Importance of nitrate reduction in benthic carbon mineralization in two eutrophic estuaries: Modeling, observations and laboratory experiments

Marine Chemistry - Tập 199 - Trang 24-36 - 2018
K. Khalil1, A.M. Laverman2, M. Raimonet3, C. Rabouille4
1Université Cadi Ayyad/Ecole Supérieure de Technologie d'Essaouira, Km 9, Route d'Agadir, BP 383 Essaouira Aljadida, Morocco
2Ecobio, UMR 6553, Université de Rennes 1, Campus de Beaulieu, 263 avenue du Général Leclerc, 35042 Rennes Cedex, France
3Sorbonne Universités, UPMC, Univ Paris 06, CNRS, EPHE, IPSL, UMR 7619 Metis, 4 place Jussieu, 75252 Paris, Cedex 05, France
4Laboratoire des Sciences du Climat et de l'Environnement, Laboratoire mixte CNRS-CEA, Av. de la Terrasse, 91190 Gif sur Yvette, France

Tài liệu tham khảo

Aminot, 2009, Nutrients in seawater using segmented flow analysis, 143 Andrieux-Loyer, 2008, Phosphorus dynamics and bioavailability in sediments of the Penzé estuary (NW France): in relation to annual P-fluxes and occurrences of AlexandriumMinutum, Biogeochemistry, 88, 213, 10.1007/s10533-008-9199-2 Asmala, 2017, Efficiency of the coastal filter: nitrogen and phosphorus removal in the Baltic Sea, Limnol. Oceanogr., 62, S222, 10.1002/lno.10644 Aurousseau, 2013, Evaluation de l'impact des cours d'eau sur l'eutrophisation dans la bande côtière: nécessité de raisonner sur les concentrations et sur les flux, Biotechnol. Agron. Soc. Environ., 17, 271 Bernard, 2015, Dissimilatory nitrate reduction to ammonium (DNRA) seasonally dominates NO3− reduction pathways in an anthropogenically impacted sub-tropical coastal lagoon, Biogeochemistry, 125, 47, 10.1007/s10533-015-0111-6 Billen, 1982, Modelling the processes of organic matter degradation and nutrient recycling in sedimentary systems, 15 Billen, 2007, River basin nutrient delivery to the coastal sea: assessing its potential to sustain new production of non-siliceous algae, Mar. Chem., 106, 148, 10.1016/j.marchem.2006.12.017 Billen, 1991, N, P and Si retention along the aquatic continuum from land to ocean, 19 Billen, 2011, Nitrogen flows from European regional watersheds to coastal marine waters, 271 Boudreau, 1986, Mathematics of tracer mixing in sediments: I. Spatially dependent, diffusive mixing, Am. J. Sci., 286, 161, 10.2475/ajs.286.3.161 Boudreau, 1997 Brigolin, 2009, Modelling the impact of aquaculture on early diagenetic processes in sea loch sediments, Mar. Ecol. Prog. Ser., 388, 63, 10.3354/meps08072 Burgin, 2007, Have we overemphasized the role of denitrification in aquatic ecosystems? A review of nitrate removal pathways, Front. Ecol. Environ., 5, 89, 10.1890/1540-9295(2007)5[89:HWOTRO]2.0.CO;2 Canavan, 2006, Organic matter mineralization in sediment of a coastal freshwater lake and response to salinization, Geochim. Cosmochim. Acta, 70, 2836, 10.1016/j.gca.2006.03.012 Canavan, 2007, Modeling nitrogen cycling in a coastal fresh water sediment, Hydrobiologia, 584, 27, 10.1007/s10750-007-0583-z Cloern, 2001, Our evolving conceptual model of the coastal eutrophication problem, Mar. Ecol. Prog. Ser., 210, 223, 10.3354/meps210223 Dähnke, 2008, A nitrate sink in estuaries? An assessment by means of stable nitrate isotopes in the Elbe estuary, Limnol. Oceanogr., 53, 10.4319/lo.2008.53.4.1504 Dale, 2009, Biogeographical distribution of diverse anaerobic ammonium oxidizing (anammox) bacteria in Cape Fear River Estuary, Environ. Microbiol., 11, 1194, 10.1111/j.1462-2920.2008.01850.x Dalsgaard, 