Identification of the role of C/EBP in neurite regeneration following microarray analysis of a L. stagnalisCNS injury model

Springer Science and Business Media LLC - Tập 13 - Trang 1-14 - 2012
Mila Aleksic1, Zhong-Ping Feng1
1Department of Physiology, Faculty of Medicine, University of Toronto, Toronto, Canada

Tóm tắt

Neuronal regeneration in the adult mammalian central nervous system (CNS) is severely compromised due to the presence of extrinsic inhibitory signals and a reduced intrinsic regenerative capacity. In contrast, the CNS of adult Lymnaea stagnalis (L. stagnalis), a freshwater pond snail, is capable of spontaneous regeneration following neuronal injury. Thus, L. stagnalis has served as an animal model to study the cellular mechanisms underlying neuronal regeneration. However, the usage of this model has been limited due to insufficient molecular tools. We have recently conducted a partial neuronal transcriptome sequencing project and reported over 10,000 EST sequences which allowed us to develop and perform a large-scale high throughput microarray analysis. To identify genes that are involved in the robust regenerative capacity observed in L. stagnalis, we designed the first gene chip covering ~15, 000 L. stagnalis CNS EST sequences. We conducted microarray analysis to compare the gene expression profiles of sham-operated (control) and crush-operated (regenerative model) central ganglia of adult L. stagnalis. The expression levels of 348 genes were found to be significantly altered (p < 0.05) following nerve injury. From this pool, 67 sequences showed a greater than 2-fold change: 42 of which were up-regulated and 25 down-regulated. Our qPCR analysis confirmed that CCAAT enhancer binding protein (C/EBP) was up-regulated following nerve injury in a time-dependent manner. In order to test the role of C/EBP in regeneration, C/EBP siRNA was applied following axotomy of cultured Lymnaea PeA neurons. Knockdown of C/EBP following axotomy prevented extension of the distal, proximal and intact neurites. In vivo knockdown of C/EBP postponed recovery of locomotory activity following nerve crush. Taken together, our data suggest both somatic and local effects of C/EBP are involved in neuronal regeneration. This is the first high-throughput microarray study in L. stagnalis, a model of axonal regeneration following CNS injury. We reported that 348 genes were regulated following central nerve injury in adult L. stagnalis and provided the first evidence for the involvement of local C/EBP in neuronal regeneration. Our study demonstrates the usefulness of the large-scale gene profiling approach in this invertebrate model to study the molecular mechanisms underlying the intrinsic regenerative capacity of adult CNS neurons.

Tài liệu tham khảo

Aguayo AJ, David S, Bray GM: Influences of the glial environment on the elongation of axons after injury: transplantation studies in adult rodents. J Exp Biol. 1981, 95: 231-240. Fawcett JW, Asher RA: The glial scar and central nervous system repair. Brain Res Bull. 1999, 49: 377-391. 10.1016/S0361-9230(99)00072-6. Xu XM, Guenard V, Kleitman N, Aebischer P, Bunge MB: A combination of BDNF and NT-3 promotes supraspinal axonal regeneration into Schwann cell grafts in adult rat thoracic spinal cord. Exp Neurol. 1995, 134: 261-272. 10.1006/exnr.1995.1056. Bregman BS, McAtee M, Dai HN, Kuhn PL: Neurotrophic factors increase axonal growth after spinal cord injury and transplantation in the adult rat. Exp Neurol. 1997, 148: 475-494. 10.1006/exnr.1997.6705. Ye JH, Houle JD: Treatment of the chronically injured spinal cord with neurotrophic factors can promote axonal regeneration from supraspinal neurons. Exp Neurol. 1997, 143: 70-81. 10.1006/exnr.1996.6353. Di Giovanni S: Molecular targets for axon regeneration: focus on the intrinsic pathways. Expert Opin Ther Targets. 2009, 13: 1387-1398. 10.1517/14728220903307517. Bates CA, Stelzner DJ: Extension and regeneration of corticospinal axons after early spinal injury and the maintenance of corticospinal topography. Exp Neurol. 