Illumina sequencing and assessment of new cost-efficient protocol for metagenomic-DNA extraction from environmental water samples
Tài liệu tham khảo
Medeiros, 2016, Comparative metagenome of a stream impacted by the urbanization phenomenon, Braz J Microbiol, 47, 835, 10.1016/j.bjm.2016.06.011
Yang, 2017, Illumina-based analysis of endophytic bacterial diversity of tree peony (Paeonia Sect. Moutan) roots and leaves, Braz J Microbiol, 48, 695, 10.1016/j.bjm.2017.02.009
Rigonato, 2017, Temporal assessment of microbial communities in soils of two contrasting mangroves, Braz J Microbiol
Hu, 2010, A developed DNA extraction method for different soil samples, J Basic Microbiol, 50, 401, 10.1002/jobm.200900373
Bag, 2016, An improved method for high quality metagenomics DNA extraction from human and environmental samples, Sci Rep, 6, 67, 10.1038/srep26775
Kathiravan, 2015, Enhanced method for microbial community DNA extraction and purification from agricultural yellow loess soil, J Microbiol, 53, 767, 10.1007/s12275-015-5454-0
Kumar, 2015, Development of PCR-based technique for detection of purity of pashmina fiber from textile materials, Appl Biochem Biotechnol, 175, 3856, 10.1007/s12010-015-1552-z
Sagar, 2014, Assessment of five soil DNA extraction methods and a rapid laboratory-developed method for quality soil DNA extraction for 16S rDNA-based amplification and library construction, J Microbiol Methods, 97, 68, 10.1016/j.mimet.2013.11.008
Miao, 2014, A method suitable for DNA extraction from humus-rich soil, Biotechnol Lett, 36, 2223, 10.1007/s10529-014-1591-5
Zelaya-Molina, 2011, Easy and efficient protocol for Oomycete DNA extraction suitable for population genetic analysis, Biotechnol Lett, 33, 715, 10.1007/s10529-010-0478-3
Yeates, 1998, Methods for microbial DNA extraction from soil for PCR amplification, Biol Proced Online, 1, 40, 10.1251/bpo6
Miller, 2016, Metabarcoding of fungal communities associated with bark beetles, Ecol Evol, 6, 1590, 10.1002/ece3.1925
Essam, 2010, Kinetics and metabolic versatility of highly tolerant phenol degrading Alcaligenes strain TW1, J Hazard Mater, 173, 783, 10.1016/j.jhazmat.2009.09.006
Klindworth, 2013, Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies, Nucleic Acids Res, 41, 11, 10.1093/nar/gks808
Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat Meth, 7, 335, 10.1038/nmeth.f.303
Ma, 2015, Bacterial community compositions of coking wastewater treatment plants in steel industry revealed by Illumina high-throughput sequencing, Bioresour Technol, 179, 436, 10.1016/j.biortech.2014.12.041
Gatte-Picchi, 2014, Functional analysis of environmental DNA-derived microviridins provides new insights into the diversity of the tricyclic peptide family, Appl Environ Microbiol, 80, 1380, 10.1128/AEM.03502-13
Ranasinghe, 2015, An improved protocol for the isolation of total genomic DNA from Labyrinthulomycetes, Biotechnol Lett, 37, 685, 10.1007/s10529-014-1712-1
Smith, 2014, Sequence depth, not PCR replication, improves ecological inference from next generation DNA sequencing, PLoS ONE, 9, e90234, 10.1371/journal.pone.0090234