Inconsistency of Maximum Parsimony Revisited

Systematic Biology - Tập 53 Số 4 - Trang 521-528 - 2004
Susanne Schulmeister1,2
1Division of Invertebrate Zoology, American Museum of Natural History Central Park West at 79th Street New York NY 10024 USA; E-mail: [email protected]
2e-mail:

Tóm tắt

Từ khóa


Tài liệu tham khảo

Albert, 1993, Character-state weighting for cladistic analysis of protein-coding DNA sequences, Ann. Miss. Bot. Gard., 80, 752, 10.2307/2399859

Cavender, 1978, Taxonomy with confidence, Math. Biosci., 40, 271, 10.1016/0025-5564(78)90089-5

Chang, 1996, Inconsistency of evolutionary tree topology reconstruction methods when substitution rates vary across characters, Math. Biosci., 134, 189, 10.1016/0025-5564(95)00172-7

De Bry, 1992, The consistency of several phylogeny-inference methods under varying evolutionary rates, Mol. Biol. Evol., 9, 537

Felsenstein, 1978, Cases in which parsimony or compatibility methods will be positively misleading, Syst. Zool., 27, 401, 10.2307/2412923

Felsenstein, 1983, Inferring evolutionary trees from DNA sequences, Statistical analysis of DNA sequence data, 133

Fitch, 1971, Toward defining the course of evolution: Minimal change for a specific tree topology, Syst. Zool., 20, 406, 10.2307/2412116

Gaut, 1995, Success of maximum likelihood phylogeny inference in the four-taxon case, Mol. Biol. Evol., 12, 152, 10.1093/oxfordjournals.molbev.a040183

Hendy, 1989, A framework for the quantitative study of evolutionary trees, Syst. Zool., 38, 297, 10.2307/2992396

Jukes, 1969, Evolution of protein molecules, Mammalian protein metabolism, 21, 10.1016/B978-1-4832-3211-9.50009-7

Li, 1997, Molecular evolution

Penny, 1987, Reliability of evolutionary trees, Cold Spring Harbor Symp. Quant. Biol., 52, 857, 10.1101/SQB.1987.052.01.093

Penny, 1991, Testing the theory of descent, Phylogenetic analysis of DNA sequences, 155, 10.1093/oso/9780195066982.003.0009

Siddall, 1998, Success of parsimony in the four-taxon case: Long-branch repulsion by likelihood in the Farris zone, Cladistics, 14, 209, 10.1111/j.1096-0031.1998.tb00334.x

Steel, 1994, Reconstructing trees when sequence sites evolve at variable rates, J. Comput. Biol., 1, 153, 10.1089/cmb.1994.1.153

Sullivan, 2001, Should we use model-based methods for phylogenetic inference when we know that assumptions about among-site rate variation and nucleotide substitution pattern are violated? Syst, Biol., 50, 723

Swofford, 2001, Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods, Syst. Biol., 50, 525, 10.1080/10635150117959

Tuffley, 1997, Links between maximum likelihood and maximum parsimony under a simple model of site substitution, Bull. Math. Biol., 59, 581, 10.1007/BF02459467

Zharkikh, 1992, Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences, II. Four taxa without a molecular clock. J. Mol. Evol., 35, 356

Zharkikh, 1993, Inconsistency of the maximum-parsimony method: the case of five taxa with a molecular clock, Syst. Biol., 42, 113, 10.1093/sysbio/42.2.113