1993, 123: 106-117. 10.1006/exnr.1993.1144. Hasan SJ, Keirstead HS, Muir GD, Steeves JD: Axonal regeneration contributes to repair of injured brainstem-spinal neurons in embryonic chick. J Neurosci. 1993, 13: 492-507. Blackmore M, Letourneau PC: Changes within maturing neurons limit axonal regeneration in the developing spinal cord. J Neurobiol. 2006, 66: 348-360. 10.1002/neu.20224. Brockes JP, Kumar A: Comparative aspects of animal regeneration. Annu Rev Cell Dev Biol. 2008, 24: 525-549. 10.1146/annurev.cellbio.24.110707.175336. Goss RJ: The evolution of regeneration: adaptive or inherent?. J Theor Biol. 1992, 159: 241-260. 10.1016/S0022-5193(05)80704-0. Koert CE, Spencer GE, van MJ, Li KW, Geraerts WP, Syed NI, et al: Functional implications of neurotransmitter expression during axonal regeneration: serotonin, but not peptides, auto-regulate axon growth of an identified central neuron. J Neurosci. 2001, 21: 5597-5606. Hermann PM, Wildering WC, Bulloch AG: Functional recovery of respiratory behavior during axonal regeneration in snails (Lymnaea stagnalis) is experience dependent. Behav Neurosci. 2000, 114: 410-423. Wildering WC, Hermann PM, Bulloch AG: Lymnaea epidermal growth factor promotes axonal regeneration in CNS organ culture. J Neurosci. 2001, 21: 9345-9354. Janse C, Kits KS, Lever AJ: The re-formation of connections in the nervous sytem of Lymnaea stagnalis after nerve injury. Malacologia. 1979, 18: 485-488. Hermann PM, Nicol JJ, Nagle GT, Bulloch AG, Wildering WC: Epidermal growth factor-dependent enhancement of axonal regeneration in the pond snail Lymnaea stagnalis: role of phagocyte survival. J Comp Neurol. 2005, 492: 383-400. 10.1002/cne.20732. Feng ZP, Klumperman J, Lukowiak K, Syed NI: In vitro synaptogenesis between the somata of identified Lymnaea neurons requires protein synthesis but not extrinsic growth factors or substrate adhesion molecules. J Neurosci. 1997, 17: 7839-7849. Syed NI, Lukowiak K, Bulloch AG: Specific in vitro synaptogenesis between identified Lymnaea and Helisoma neurons. Neuroreport. 1992, 3: 793-796. 10.1097/00001756-199209000-00018. Syed NI, Bulloch AG, Lukowiak K: The respiratory central pattern generator (CPG) of Lymnaea reconstructed in vitro. Acta Biol Hung. 1992, 43: 409-419. Feng ZP, Zhang Z, van Kesteren RE, Straub VA, van NP, Jin K, et al: Transcriptome analysis of the central nervous system of the mollusc Lymnaea stagnalis. BMC Genomics. 2009, 10: 451-10.1186/1471-2164-10-451. Ridgway RL, Syed NI, Lukowiak K, Bulloch AG: Nerve growth factor (NGF) induces sprouting of specific neurons of the snail, Lymnaea stagnalis. J Neurobiol. 1991, 22: 377-390. 10.1002/neu.480220406. Spencer GE, Klumperman J, Syed NI: Neurotransmitters and neurodevelopment. Role of dopamine in neurite outgrowth, target selection and specific synapse formation. Perspect Dev Neurobiol. 1998, 5: 451-467. Dmetrichuk JM, Carlone RL, Jones TR, Vesprini ND, Spencer GE: Detection of endogenous retinoids in the molluscan CNS and characterization of the trophic and tropic actions of 9-cis retinoic acid on isolated neurons. J Neurosci. 2008, 28: 13014-13024. 10.1523/JNEUROSCI.3192-08.2008. Farrar NR, Dmetrichuk JM, Carlone RL, Spencer GE: A novel, nongenomic mechanism underlies retinoic acid-induced growth cone turning. J Neurosci. 2009, 29: 14136-14142. 10.1523/JNEUROSCI.2921-09.2009. Carter CJ, Farrar N, Carlone RL, Spencer GE: Developmental expression of a molluscan RXR and evidence for its novel, nongenomic role in growth cone guidance. Dev Biol. 2010, 343: 124-137. 10.1016/j.ydbio.2010.03.023. Aimone JB, Leasure JL, Perreau VM, Thallmair M: Spatial and temporal gene expression profiling of the contused rat spinal cord. Exp Neurol. 2004, 189: 204-221. 10.1016/j.expneurol.2004.05.042. Carmel JB, Galante A, Soteropoulos P, Tolias P, Recce M, Young W, et al: Gene expression profiling of acute spinal cord injury reveals spreading inflammatory signals and neuron loss. Physiol Genomics. 