2005, Anaerobic ammonium oxidation (anammox) in the marine environment, Res. Microbiol., 156, 457, 10.1016/j.resmic.2005.01.011 De Graaf, 1995, Anaerobic oxidation of ammonium is a biologically mediated process, Appl. Environ. Microbiol., 61, 1246, 10.1128/AEM.61.4.1246-1251.1995 Dedieu, 2007, Coupling of carbon, nitrogen and oxygen cycles in sediments from a Mediterranean lagoon: a seasonal perspective, Mar. Ecol. Prog. Ser., 346, 45, 10.3354/meps07031 Del Amo, 1996, 302 Den Berg, 2016, DNRA and denitrification coexist over a broad range of acetate/N-NO3− ratios, in a Chemostat enrichment culture, Front. Microbiol., 7, 1842 Emerson, 1984, Sediment water exchange in shallow water estuarine sediments, J. Mar. Res., 42, 709, 10.1357/002224084788505942 Fraisse, 2013, Morphofunctional traits reflect differences in phytoplankton community between rivers of contrasting flow regime, Aquat. Ecol., 47, 315, 10.1007/s10452-013-9446-z Giblin, 2013, The importance of dissimilatory nitrate reduction to ammonium (DNRA) in the nitrogen cycle of coastal ecosystems, Oceanography, 26, 124, 10.5670/oceanog.2013.54 Gravier, 2012, Monitoring of green tides on the Brittany coasts (France), 1 Herbert, 1999, Nitrogen cycling in coastal marine ecosystems, FEMS Microbiol. Rev., 23, 563, 10.1111/j.1574-6976.1999.tb00414.x Hou, 2015, Anaerobic ammonium oxidation and its contribution to nitrogen removal in China's coastal wetlands, Sci. Rep., 5 Howarth, 2011, Coupled biogeochemical cycles: eutrophication and hypoxia in temperate estuaries and coastal marine ecosystems, Front. Ecol. Environ., 9, 18, 10.1890/100008 Jickells, 2014, Nutrient transport through estuaries: the importance of the estuarine geography, Estuar. Coast. Shelf Sci., 150, 215, 10.1016/j.ecss.2014.03.014 Katsev, 2007, Effects of progressive oxygen depletion on sediment diagenesis and fluxes: a model for the lower St. Lawrence River Estuary, Limnol. Oceanogr., 52, 2555, 10.4319/lo.2007.52.6.2555 Khalil, 2013, Spatial and temporal variability of sediment organic matter recycling in two temperate eutrophicated estuaries, Aquat. Geochem., 19, 517, 10.1007/s10498-013-9213-8 King, 1987, The adaptation of nitrate-reducing bacterial communities in estuarine sediments in response to overlying nitrate load, FEMS Microbiol. Ecol., 45, 15, 10.1111/j.1574-6968.1987.tb02333.x Labry, 2016, High alkaline phosphatase activity in phosphate replete waters: the case of two macrotidal estuaries, Limnol. Oceanogr., 61, 1513, 10.1002/lno.10315 Laruelle, 2009 Laverman, 2006, Potential rates and pathways of microbial nitrate reduction in coastal sediments, FEMS Microbiol. Ecol., 58, 179, 10.1111/j.1574-6941.2006.00155.x Laverman, 2012, Comparative survey of potential nitrate and sulfate reduction rates in aquatic sediments, Geochim. Cosmochim. Acta, 77, 474, 10.1016/j.gca.2011.10.033 Li, 1974, Diffusion of ions in sea water and in deep-sea sediments, Geochim. Cosmochim. Acta, 38, 703, 10.1016/0016-7037(74)90145-8 Lorrain, 2000, Growth anomalies in Pecten maximus from coastal waters (Bay of Brest, France): relationship with diatom blooms, J. Mar. Biol. Assoc. U. K., 80, 667, 10.1017/S0025315400002496 Maerki, 2009, Mineralization pathways in lake sediments with different oxygen and organic carbon supply, Limnol. Oceanogr., 54, 428, 10.4319/lo.2009.54.2.0428 Meile, 2001, Quantifying bioirrigation in aquatic sediments: an inverse modeling approach, Limnol. Oceanogr., 46, 164, 10.4319/lo.2001.46.1.0164 