Increased rates of dissimilatory nitrate reduction to ammonium (DNRA) under oxic conditions in a periodically hypoxic estuary
Tóm tắt
Từ khóa
Tài liệu tham khảo
Aller, 1986, Diagenesis of Fe and S in Amazon inner shelf muds: apparent dominance of Fe reduction and implications for the genesis of ironstones, Sediment. Proc. Amazon Cont. Shelf, 6, 263
An, 2002, Dissimilatory nitrate reduction to ammonium (DNRA) as a nitrogen link, versus denitrification as a sink in a shallow estuary (Laguna Madre/Baffin Bay, Texas), Mar. Ecol. Prog. Ser., 237, 41, 10.3354/meps237041
APHA (2005) APHA-AWWA-WPCF, Standard Methods for the Examination of Water and Wastewater, 20th ed. American Public Health Association, American Water Works Association and Water Environment Federation, Washington.
Behrendt, 2013, Vertical activity distribution of dissimilatory nitrate reduction in coastal marine sediments, Biogeosciences, 10, 7509, 10.5194/bg-10-7509-2013
Benz, 1998, Anaerobic and aerobic oxidation of ferrous itron at neutral pH by chemoheterotrophic nitrate reducing bacteria, Arch. Microbiol., 169, 159, 10.1007/s002030050555
Berg, 1998, Interpretation of measured concentration profiles in sediment pore water, Limnol. Oceanogr., 43, 1500, 10.4319/lo.1998.43.7.1500
Bonin, 1996, Anaerobic nitrate reduction to ammonium in two strains isolated from coastal marine sediment: a dissimilatory pathway, FEMS Microbiol. Ecol., 19, 27, 10.1111/j.1574-6941.1996.tb00195.x
Brunet, 1996, Sulfide-induced dissimilatory nitrate reduction to ammonia in anaerobic freshwater sediments, FEMS Microbiol. Ecol., 138, 131, 10.1111/j.1574-6941.1996.tb00340.x
Childs, 2002, Sediment denitrification in the Gulf of Mexico zone of hypoxia, Mar. Ecol. Prog. Ser., 240, 285, 10.3354/meps240285
Christensen, 2000, Sediment mineralization, nutrient fluxes, denitrification and dissimilatory nitrate reduction to ammonium in an estaurine fjord and sea cage trout farms, Aquat. Microb. Ecol., 21, 73, 10.3354/ame021073
Coby, 2011, Repeated anaerobic microbial redox cycling of iron, Appl. Environ. Microbiol., 77, 6036, 10.1128/AEM.00276-11
Cole, 1980, Nitrite reduction to ammonia by fermentative bacteria: a short circuit in the biological nitrogen cycle, FEMS Microbiol. Lett., 7, 65, 10.1111/j.1574-6941.1980.tb01578.x
Conley, 2007, Long-term changes and impacts of hypoxia in Danish coastal waters, Ecol. Appl., 17, S165, 10.1890/05-0766.1
Dalsgaard, 2000
Diaz, 2008, Spreading dead zones and consequences for marine ecosystems, Science, 321, 926, 10.1126/science.1156401
Dong, 2011, Dissimilatory reduction of nitrate to ammonium, not denitrification dominates benthic nitrate reduction in tropical estuaries, Limnol. Oceanogr., 56, 279, 10.4319/lo.2011.56.1.0279
Fazzolari, 1998, Simultaneous effects of increasing levels of glucose and oxygen partial pressures on denitrification and dissimilatory nitrate reduction to ammonium in repacked soil cores, Eur. J. Soil Biol., 34, 47, 10.1016/S1164-5563(99)80006-5
Hansen, 1996, Abiotic nitrate reduction to ammonium: key role of green rust, Environ. Sci. Technol., 30, 2053, 10.1021/es950844w
Hansen, 2001, Kinetics of nitrate reduction by green rusts – effects of interlayer anion and Fe(II):Fe(III) ratio, Appl. Clay Sci., 18, 81, 10.1016/S0169-1317(00)00029-6
Harper, 1997, Temporal, spatial, and resolution constraints for in situ sampling devices using diffusional equilibration: dialysis and DET, Environ. Sci. Technol., 31, 3110, 10.1021/es9700515
Hart, 1981, Trace metal speciation in the freshwater and estuarine regions of the Yarra River, Victoria, Estuar. Coast. Shelf Sci., 12, 353, 10.1016/S0302-3524(81)80001-1
Hou, 2012, Transformation and fate of nitrate near the sediment–water interface of Copano Bay, Cont. Shelf Res., 35, 86, 10.1016/j.csr.2012.01.004
Jorgensen, 1989, Annual pattern of denitrification and nitrate ammonification in estuarine sediment, Appl. Environ. Microbiol., 55, 1841, 10.1128/AEM.55.7.1841-1847.1989
Jorgensen, 1988, Two annual maxima of nitrate reduction and denitrification in estuarine sediment (Norsminde Fjord, Denmark), Mar. Ecol. Prog. Ser., 48, 147, 10.3354/meps048147
Kemp, 2005, Eutrophication of Chesapeake Bay: historical trends and ecological interactions, Mar. Ecol. Prog. Ser., 303, 1, 10.3354/meps303001
