Identifying Pig Mitochondrial TSS: Structure and Functional Features

Mitochondrion - Tập 49 - Trang 19-24 - 2019
Hao Liu1, Tao Yin1, Xing Zhang1, Xingbo Zhao1
1College of Animal Science and Technology, China Agricultural University, No.2 Yuanmingyuan West Road, Haidian District, Beijing 100193, PR China

Tài liệu tham khảo

Aversa, 2016, Mitochondria are naturally micro robots -a review, Am. J. Eng. Appl. Sci., 9, 10.3844/ajeassp.2016.991.1002 Bianchessi, 2016, Methylation profiling by bisulfite sequencing analysis of the mtDNA Non-Coding Region in replicative and senescent Endothelial Cells, Mitochondrion, 27, 40, 10.1016/j.mito.2016.02.004 Byun, 2016, Effects of air pollution and blood mitochondrial DNA methylation on markers of heart rate variability, J. Am. Heart Assoc., 5, e003218, 10.1161/JAHA.116.003218 Cannino, 2007, Nuclear-mitochondrial interaction, Mitochondrion, 7, 359, 10.1016/j.mito.2007.07.001 Carlos Jose, 2013, Epigenetic modification of liver mitochondrial DNA is associated with histological severity of nonalcoholic fatty liver disease, Gut, 62, 1356, 10.1136/gutjnl-2012-302962 Chen, 2017, Mitochondrial DNA T7719G in tRNA-Lys gene affects litter size in Small-tailed sheep, J. Anim. Sci. Biotechnol., 8, 31, 10.1186/s40104-017-0160-x Cheng, 2018, Ten-eleven translocation 1 (TET1) gene is a potential target of miR-21-5p in human colorectal cancer, Surg. Oncol., 27, 76, 10.1016/j.suronc.2017.12.004 Chiaratti, 2018, The role of mitochondria in the female germline: implications to fertility and inheritance of mitochondrial diseases, Cell Biol. Int., 42, 711, 10.1002/cbin.10947 Feng, 2010, Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons, Nat. Neurosci., 13, 423, 10.1038/nn.2514 Feng, 2012, Correlation between increased ND2 expression and demethylated displacement loop of mtDNA in colorectal cancer, Mol. Med. Rep., 6, 125 Fernández, 2008, Mitochondrial genome polymorphisms associated with longissimus muscle composition in Iberian pigs, J. Anim. Sci., 86, 1283, 10.2527/jas.2007-0568 Fernández-Silva, 2010, Replication and transcription of mammalian mitochondrial Dna, Exp. Physiol., 88, 41, 10.1113/eph8802514 Gao, 2015, De-methylation of displacement loop of mitochondrial DNA is associated with increased mitochondrial copy number and nicotinamide adenine dinucleotide subunit 2 expression in colorectal cancer, Mol. Med. Rep., 12, 7033, 10.3892/mmr.2015.4256 Goffart, 2010, Regulation and co-ordination of nuclear gene expression during mitochondrial biogenesis, Exp. Physiol., 88, 33, 10.1113/eph8802500 Liu, 2019, Association analysis of mitochondrial DNA polymorphisms with oocyte number in pigs, Reprod. Fertil. Dev., 31, 805, 10.1071/RD18219 Jie, 2005, The organization and inheritance of the mitochondrial genome, Nat. Rev. Genet., 6, 815, 10.1038/nrg1708 JT, 2002, DNA methylation and the regulation of gene transcription, Cellular & Molecular Life Sciences Cmls, 59, 241, 10.1007/s00018-002-8420-z Kaniak-Golik, 2015, Mitochondria–nucleus network for genome stability, Free Radic. Biol. Med., 82, 73, 10.1016/j.freeradbiomed.2015.01.013 Koch, 2016, Genetic variation: nuclear and mitochondrial genome interplay, Nat. Rev. Genet., 17, 502, 10.1038/nrg.2016.96 Lee, 2015, Mitochondrial DNA copy number is regulated by DNA methylation and demethylation of POLGA in stem and cancer cells and their differentiated progeny, Cell Death Dis., 6, e1664, 10.1038/cddis.2015.34 Li, 2016, RNA-Seq analysis reveals genes underlying different disease responses to porcine circovirus type 2 in pigs, PLoS One, 11 Liu, 2016, CpG methylation patterns of human mitochondrial DNA, Sci. Rep., 6 Manev, 2013, Progress in mitochondrial epigenetics, Biomol. Concep., 4, 381, 10.1515/bmc-2013-0005 Mishra, 2015, Epigenetic modification of mitochondrial DNA in the development of diabetic retinopathy, Invest. Ophthalmol. Vis. Sci., 56, 5133, 10.1167/iovs.15-16937 Nicholls, 2014, In D-loop: 40 years of mitochondrial 7S DNA, Exp. Gerontol., 56, 175, 10.1016/j.exger.2014.03.027 Pagliuca, 2015, Differential role for Sp1/Sp3 transcription factors in the regulation of the promoter activity of multiple cyclin-dependent kinase inhibitor genes, J. Cell. Biochem., 76, 360, 10.1002/(SICI)1097-4644(20000301)76:3<360::AID-JCB3>3.0.CO;2-1 Ren, 2017, High-resolution profiles of gene expression and DNA methylation highlight mitochondrial modifications during early embryonic development, J. Reprod. Dev., 63, 247, 10.1262/jrd.2016-168 Scarpulla, 2008, Transcriptional paradigms in mammalian mitochondrial biogenesis and function, Physiol. Rev., 88, 611, 10.1152/physrev.00025.2007 Shaheda, 2008, Telomerase does not counteract telomere shortening but protects mitochondrial function under oxidative stress, J. Cell Sci., 121, 1046, 10.1242/jcs.019372 Smirgalia, 2008, 64. A novel role for mitochondria in regulating epigenetic modification in the nucleus, Mitochondrion, 7, 1182 Timothy, 2010, The role of mitochondrial DNA copy number in mammalian fertility, Biol. Reprod., 83, 52, 10.1095/biolreprod.109.080887 Xie, 2015, Quantitative changes in mitochondrial DNA copy number in various tissues of pigs during growth, Genet. Mol. Res., 14, 1662, 10.4238/2015.March.6.12 Choi, 2011, Shot-gun proteomic analysis of mitochondrial D-loop DNA binding proteins: identification of mitochondrial histones, Mol. BioSyst., 7, 1523, 10.1039/c0mb00277a Yukari, 2015, Validation of mitochondrial gene delivery in liver and skeletal muscle via hydrodynamic injection using an artificial mitochondrial reporter DNA vector, Mol. Pharm., 12, 4311, 10.1021/acs.molpharmaceut.5b00511 Zheng, 2015, Insulin resistance is associated with epigenetic and genetic regulation of mitochondrial DNA in obese humans, Clin. Epigenetics, 7, 60, 10.1186/s13148-015-0093-1 Zinovkina, 2015, DNA methylation, mitochondria, and programmed aging, Biochemistry, 80, 1571