Impact of aging on DNA methylation
Tài liệu tham khảo
Agarwal, 1998, Modulation of chromatin structure regulates cytokine gene expression during T cell differentiation, Immunity, 9, 765, 10.1016/S1074-7613(00)80642-1
Amir, 1999, Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2, Nat. Genet., 23, 185, 10.1038/13810
Antequera, 1993, Number of CpG islands and genes in human and mouse, Proc. Natl. Acad. Sci. U.S.A., 90, 11995, 10.1073/pnas.90.24.11995
Antequera, F., Bird, A., 1993b. CpG islands. In: Jost, J.P., Saluz, H.P. (Eds.), DNA Methylation: Molecular Biology and Biological Significance. Birkhauser Verlag, Basel, pp. 169–185.
Bachman, 2001, Dnmt3a and Dnmt3b are transcriptional repressors that exhibit unique localization properties to heterochromatin, J. Biol. Chem., 276, 32282, 10.1074/jbc.M104661200
Barbot, 2002, Epigenetic regulation of an IAP retrotransposon in the aging mouse: progressive demethylation and de-silencing of the element by its repetitive induction, Nucleic Acids Res., 30, 2365, 10.1093/nar/30.11.2365
Baylin, 2002, Mechanisms underlying epigenetically mediated gene silencing in cancer, Semin. Cancer Biol., 12, 331, 10.1016/S1044-579X(02)00053-6
Bestor, 1988, Cloning and sequencing of a cDNA encoding DNA methyltransferase of mouse cells. The carboxyl-terminal domain of the mammalian enzymes is related to bacterial restriction methyltransferases, J. Mol. Biol., 203, 971, 10.1016/0022-2836(88)90122-2
Bhattacharya, 1999, A mammalian protein with specific demethylase activity for mCpG DNA, Nature, 397, 579, 10.1038/17533
Bird, 1992, The essentials of DNA methylation, Cell, 70, 5, 10.1016/0092-8674(92)90526-I
Bird, 1995, Gene number, noise reduction and biological complexity, Trends Genet., 11, 94, 10.1016/S0168-9525(00)89009-5
Bird, 1999, Methylation-induced repression—belts, braces, and chromatin, Cell, 99, 451, 10.1016/S0092-8674(00)81532-9
Chan, 2002, CpG island methylation in aberrant crypt foci of the colorectum, Am. J. Pathol., 160, 1823, 10.1016/S0002-9440(10)61128-5
Chen, 1998, DNA hypomethylation leads to elevated mutation rates, Nature, 395, 89, 10.1038/25779
Clark, 1994, High sensitivity mapping of methylated cytosines, Nucleic Acids Res., 22, 2990, 10.1093/nar/22.15.2990
Comb, 1990, CpG methylation inhibits proenkephalin gene expression and binding of the transcription factor AP-2, Nucleic Acids Res., 18, 3975, 10.1093/nar/18.13.3975
Cooney, 2001, Dietary selenium and arsenic affect DNA methylation, J. Nutr., 131, 1871, 10.1093/jn/131.6.1871
Cornacchia, 1988, Hydralazine and procainamide inhibit T cell DNA methylation and induce autoreactivity, J. Immunol., 140, 2197, 10.4049/jimmunol.140.7.2197
Counts, 1996, Cell proliferation and global methylation status changes in mouse liver after phenobarbital and/or choline-devoid, methionine-deficient diet administration, Carcinogenesis, 17, 1251, 10.1093/carcin/17.6.1251
Deng, 1998, Role of the Ras-MAPK signaling pathway in the DNA methyltransferase response to DNA hypomethylation, Biol. Chem., 379, 1113, 10.1515/bchm.1998.379.8-9.1113