Kessler, 2013, Transport zonation limits coupled nitrification–denitrification in permeable sediments, Environ. Sci. Technol., 47, 13404, 10.1021/es403318x
King, 1984, Changes in the nitrate-reducing community of an anaerobic saltmarsh sediment in response to seasonal selection by temperature, J. Gen. Microbiol., 130, 2935
King, 1985, The influence of nitrate concentration upon the end-products of nitrate dissimilation by bacteria in anaerobic salt marsh sediment, FEMS Microbiol. Ecol., 31, 23, 10.1111/j.1574-6968.1985.tb01127.x
Klueglein, 2013, Abiotic oxidation of Fe(II) by reactive nitrogen species in cultures of the nitrate-reducing Fe(II) oxidizer Acidovorax sp. BoFeN1 – questioning the existence of enzymatic Fe(II) oxidation, Geobiology, 11, 180, 10.1111/gbi.12019
Krom, 1994, High-resolution pore-water sampling with a gel sampler, Limnol. Oceanogr., 39, 1967, 10.4319/lo.1994.39.8.1967
Nealson, 1994, Iron and manganese in anaerobic respiration: environmental significance, physiology, and regulation, Annu. Rev. Microbiol., 48, 311, 10.1146/annurev.mi.48.100194.001523
Nizzoli, 2010, Effect of organic enrichment and thermal regime on denitrification and dissimilatory nitrate reduction to ammonium (DNRA) in hypolimnetic sediments of two lowland lakes, Water Res., 44, 2715, 10.1016/j.watres.2010.02.002
Ogilvie, 1997, Selection by temperature of nitrate-reducing bacteria from estuarine sediments: species composition and competition for nitrate, FEMS Microbiol. Ecol., 23, 11, 10.1111/j.1574-6941.1997.tb00386.x
Oshiki, 2013, Nitrate-dependent ferrous iron oxidation by anaerobic ammonium oxidation (anammox) bacteria, Appl. Environ. Microbiol., 79, 4087, 10.1128/AEM.00743-13
Otte, 1999, Nitrogen, carbon, and sulfur metabolism in natural Thioploca samples, Appl. Environ. Microbiol., 65, 3148, 10.1128/AEM.65.7.3148-3157.1999
Powell, 2003, Importance of organic Fe complexing ligands in the Mississippi River plume, Estuar. Coast. Shelf Sci., 58, 757, 10.1016/S0272-7714(03)00182-3
Risgaard-Petersen, 1995, Combined microdiffusion-hypobromite oxidation method for determining N-15 isotope in ammonium, Soil Sci. Soc. Am. J., 59, 1077, 10.2136/sssaj1995.03615995005900040018x
Roberts, 2012, Hypoxic events stimulate nitrogen recycling in a shallow salt-wedge estuary: the Yarra River estuary, Australia, Limnol. Oceanogr., 57, 1427, 10.4319/lo.2012.57.5.1427
Rysgaard, 1996, Nitrification, denitrification and nitrate ammonification in sediments of two coastal lagoons in Southern France, Hydrobiologia, 329, 133, 10.1007/BF00034553
Sayama, 2005, Impact of bacterial NO3− transport on sediment biogeochemistry, Appl. Environ. Microbiol., 71, 7575, 10.1128/AEM.71.11.7575-7577.2005
Sholkovitz, 1993, The geochemistry of rare earth elements in the Amazon River estuary, Geochim. Cosmochim. Acta, 57, 2181, 10.1016/0016-7037(93)90559-F
Sigman, 1997, Natural abundance-level measurement of the nitrogen isotopic composition of oceanic nitrate: an adaptation of the ammonia diffusion method, Mar. Chem., 57, 227, 10.1016/S0304-4203(97)00009-1
Stief, 2010, Combined gel probe and isotope labeling technique for measuring dissimilatory nitrate reduction to ammonium in sediments at millimeter-level resolution, Appl. Environ. Microbiol., 76, 6239, 10.1128/AEM.01104-10
Stookey, 1970, Ferrozine – a new spectrophotometric reagent for iron, Anal. Chem., 42, 779, 10.1021/ac60289a016
Straub, 1996, Anaerobic, nitrate-dependent microbial oxidation by ferrous iron, Appl. Environ. Microbiol., 62, 1458, 10.1128/AEM.62.4.1458-1460.1996
Strohm, 2007, Growth yields in bacterial denitrification and nitrate ammonification, Appl. Environ. Microbiol., 73, 1420, 10.1128/AEM.02508-06
Tiedje, 1988, Ecology of denitrification and dissimilatory nitrate reduction to ammonium, 179
Tison, 1980, Influence of seasonal temperature on the temperature optima of bacteria in sediments of Lake George, New York, Appl. Environ. Microbiol., 39, 675, 10.1128/AEM.39.3.675-677.1980
Voillier, 2000, The ferrozine method revisited: Fe(II)/Fe(III) determination in natural waters, Appl. Geochem., 15, 785, 10.1016/S0883-2927(99)00097-9
Weber, 2001, Microbially catalyzed nitrate-dependent oxidation of biogenic solid-phase Fe(II) compounds, Environ. Sci. Technol., 35, 1644, 10.1021/es0016598
Weber, 2006, Anaerobic redox cycling of iron by freshwater sediment microorganisms, Environ. Microbiol., 8, 100, 10.1111/j.1462-2920.2005.00873.x