In situ immunofluorescent visualization of chromosomal transcripts in polytene chromosomes

Chromosoma - Tập 87 - Trang 263-277 - 1982
Andres Alcover1, Marta Izquierdo1, David Stollar2, Yoshichika Kitagawa2, Maury Miranda3, Carlos Alonso1
1Departamento de Bioquímica y Biología Molecular, Centro de Biología Molecular (C.S.I.C.-U.A.M.), Universidad Autónoma de Madrid, Madrid, Spain
2Department of Biochemistry, Tufts School of Medicine, Boston, USA
3Laboratory of Molecular Biology, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brasil

Tóm tắt

The induction and distribution of chromosomal transcripts in the polytene chromosomes of D. melanogaster and D. hydei has been investigated by indirect immunofluorescence using an antiserum directed against DNA/RNA hybrids. The fluorescence was intense and occurred in most of the chromosomal subdivisions when the chromosomes were exposed to denaturing conditions and then allowed to reanneal. The extent of hybrid formation depended both on the extent of DNA denaturation and on the maintenance of RNA integrity. Fluorescence was absent from chromosomes treated with pancreatic RNase before denaturation. The velocity of the chromosomal DNA/RNA hybridization reaction and the effects of the initiation inhibitor of RNA synthesis, DRB, suggest that in order to hybridize the RNA has to be located in its transcriptional compartment. Even though overall patterns of fluorescence seem to be similar during a developmental stage, variations were observed, particularly some correlated with puff induction after ecdysone stimulation.

