Immobilized Peptides as High-Affinity Capture Agents for Self-Associating Proteins

Kodadek, 2001, Protein microarrays, Chem. Biol., 8, 105, 10.1016/S1074-5521(00)90067-X Kodadek, 2002, Protein-detecting microarrays, Trends Biochem. Sci., 27, 295, 10.1016/S0968-0004(02)02105-9 Vignali, 2000, Multiplexed particle-based flow cytometric assays, J. Immunol. Methods, 243, 243, 10.1016/S0022-1759(00)00238-6 Oliver, 1998, Multiplexed analysis of human cytokines by use of the FlowMetrix system, Clin. Chem., 44, 2057, 10.1093/clinchem/44.9.2057 Eggers, 1994, A microchip for quantitative detection of molecules utilizing luminescent and radioisotope, Biotechniques, 17, 516 Huang, 2002, Connexin 43 suppresses human glioblastoma cell growth by down-regulation of monocyte chemotactic protein 1, as discovered using protein array technology, Cancer Res., 62, 2806 Huang, 2001, Detection of multiple proteins in an antibody-based protein microarray system, J. Immunol. Methods, 255, 1, 10.1016/S0022-1759(01)00394-5 Wiese, 2001, Simultaneous multianalyte ELISA performed on a microarray, Clin. Chem., 47, 1451, 10.1093/clinchem/47.8.1451 Huang, 2001, Simultaneous detection of multiple cytokines from conditioned media and patient's sera by an antibody-based protein array system, Anal. Biochem., 294, 55, 10.1006/abio.2001.5156 Walter, 2000, Protein arrays for gene expression and molecular interaction screening, Curr. Opin. Microbiol., 3, 298, 10.1016/S1369-5274(00)00093-X Haab, B.B., Dunham, M.J., and Brown, P.O. (2001). Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol. 2, research0004.1–0004.13. Osborne, 1997, Aptamers as therapeutic and diagnostic reagents, Curr. Opin. Chem. Biol., 1, 5, 10.1016/S1367-5931(97)80102-0 Jhaveri, 2000, In vitro selection of signaling aptamers, Nat. Biotechnol., 18, 1293, 10.1038/82414 Famulok, 1998, Oligonucleotide libraries-variatio delectat, Curr. Opin. Chem. Biol., 2, 320, 10.1016/S1367-5931(98)80004-5 Seetharaman, 2001, Immobilized RNA switches for the analysis of complex chemical and biological mixtures, Nat. Biotechnol., 19, 336, 10.1038/86723 Vaish, 2002, Monitoring post-translational modification of proteins with allosteric ribozymes, Nat. Biotechnol., 20, 810, 10.1038/nbt719 Roberts, 1997, RNA-peptide fusions for the in vitro selection of peptides and proteins, Proc. Natl. Acad. Sci. USA, 94, 12297, 10.1073/pnas.94.23.12297 Wilson, 2001, The use of mRNA display to select high-affinity protein-binding peptides, Proc. Natl. Acad. Sci. USA, 98, 3750, 10.1073/pnas.061028198 Colas, 1996, Genetic selection of peptide aptamers that recognize and inhibit cyclin-dependent kinase 2, Nature, 380, 548, 10.1038/380548a0 Zhu, 2000, A Cdc6-binding peptide selected using a bacterial two-hybrid-like system is a cell cycle inhibitor, J. Biol. Chem., 275, 32098, 10.1074/jbc.M001560200 Kuruvilla, 2002, Dissecting glucose signaling with diversity-oriented synthesis and small-molecule microarrays, Nature, 416, 653, 10.1038/416653a Shuker, 1996, Discovering high-affinity ligands for proteins, Science, 274, 1531, 10.1126/science.274.5292.1531 Olejniczak, 1997, Stromelysin inhibitors designed from weakly bound fragments, J. Am. Chem. Soc., 119, 5828, 10.1021/ja9702780 Thoma, 2001, Nanomolar E-selectin inhibitors, J. Am. Chem. Soc., 123, 10113, 10.1021/ja0164430 Terskikh, 1997, “Peptabody”, Proc. Natl. Acad. Sci. USA, 94, 1663, 10.1073/pnas.94.5.1663 Merritt, 2002, Characterization and crystal structure of a high-affinity pentavalent receptor-binding inhibitor for Cholera toxin and E. coli heat-labile enterotoxin, J. Am. Chem. Soc., 124, 8818, 10.1021/ja0202560 Kitov, 2000, Shiga-like toxins are neutralized by tailored multivalent carbohydrate ligands, Nature, 403, 669, 10.1038/35001095 Kiessling, 2000, Synthetic multivalent ligands in the exploration of cell-surface interactions, Curr. Opin. Chem. Biol., 4, 696, 10.1016/S1367-5931(00)00153-8 Cussac, 1999, A Sos-derived peptidimer blocks the Ras signaling pathway by binding both Grb2 SH3 domains and displays antiproliferative activity, FASEB J., 13, 31, 10.1096/fasebj.13.1.31 Maly, 2000, Combinatorial target-guided ligand assembly, Proc. Natl. Acad. Sci. USA, 97, 2419, 10.1073/pnas.97.6.2419 Heyduk, 1996, Fluorescence anisotropy, Methods Enzymol., 274, 492, 10.1016/S0076-6879(96)74039-9 Han, 2000, Peptides selected to bind the Gal80 repressor are potent transcriptoinal activation domains in yeast, J. Biol. Chem., 275, 14979, 10.1074/jbc.275.20.14979 Fancy, 1999, Chemistry for the analysis of protein-protein interactions, Proc. Natl. Acad. Sci. USA, 96, 6020, 10.1073/pnas.96.11.6020 Melcher, 2001, Gal80-Gal80 interaction on adjacent Gal4p binding sites is required for complete GAL gene repression, EMBO J., 20, 841, 10.1093/emboj/20.4.841 Kussie, 1996, Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain, Science, 274, 948, 10.1126/science.274.5289.948 Radhakrishnan, 1997, Solution structure of the KIX domain of CBP bound to the transactivation domain of CREB, Cell, 91, 741, 10.1016/S0092-8674(00)80463-8 Johnston, 1987, Interaction of positive and negative regulatory proteins in the galactose regulation of yeast, Cell, 50, 143, 10.1016/0092-8674(87)90671-4 Marino-Ramirez, 2002, Isolation and mapping of self-assembling protein domains encoded by the Saccharomyces cerevisiae genome using l repressor fusions, Yeast, 19, 641, 10.1002/yea.867 Needels, 1993, Generation and screening of an oligonucleotide-encoded synthetic peptide library, Proc. Natl. Acad. Sci. USA, 90, 10700, 10.1073/pnas.90.22.10700 Fairbrother, 1998, Novel peptides selected to bind vascular endothelial growth factor target the receptor-binding site, Biochemistry, 37, 17754, 10.1021/bi981931e Hartig, 2002, Protein-dependent ribozymes report molecular interactions in real time, Nat. Biotechnol., 20, 717, 10.1038/nbt0702-717 MacBeth, 1999, Printing small-molecules as microarrays and detecting protein-ligand interactions en masse, J. Am. Chem. Soc., 121, 7967, 10.1021/ja991083q