2001, 7: 201-213. Pan JZ, Jornsten R, Hart RP: Screening anti-inflammatory compounds in injured spinal cord with microarrays: a comparison of bioinformatics analysis approaches. Physiol Genomics. 2004, 17: 201-214. 10.1152/physiolgenomics.00177.2003. Sehm T, Sachse C, Frenzel C, Echeverri K: miR-196 is an essential early-stage regulator of tail regeneration, upstream of key spinal cord patterning events. Dev Biol. 2009, 334: 468-480. 10.1016/j.ydbio.2009.08.008. Hui K, Senzel A, Feng ZP: Rapid assessment of real-time quantitative PCR data for relative quantification of gene expression. Frontiers in Physiology. 2009, Abstract Hui K, Fei GH, Saab BJ, Su J, Roder JC, Feng ZP: Neuronal calcium sensor-1 modulation of optimal calcium level for neurite outgrowth. Development. 2007, 134: 4479-4489. 10.1242/dev.008979. Fei G, Guo C, Sun HS, Feng ZP: Chronic hypoxia stress-induced differential modulation of heat-shock protein 70 and presynaptic proteins. J Neurochem. 2007, 100: 50-61. 10.1111/j.1471-4159.2006.04194.x. Nejatbakhsh N, Guo CH, Lu TZ, Pei L, Smit AB, Sun HS, et al: Caltubin, a novel molluscan tubulin-interacting protein, promotes axonal growth and attenuates axonal degeneration of rodent neurons. J Neurosci. 2011, 31: 15231-15244. 10.1523/JNEUROSCI.2516-11.2011. Yan D, Wu Z, Chisholm AD, Jin Y: The DLK-1 kinase promotes mRNA stability and local translation in C. elegans synapses and axon regeneration. Cell. 2009, 138: 1005-1018. 10.1016/j.cell.2009.06.023. Murphy D: Gene expression studies using microarrays: principles, problems, and prospects. Adv Physiol Educ. 2002, 26: 256-270. Asyali MH, Alci M: Reliability analysis of microarray data using fuzzy c-means and normal mixture modeling based classification methods. Bioinformatics. 2005, 21: 644-649. 10.1093/bioinformatics/bti036. Kerr MK, Martin M, Churchill GA: Analysis of variance for gene expression microarray data. J Comput Biol. 2000, 7: 819-837. 10.1089/10665270050514954. Duggan DJ, Bittner M, Chen Y, Meltzer P, Trent JM: Expression profiling using cDNA microarrays. Nat Genet. 1999, 21: 10-14. Monaghan JR, Walker JA, Page RB, Putta S, Beachy CK, Voss SR: Early gene expression during natural spinal cord regeneration in the salamander Ambystoma mexicanum. J Neurochem. 2007, 101: 27-40. De Biase A, Knoblach SM, Di GS, Fan C, Molon A, Hoffman EP, et al: Gene expression profiling of experimental traumatic spinal cord injury as a function of distance from impact site and injury severity. Physiol Genomics. 2005, 22: 368-381. 10.1152/physiolgenomics.00081.2005. Tachibana T, Noguchi K, Ruda MA: Analysis of gene expression following spinal cord injury in rat using complementary DNA microarray. Neurosci Lett. 2002, 327: 133-137. 10.1016/S0304-3940(02)00375-0. Hagg T, Oudega M: Degenerative and spontaneous regenerative processes after spinal cord injury. J Neurotrauma. 2006, 23: 264-280. Song G, Cechvala C, Resnick DK, Dempsey RJ, Rao VL: GeneChip analysis after acute spinal cord injury in rat. J Neurochem. 2001, 79: 804-815. Ruda MA, Ling QD, Hohmann AG, Peng YB, Tachibana T: Altered nociceptive neuronal circuits after neonatal peripheral inflammation. Science. 2000, 289: 628-631. 10.1126/science.289.5479.628. Tanzer L, Jones KJ: Neurotherapeutic action of testosterone on hamster facial nerve regeneration: temporal window of effects. Horm Behav. 2004, 45: 339-344. 10.1016/j.yhbeh.2004.01.002. Yanik MF, Cinar H, Cinar HN, Chisholm AD, Jin Y, Ben-Yakar A: Neurosurgery: functional regeneration after laser axotomy. Nature. 2004, 432: 822-10.1038/432822a. Nejatbakhsh N, Lu TZ, Guo C, van Kesteren RE, Feng ZP: A putative calcium binding protein, LCaBP regulates neurite regeneration. 2009, Society for Neuroscience, Chicago, IL, Ref Type: Abstract Menard C, Hein P, Paquin A, Savelson A, Yang XM, Lederfein D, et al: An essential role for a MEK-C/EBP pathway during growth factor-regulated cortical neurogenesis. Neuron. 2002, 36: 597-610. 10.1016/S0896-6273(02)01026-7. Marshall J, Dolan BM, Garcia EP, Sathe S, Tang X, Mao Z, et al: Calcium channel and NMDA receptor activities differentially regulate nuclear C/EBPbeta levels to control neuronal survival. Neuron. 