Deng, 2001, Decreased Ras-mitogen-activated protein kinase signaling may cause DNA hypomethylation in T lymphocytes from lupus patients, Arthritis Rheum., 44, 397, 10.1002/1529-0131(200102)44:2<397::AID-ANR59>3.0.CO;2-N
Duan, 2002, Dietary folate deficiency and elevated homocysteine levels endanger dopaminergic neurons in models of Parkinson’s disease, J. Neurochem., 80, 101, 10.1046/j.0022-3042.2001.00676.x
Ehrlich, 2002, DNA methylation in cancer: too much, but also too little, Oncogene, 21, 5400, 10.1038/sj.onc.1205651
Feinberg, 2000, DNA methylation, genomic imprinting and cancer, Curr. Top. Microbiol. Immunol., 249, 87
Feinberg, 2002, DNA methylation and genomic imprinting: insights from cancer into epigenetic mechanisms, Semin. Cancer Biol., 12, 389, 10.1016/S1044-579X(02)00059-7
Ferguson-Smith, 2001, Imprinting and the epigenetic asymmetry between parental genomes, Science, 293, 1086, 10.1126/science.1064020
Golbus, 1990, Quantitative changes in T cell DNA methylation occur during differentiation and ageing, Eur. J. Immunol., 20, 1869, 10.1002/eji.1830200836
Hansen, 1999, The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome, Proc. Natl. Acad. Sci. U.S.A., 96, 14412, 10.1073/pnas.96.25.14412
Hatada, 1991, A genomic scanning method for higher organisms using restriction sites as landmarks, Proc. Natl. Acad. Sci. U.S.A., 88, 9523, 10.1073/pnas.88.21.9523
Hendrich, 1999, The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites, Nature, 401, 301, 10.1038/45843
Issa, 2000, CpG-island methylation in aging and cancer, Curr. Top. Microbiol. Immunol., 249, 101
Issa, 1994, Methylation of the oestrogen receptor CpG island links ageing and neoplasia in human colon, Nat. Genet., 7, 536, 10.1038/ng0894-536
Issa, 1996, Switch from monoallelic to biallelic human IGF2 promoter methylation during aging and carcinogenesis, Proc. Natl. Acad. Sci. U.S.A., 93, 11757, 10.1073/pnas.93.21.11757
Jones, 1985, Altering gene expression with 5-azacytidine, Cell, 40, 485, 10.1016/0092-8674(85)90192-8
Jones, 2001, The role of DNA methylation in mammalian epigenetics, Science, 293, 1068, 10.1126/science.1063852
Jost, 1999, A chicken embryo protein related to the mammalian DEAD box protein p68 is tightly associated with the highly purified protein-RNA complex of 5-MeC-DNA glycosylase, Nucleic Acids Res., 27, 3245, 10.1093/nar/27.16.3245
Kawai, 1995, Correspondence of RLGS-M spot behavior with tissue expression on mouse homologue of DP1/TB2 gene, Biochem. Biophys. Res. Commun., 213, 967, 10.1006/bbrc.1995.2223
Klein, 1997, DNA methylation, heterochromatin and epigenetic carcinogens, Mutat. Res., 386, 163, 10.1016/S1383-5742(96)00052-X
Kruman, 2002, Folic acid deficiency and homocysteine impair DNA repair in hippocampal neurons and sensitize them to amyloid toxicity in experimental models of Alzheimer’s disease, J. Neurosci., 22, 1752, 10.1523/JNEUROSCI.22-05-01752.2002
Laird, P.W., Jaenisch, R., 1994. DNA methylation and cancer. Hum. Mol. Genet. 3, 1487–1495.
