biol., 161, 471, 10.1083/jcb.200301125 Ozbudak, 2004, Multistability in the lactose utilization network of Escherichia coli, Nature, 427, 737, 10.1038/nature02298