Tài liệu tham khảo

Alcover, A., Izquierdo, M., Stollar, B.D., Miranda, M., Alonso, C.: Analytical studies of chromosomal transcription detected by an endogenous hybridization technique (EHT) using autoradiography and indirect immunofluorescence in Drosophila hydei. Acta. Embriol. Morphol. Exp. 2, 131–140 (1981) Alonso, C., Guerrero, I., de Roda, E., Alcover, A., Izquierdo, M., Pagés, M.: Phase thermal transitions of nucleoproteins: A study of conformational changes of chromosomal loci upon gene activation. Ciencia (Lisboa) 6, 121–131 (1981) Ananiev, E.U., Barsky, V.E.: Localization of RNA synthesis in the IB-36 region of Drosophila melanogaster X chromosome. Chromosoma (Berl.) 65, 359–371 (1978) Barberá, E., Caliari, M.J., Pagés, M., Alonso, C.: Chromosomal DNA denaturation and reassociation in situ. Exp. Cell. Res. 119, 151–162 (1979) Berendes, H.D.: Salivary gland function and chromosomal puffing patterns ind Drosophila hydei. Chromosoma (Berl.) 17, 35–77 (1965) Davidson, E.H., Britten, R.J.: Regulation of gene expression: Possible role of repetitive sequences. Science 204, 1052–1059 (1979) Egyhazi, E.: A tentative initiation inhibitor of chromosomal heterogeneous RNA synthesis. J. Mol. Biol. 84, 173–183 (1974) Egyhazi, E.: Inhibition of Balbiani ring RNA synthesis at the initiation level. Proc. Natl. Acad. Sci. (Wash.) 72, 947–950 (1975) Eghyhazi, E., Pigon, A., Rydlander, L.: 5,6-Dichlororibofuranosyl benzimidazol inhibits the rate of transcription initiation in intact Chironomus Cells. Eur. J. Biochem. 122, 445–451 (1982) García-Bellido, A., Moscoso del Prado, S.: Genetic analysis of maternal information in Drosophila. Nature (Lond.) 278, 346–348 (1979) Hennig, W.: Molecular hybridization of DNA and RNA in situ. Int. Rev. Cytol. 36, 1–44 (1973) Holmqulst, G.: The mechanism of C-banding: Depuration and β-elimination. Chromosoma (Berl.) 72, 203–224 (1979) Izquierdo, M., Arribas, C., Alonso, C.: Isolation of a structural gene mapping to subregions 63F of Drosophila melanogaster and 90B of D. hydei polytene chromosomes. Chromosoma (Berl.) 83, 353–366 (1981) Jamrich, M., Greenleaf, A.L., Bautz, E.K.F.: Localization of RNA polymerase in Drosophila melanogaster polytene chromosomes. Proc. Natl. Acad. Sci. (Wash.) 74, 2079–2083 (1977) Jones, K.W.: The method of in situ hybridization. In: New techniques in biophysics and cell biology. R.H. Pain, B.J. Smith, eds.), pp. 29–66. London: J. Wiley and Sons 1972 Kitagawa, Y., Stollar, B.D.: Comparison of poly (A)-poly(dT) and poly(I)-poly(dC) as immunogens for the induction of antibodies to RNA/DNA hybrids. Mol. Immunol. 19, 413–420 (1982) Krug, T.R., Chen, Y.C.: Actinomicin D-deoxy-nucleotide complexes as models for the actinomicin D-DNA complex. The use of nuclear magnetic resonance to determine the stoichiometry and the genometry of the complexes. Biochemistry 14, 4912–4922 (1975) Livak, K.J., Freund, R., Scheweber, M., Wensink, P.C., Meselson, M.: Sequence organization and transcription at two heat shock loci in Drosophila. Proc. Natl. Acad. Sci. (Wash.) 75, 5613–5617 (1978) Miranda, M., García, M.L., Alonso, C.: A novel method for the analisis of active chromosomal loci by an endogenous hybridization technique (EHT). Brotheria Genetica 2, 57–64 (1981) Pagés, M., Alonso, C.: Activity of the endogenous RNA polymerase on fixed polytene chromosomes. Exp. Cell. Res. 98, 120–126 (1976) Pagés, M., Alonso, C.: Chemical and conformational changes in chromosome regions being actively transcribed. Nucleic Acid Res 5, 549–562 (1978) Pardue, M.L., Gall, J.G.: Molecular hybridization of radioactive DNA to the RNA of cytological preparations. Proc. Natl. Acad. Sci. (Wash.) 64, 600–604 (1969) Pelling, C.: Ribonucleinsäure-Synthese der Riesenchromosomen. Autoradiographische Untersuchungen an Chironomus tentans. Chromosoma (Berl.) 15, 71–122 (1964) Plagens, U., Greenlead, A.L., Bautz, E.K.F.: Distribution of RNA polymerase on Drosophila polytene chromosomes as studied by indirect immunofluorescence. Chromosoma (Berl.) 59, 157–165 (1976) Rudkin, G.F., Stollar, B.D.: High resolution detection of DNA/RNA hybrids in situ by indirect immunofluorescence. Nature (London) 265, 472–473 Rudkin, G.T., Stollar, B.D.: Naturally occurring DNA/RNA hybrids. Normal patterns in polytene chromosomes. Human cytogenetics: INCN-UCIA Symposia on Molecular and Cellular Biology, Vol. 2. pp. 257–269, London, New York: Academic Press 1977b Sass, H.: RNA polymerase B in polytene chromosomes: Immunofluorescence and autoradiographic analysis during stimulated and repressed RNA synthesis. Cell 28, 269–278 (1982) Semeshin, V.F., Zhimulev, I.F., Belyaeva, E.S.: Electron microscope autoradiographic study on transcriptional activity of Drosophila melanogaster polytene chromosomes. Chromosoma (Berl.) 73, 163–177 (1979) Takuragawa, F., Dabrow, M., Neidle, S., Berman, H.M.: The structure of apseudo intercalated complex between actinomycin and the DNA binding sequence d(GpC). Nature (Lond.) 299, 466–469 (1982) Vázquez-Nin, G., Bernhard, W.: Comparative ultrastructural study of perichromatin and Balbiani ring granules. J. Ultrastruct. Res. 36, 842–860 (1971) Zhimulev, I.F., Belyaeva, E.J.: 3H-uridine labelling patterns in Drosophila melanogaster salivary gland chromosomes X, 2R and 3L. Chromosoma (Berl.) 49, 219–331 (1978)