Lengauer, 1997, DNA methylation and genetic instability in colorectal cancer cells, Proc. Natl. Acad. Sci. U.S.A., 94, 2545, 10.1073/pnas.94.6.2545
Li, 1992, Targeted mutation of the DNA methyltransferase gene results in embryonic lethality, Cell, 69, 915, 10.1016/0092-8674(92)90611-F
Lindsay, 1987, Use of restriction enzymes to detect potential gene sequences in mammalian DNA, Nature, 327, 336, 10.1038/327336a0
Lopatina, 2002, Differential maintenance and de novo methylating activity by three DNA methyltransferases in aging and immortalized fibroblasts, J. Cell. Biochem., 84, 324, 10.1002/jcb.10015
Lu, 2002, Demethylation of ITGAL (CD11a) regulatory sequences in systemic lupus erythematosus, Arthritis Rheum., 46, 1282, 10.1002/art.10234
Lu, 2002, Effect of DNA methylation and chromatin structure on ITGAL expression, Blood, 99, 4503, 10.1182/blood.V99.12.4503
MacLeod, 1995, Regulation of DNA methylation by the Ras signaling pathway, J. Biol. Chem., 270, 11327, 10.1074/jbc.270.19.11327
Maher, 2000, Beckwith-Wiedemann syndrome: imprinting in clusters revisited, J. Clin. Invest., 105, 247, 10.1172/JCI9340
Matzke, 1999, Host defenses to parasitic sequences and the evolution of epigenetic control mechanisms, Genetica, 107, 271, 10.1023/A:1003921710672
Mays-Hoopes, 1986, Decreased methylation of the major mouse long interspersed repeated DNA during aging and in myeloma cells, Dev. Genet., 7, 65, 10.1002/dvg.1020070202
Nan, 1998, Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex, Nature, 393, 386, 10.1038/30764
Nyce, 1986, Variable effects of DNA-synthesis inhibitors upon DNA methylation in mammalian cells, Nucleic Acids Res., 14, 4353, 10.1093/nar/14.10.4353
Okano, 1998, Cloning and characterization of a family of novel mammalian DNA (cytosine-5) methyltransferases, Nat. Genet., 19, 219, 10.1038/890
Okano, 1999, DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development, Cell, 99, 247, 10.1016/S0092-8674(00)81656-6
Ono, 1989, Endogenous virus genomes become hypomethylated tissue—specifically during aging process of C57BL mice, Mech. Ageing Dev., 50, 27, 10.1016/0047-6374(89)90056-0
Ono, 1993, Biological significance of DNA methylation in the ageing process, Age Ageing, 22, S34, 10.1093/ageing/22.suppl_1.S34
Ottaviano, 1994, Methylation of the estrogen receptor gene CpG island marks loss of estrogen receptor expression in human breast cancer cells, Cancer Res., 54, 2552
Pallis, 1993, Quantitative analysis of lymphocyte CD11a using standardized flow cytometry, Scand. J. Immunol., 38, 559, 10.1111/j.1365-3083.1993.tb03241.x
Park, 2001, Age-dependent changes of p57(Kip2) and p21(Cip1/Waf1) expression in skeletal muscle and lung of mice, Biochim. Biophys. Acta, 1520, 163, 10.1016/S0167-4781(01)00266-4
Park, 2001, Epigenetic aspects of X-chromosome dosage compensation, Science, 293, 1083, 10.1126/science.1063073
Poirier, 2002, The effects of diet, genetics and chemicals on toxicity and aberrant DNA methylation: an introduction, J. Nutr., 132, 2336S, 10.1093/jn/132.8.2336S
Rath, 1989, Methylation of repetitive DNA sequences in the brain during aging of the rat, FEBS Lett., 244, 193, 10.1016/0014-5793(89)81191-3
Reik, 2001, Epigenetic reprogramming in mammalian development, Science, 293, 1089, 10.1126/science.1063443
Richardson, 2002, Role of DNA methylation in the regulation of cell function: autoimmunity, aging and cancer, J. Nutr., 132, 2401S, 10.1093/jn/132.8.2401S
Richardson, 1990, Evidence for impaired T cell DNA methylation in systemic lupus erythematosus and rheumatoid arthritis, Arthritis Rheum., 33, 1665, 10.1002/art.1780331109
