Identifying dissolved oxygen variability and stress in tidal freshwater streams of northern New Zealand

Cade, B. S., & Noon, B. R. (2003). A gentle introduction to quantile regression for ecologists. Frontiers in Ecology and the Environment, 1(8), 412–420.

Cade, B.S., & Richards, J.D. (2007). Blossom Statistical Software, Version W2008.04.02. Fort Collins Science Center: US Geological Survey.

Cade, B., Richards, J., & Mielke, P., Jr. (2006). Rank score and permutation testing alternatives for regression quantile estimates. Journal of Statistical Computation and Simulation, 76(4), 331–355. doi: 10.1080/10629360500109168 .

Caraco, N. F., & Cole, J. J. (2002). Contrasting impacts of a native and alien macrophyte on dissolved oxygen in a large river. Ecological Applications, 12(5), 1496–1509. doi: 10.1890/1051-0761(2002)012[1496:CIOANA]2.0.CO;2 .

Carpenter, A. (1982). Habitat and distribution of the freshwater shrimp Paratya curvirostris (Decapoda: Atyidae) in North Canterbury. Mauri Ora, 10, 85–98.

Carter, V., Barko, J. W., Godshalk, G. L., & Rybicki, N. B. (1988). Effects of submersed macrophytes on water quality in the tidal Potomac River, Maryland. Journal of Freshwater Ecology, 4(4), 493–501.

Champion, P. D., & Tanner, C. C. (2004). Seasonality of macrophytes and interaction with flow in a New Zealand lowland stream. Hydrobiologia, 441(1), 1–12.

Chapman, M. A., & Lewis, M. H. (1976). An introduction to the freshwater Crustacea of New Zealand. Auckland: Collins.

Chapra, S. C., & Di Toro, D. M. (1991). Delta method for estimating primary production, respiration, and reaeration in streams. Journal of Environmental Engineering, 117(5), 640–655.

Davies-Colley, R. J., & Quinn, J. M. (1998). Stream lighting in five regions of North Island. New Zealand: control by channel size and riparian vegetation New Zealand Journal of Marine and Freshwater Research, 32, 591–605.

Dawson, F. H., & Kern-Hansen, U. (1979). The effect of natural and artificial shade on the macrophytes of lowland streams and the use of shade as a management technique. Internationale Revue der gesamten Hydrobiologie und Hydrographie, 64(4), 437–455. doi: 10.1002/iroh.19790640402 .

Edbrooke, S.W. (2001). Geology of the Auckland area. Institute of Geological & Nuclear Sciences: Hamilton, New Zealand

Findlay, S., Nieder, W., Blair, E., & Fischer, D. (2006). Multi-scale controls on water quality effects of submerged aquatic vegetation in the tidal freshwater Hudson River. Ecosystems, 9(1), 84–96.

Goodwin, K., Caraco, N., & Cole, J. (2008). Temporal dynamics of dissolved oxygen in a floating-leaved macrophyte bed. Freshwater Biology, 53(8), 1632–1641.

Hill, J., & Jowett, I.G. (2004). WAIORA—Water Allocation Impacts on River Attributes (version 2.0 ed.). Hamilton: NIWA.

House, M. R. (1995). Orbital forcing timescales: an introduction. Geological Society, London, Special Publications, 85(1), 1–18. doi: 10.1144/gsl.sp.1995.085.01.01 .

Jones, R. C. (1990). The effect of submersed aquatic vegetation on phytoplankton and water quality in the tidal freshwater Potomac River. Journal of Freshwater Ecology, 5(3), 279–288.

Jones, R. C., Kelso, D. P., & Schaeffer, E. (2008). Spatial and seasonal patterns in water quality in an embayment-mainstem reach of the tidal freshwater Potomac River, USA: a multiyear study. Environmental Monitoring and Assessment, 147(1), 351–375. doi: 10.1007/s10661-007-0126-0 .

Jowett, I. G. (1989). River hydraulic and habitat simulation, RHYHABSIM computer manual. Christchurch: Ministry of Agriculture and Fisheries.

Jowett, I. G., Kingsland, S., & Collier, K. J. (2004). WAIORA user guide: Water Allocation Impacts on River Attributes, version 2.0. Hamilton: NIWA.

Killgore, K. J., Morgan, R. P., & Rybicki, N. B. (1989). Distribution and abundance of fishes associated with submersed aquatic plants in the Potomac River. North American Journal of Fisheries Management, 9(1), 101–111. doi:10.1577/1548-8675(1989) 009<0101:DAAOFA>2.3.CO;2.

Lampman, G., Caraco, N., & Cole, J. (1999). Spatial and temporal patterns of nutrient concentration and export in the tidal Hudson River. Estuaries and Coasts, 22(2), 285–296.

Liu, W.-C., Liu, S.-Y., Hsu, M.-H., & Kuo, A. Y. (2005). Water quality modeling to determine minimum instream flow for fish survival in tidal rivers. Journal of Environmental Management, 76(4), 293–308.