Naeher, 2015, Molecular and geochemical constraints on anaerobic ammonium oxidation (anammox) in a riparian zone of the Seine Estuary (France), Biogeochemistry, 123, 237, 10.1007/s10533-014-0066-z Nixon, 1996, The fate of nitrogen and phosphorus at the land-sea margin of the North Atlantic Ocean, Biogeochemistry, 35, 141, 10.1007/BF02179826 Nowicki, 1994, The effect of temperature, oxygen, salinity, and nutrient enrichment on estuarine denitrification rates measured with a modified nitrogen gas flux technique, Estuar. Coast. Shelf Sci., 38, 137, 10.1006/ecss.1994.1009 NRC (National Research Council), 2000 Pastor, 2011, Modeling biogeochemical processes in sediments from the Rhone River prodelta area (NW Mediterranean Sea), Biogeosciences, 8, 1351, 10.5194/bg-8-1351-2011 Pomeroy, 1991, Bacterial responses to temperature and substrate concentration during the Newfoundland spring bloom, Mar. Ecol. Prog. Ser., 75, 143, 10.3354/meps075143 Ragueneau, 2002, Si/C decoupling in the world ocean: is the Southern Ocean different?, DeepSeaRes. II, 49, 3127, 10.1016/S0967-0645(02)00075-9 Raimonet, 2013, Strong gradient of benthic biogeochemical processes along a macrotidal temperate estuary: focus on P and Si cycles, Biogeochemistry Raimonet, 2013, Spatio-temporal variability in benthic silica cycling in two macrotidal estuaries: causes and consequences for local to global studies, Estuar. Coast. Shelf Sci., 119, 31, 10.1016/j.ecss.2012.12.008 Raimonet, 2015, Rapid transport and high accumulation of amorphous silica in the Congo deep-sea fan: a preliminary budget, J. Mar. Syst., 141, 71, 10.1016/j.jmarsys.2014.07.010 Resing, 1992, Determination of manganese in seawater using flow injection analysis with on-line preconcentration and spectrophotometric detection, Anal. Chem., 64, 2682, 10.1021/ac00046a006 Revsbech, 1989, An oxygen microsensor with a guard cathode, Limnol. Oceanogr., 34, 474, 10.4319/lo.1989.34.2.0474 Rockström, 2009, A safe operating space for humanity, Nature, 461, 472, 10.1038/461472a Sarradin, 2005, Fe analysis by the ferrozine method: adaptation to FIA towards in situ analysis in hydrothermal environment, Talanta, 66, 1131, 10.1016/j.talanta.2005.01.012 Seitzinger, 1988, Denitrification in freshwater and coastal marine ecosystems: ecological and geochemical significance, Limnol. Oceanogr., 33, 702 Soetaert, 2009 Soetaert, 1996, A model of early diagenetic processes from the shelf to abyssal depths, Geochim. Cosmochim. Acta, 60, 1019, 10.1016/0016-7037(96)00013-0 Thamdrup, 1998, Temperature dependence of aerobic respiration in a coastal sediment, FEMS Microbiol. Ecol., 25, 189, 10.1111/j.1574-6941.1998.tb00472.x Trimmer, 2003, Anaerobic ammonium oxidation measured in sediments along the Thames Estuary. United Kingdom, Appl. Environ. Microbiol., 69, 6447, 10.1128/AEM.69.11.6447-6454.2003 Tromp, 1995, A global model for the early diagenesis of organic carbon and organic phosphorus in marine sediments, Geochim. Cosmochim. Acta, 59, 1259, 10.1016/0016-7037(95)00042-X Vanderborght, 1977, Kinetic models of diagenesis in disturbed sediments. Part 2. Nitrogen diagenesis, Limnol. Oceanogr., 22, 794, 10.4319/lo.1977.22.5.0794 Wakeham, 1997, Molecular indicators of diagenetic status in marine organic matter, Geochim. Cosmochim. Acta, 61, 5363, 10.1016/S0016-7037(97)00312-8 Zumft, 1997, Cell biology and molecular basis of denitrification, Microbiol. Mol. Biol. Rev., 61, 533, 10.1128/.61.4.533-616.1997