Richardson, 1994, Lymphocyte function-associated antigen 1 overexpression and T cell autoreactivity, Arthritis Rheum., 37, 1363, 10.1002/art.1780370915
Romanov, 1981, Methylation of reiterated sequences in mammalian DNAs. Effects of the tissue type, age, malignancy and hormonal induction, Biochim. Biophys. Acta, 653, 204, 10.1016/0005-2787(81)90156-8
Rouleau, 1995, Regulation of the DNA methyltransferase by the Ras-AP-1 signaling pathway, J. Biol. Chem., 270, 1595, 10.1074/jbc.270.4.1595
Rowling, 2002, Vitamin A and its derivatives induce hepatic glycine N-methyltransferase and hypomethylation of DNA in rats, J. Nutr., 132, 365, 10.1093/jn/132.3.365
Sherr, 2000, Cellular senescence: mitotic clock or culture shock?, Cell, 102, 407, 10.1016/S0092-8674(00)00046-5
Slagboom, 1990, Messenger RNA levels and methylation patterns of GAPDH and beta-actin genes in rat liver, spleen and brain in relation to aging, Mech. Ageing Dev., 53, 243, 10.1016/0047-6374(90)90042-E
Spotswood, 2002, An increasingly complex code, J. Clin. Invest., 110, 577, 10.1172/JCI0216547
Takatsu, 1999, Age-dependent alterations in mRNA level and promoter methylation of collagen alpha1(I) gene in human periodontal ligament, Mech. Ageing Dev., 110, 37, 10.1016/S0047-6374(99)00041-X
Tissenbaum, 2001, Increased dosage of a sir-2 gene extends lifespan in Caenorhabditis elegans, Nature, 410, 227, 10.1038/35065638
Toyota, 1999, CpG island methylator phenotype in colorectal cancer, Proc. Natl. Acad. Sci. U.S.A., 96, 8681, 10.1073/pnas.96.15.8681
Tra, 2002, Infrequent occurrence of age-dependent changes in CpG island methylation as detected by restriction landmark genome scanning, Mech. Ageing Dev., 123, 1487, 10.1016/S0047-6374(02)00080-5
Vanyushin, 1970, Rare bases in animal DNA, Nature, 225, 948, 10.1038/225948a0
Vanyushin, 1973, The 5-methylcytosine in DNA of rats. Tissue and age specificity and the changes induced by hydrocortisone and other agents, Gerontologia, 19, 138, 10.1159/000211967
Verkerk, 1991, Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in Fragile X syndrome, Cell, 65, 905, 10.1016/0092-8674(91)90397-H
Wade, 1999, Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation, Nat. Genet., 23, 62, 10.1038/12664
Wilson, 1987, Genomic 5-methyldeoxycytidine decreases with age, J. Biol. Chem., 262, 9948, 10.1016/S0021-9258(18)61057-9
Wolffe, 1999, DNA demethylation, Proc. Natl. Acad. Sci. U.S.A., 96, 5894, 10.1073/pnas.96.11.5894
Wu, 1993, Expression of an exogenous eukaryotic DNA methyltransferase gene induces transformation of NIH 3T3 cells, Proc. Natl. Acad. Sci. U.S.A., 90, 8891, 10.1073/pnas.90.19.8891
Yoder, 1997, Cytosine methylation and the ecology of intragenomic parasites, Trends Genet., 13, 335, 10.1016/S0168-9525(97)01181-5
Yung, 1995, Mechanism of drug-induced lupus. I. Cloned Th2 cells modified with DNA methylation inhibitors in vitro cause autoimmunity in vivo, J. Immunol., 154, 3025, 10.4049/jimmunol.154.6.3025
Yung, 1996, Mechanisms of drug-induced lupus. II. T cells overexpressing lymphocyte function-associated antigen 1 become autoreactive and cause a lupus-like disease in syngeneic mice, J. Clin. Invest., 97, 2866, 10.1172/JCI118743
Yung, 1997, Mechanisms of drug-induced lupus. IV. Comparison of procainamide and hydralazine with analogs in vitro and in vivo, Arthritis Rheum., 40, 1436, 10.1002/art.1780400811
Yung, 2001, Unexpected effects of a heterozygous dnmt1 null mutation on age-dependent DNA hypomethylation and autoimmunity, J. Gerontol. A Biol. Sci. Med. Sci., B, 56, 268, 10.1093/gerona/56.6.B268
Zhang, 2002, Age-dependent DNA methylation changes in the ITGAL (CD11a) promoter, Mech. Ageing Dev., 123, 1257, 10.1016/S0047-6374(02)00014-3