Mackay, D. W., & Gilligan, J. (1972). The relative importance of freshwater input, temperature and tidal range in determining levels of dissolved oxygen in a polluted estuary. Water Research, 6(2), 183–190.

Maes, J., Damme, P. A., Taillieu, A., & Ollevier, F. (1998). Fish communities along an oxygen-poor salinity gradient (Zeeschelde Estuary, Belgium). Journal of Fish Biology, 52(3), 534–546.

Maes, J., Stevens, M., & Breine, J. (2007). Modelling the migration opportunities of diadromous fish species along a gradient of dissolved oxygen concentration in a European tidal watershed. Estuarine, Coastal and Shelf Science, 75(1–2), 151–162.

McBride, G. B., & Chapra, S. C. (2005). Rapid calculation of oxygen in streams: approximate delta method. Journal of Environmental Engineering, 131(3), 336–342.

McDowall, R. M. (1990). New Zealand freshwater fishes; a natural history and a guide. Auckland: Heinemann Reed.

Odum, H. T. (1956). Primary production in flowing waters. Limnology and Oceanography, 1(2), 102–117.

Odum, W. E. (1988). Comparative ecology of tidal freshwater and salt marshes. Annual Review of Ecology and Systematics, 19(1), 147–176.

Peterson, M., & Ross, S. (1991). Dynamics of littoral fishes and decapods along a coastal river-estuarine gradient. Estuarine, Coastal and Shelf Science, 33(5), 467–483.

Poff, N. L., Allan, J. D., Bain, M. B., Karr, J. R., Prestegaard, K. L., Richter, B., et al. (1997). The natural flow regime: a new paradigm for riverine conservation and restoration. BioScience, 47, 769–784.

Riis, T., & Biggs, B. J. F. (2003). Hydrologic and hydraulic control of macrophyte establishment and performance in streams. Limnology and Oceanography, 48(4), 1488–1497.

Rybicki, N. B., Jenter, H. L., Carter, V., Baltzer, R. A., & Turtora, M. (1997). Observations of tidal flux between a submersed aquatic plant stand and the adjacent channel in the Potomac River near Washington, D.C. Limnology and Oceanography, 42(2), 307–317.

Schuchardt, B., Haesloop, U., & Schirmer, M. (1993). The tidal freshwater reach of the Weser Estuary: riverine or estuarine? Aquatic Ecology, 27(2), 215–226.

Sierra, J. P., Sánchez-Arcilla, A., Figueras, P. A., González Del Río, J., Rassmussen, E. K., & Mösso, C. (2004). Effects of discharge reductions on salt wedge dynamics of the Ebro River. River Research and Applications, 20(1), 61–77. doi: 10.1002/rra.721 .

Sousa, W. P. (1984). The role of disturbance in natural communities. Annual Review of Ecology and Systematics, 15(1), 353–391. doi: 10.1146/annurev.es.15.110184.002033 .

Thyssen, N., & Erlandsen, M. (1987). Reaeration of oxygen in shallow, macrophyte rich streams: II. Relationship between the reaeration rate coefficient and hydraulic properties. Internationale Revue der gesamten Hydrobiologie und Hydrographie, 72(5), 575–597. doi: 10.1002/iroh.19870720505 .

Turner, L., & Erskine, W. D. (2005). Variability in the development, persistence and breakdown of thermal, oxygen and salt stratification on regulated rivers of southeastern Australia. River Research and Applications, 21(2–3), 151–168.

Tyler, R., Brady, D., & Targett, T. (2009). Temporal and spatial dynamics of diel-cycling hypoxia in estuarine tributaries. Estuaries and Coasts, 32(1), 123–145. doi: 10.1007/s12237-008-9108-x .

USEPA (1986). Quality criteria for water 1986. Washington: United States Environmental Protection Agency. pp. 477

Wang, T., & Cresser, M. S. (2007). Evaluating alternative river management options in the tidal Ouse using the QUESTS1D model. Science of the Total Environment, 373(1), 1–12.

Wilcock, R. J., & Nagels, J. W. (2001). Effects of aquatic macrophytes on physico-chemical conditions of three contrasting lowland streams: a consequence of diffuse pollution from agriculture? Water Science and Technology, 43(5), 163–168.

Wilcock, R. J., Nagels, J. W., McBride, G. B., Collier, K. J., Wilson, B. T., & Huser, B. A. (1998). Characterisation of lowland streams using a single-station diurnal curve analysis model with continuous monitoring data for dissolved oxygen and temperature. New Zealand Journal of Marine and Freshwater Research, 32, 67–79.

Wilding, T. K. (2006). Flow requirements for ecosystem health in selected Coromandel streams: Awaroa, Tapu, Waiomu and Wharekawa. NIWA Client Report HAM2006-148 (pp. 102). Hamilton: NIWA.

Wilding, T. K. (2007). Minimum flows for ecosystem health in lowland streams of the Coromandel: Wentworth, Stony, Whareroa, Waikawau and Waikanae. NIWA Client Report HAM2007-098. Hamilton: National Institute of Water & Atmospheric Research Ltd.