2003, 39: 625-639. 10.1016/S0896-6273(03)00496-3. Hatakeyama D, Sadamoto H, Watanabe T, Wagatsuma A, Kobayashi S, Fujito Y, et al: Requirement of new protein synthesis of a transcription factor for memory consolidation: paradoxical changes in mRNA and protein levels of C/EBP. J Mol Biol. 2006, 356: 569-577. 10.1016/j.jmb.2005.12.009. Ejarque-Ortiz A, Gresa-Arribas N, Straccia M, Mancera P, Sola C, Tusell JM, et al: CCAAT/enhancer binding protein delta in microglial activation. J Neurosci Res. 2010, 88: 1113-1123. Kfoury N, Kapatos G: Identification of neuronal target genes for CCAAT/enhancer binding proteins. Mol Cell Neurosci. 2009, 40: 313-327. 10.1016/j.mcn.2008.11.004. Poli V: The role of C/EBP isoforms in the control of inflammatory and native immunity functions. J Biol Chem. 1998, 273: 29279-29282. 10.1074/jbc.273.45.29279. Hatakeyama D, Fujito Y, Sakakibara M, Ito E: Expression and distribution of transcription factor CCAAT/enhancer-binding protein in the central nervous system of Lymnaea stagnalis. Cell Tissue Res. 2004, 318: 631-641. 10.1007/s00441-004-0965-8. Akira S, Isshiki H, Sugita T, Tanabe O, Kinoshita S, Nishio Y, et al: A nuclear factor for IL-6 expression (NF-IL6) is a member of a C/EBP family. EMBO J. 1990, 9: 1897-1906. Nadeau S, Hein P, Fernandes KJ, Peterson AC, Miller FD: A transcriptional role for C/EBP beta in the neuronal response to axonal injury. Mol Cell Neurosci. 2005, 29: 525-535. 10.1016/j.mcn.2005.04.004. Cortes-Canteli M, Pignatelli M, Santos A, Perez-Castillo A: CCAAT/enhancer-binding protein beta plays a regulatory role in differentiation and apoptosis of neuroblastoma cells. J Biol Chem. 2002, 277: 5460-5467. 10.1074/jbc.M108761200. Cortes-Canteli M, Wagner M, Ansorge W, Perez-Castillo A: Microarray analysis supports a role for ccaat/enhancer-binding protein-beta in brain injury. J Biol Chem. 2004, 279: 14409-14417. 10.1074/jbc.M313253200. Sung YJ, Povelones M, Ambron RT: RISK-1: a novel MAPK homologue in axoplasm that is activated and retrogradely transported after nerve injury. J Neurobiol. 2001, 47: 67-79. 10.1002/neu.1016. Korneev S, Fedorov A, Collins R, Blackshaw SE, Davies JA: A subtractive cDNA library from an identified regenerating neuron is enriched in sequences up-regulated during nerve regeneration. Invert Neurosci. 1997, 3: 185-192. 10.1007/BF02480373. MacGillavry HD, Cornelis J, van der Kallen LR, Sassen MM, Verhaagen J, Smit AB, et al: Genome-wide gene expression and promoter binding analysis identifies NFIL3 as a repressor of C/EBP target genes in neuronal outgrowth. Mol Cell Neurosci. 2011, 46: 460-468. 10.1016/j.mcn.2010.11.011. Miller FD, Tetzlaff W, Bisby MA, Fawcett JW, Milner RJ: Rapid induction of the major embryonic alpha-tubulin mRNA, T alpha 1, during nerve regeneration in adult rats. J Neurosci. 1989, 9: 1452-1463. Nakata S, Tsutsui M, Shimokawa H, Tamura M, Tasaki H, Morishita T, et al: Vascular neuronal NO synthase is selectively upregulated by platelet-derived growth factor: involvement of the MEK/ERK pathway. Arterioscler Thromb Vasc Biol. 2005, 25: 2502-2508. 10.1161/01.ATV.0000190663.88143.97. Wang DO, Martin KC, Zukin RS: Spatially restricting gene expression by local translation at synapses. Trends Neurosci. 2010, 33: 173-182. 10.1016/j.tins.2010.01.005. Wang W, van NE, Willis DE, Twiss JL: RNA transport and localized protein synthesis in neurological disorders and neural repair. Dev Neurobiol. 2007, 67: 1166-1182. 10.1002/dneu.20511. Willis DE, Twiss JL: The evolving roles of axonally synthesized proteins in regeneration. Curr Opin Neurobiol. 2006, 16: 111-118. 10.1016/j.conb.2006.01.002. Lacroix-Fralish ML, Tawfik VL, Tanga FY, Spratt KF, DeLeo JA: Differential spinal cord gene expression in rodent models of radicular and neuropathic pain. Anesthesiology. 2006, 104: 1283-1292. 10.1097/00000542-200606000-00025. Pfaffl MW: A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 2001, 29: e45-10.1093/nar/29.9.e45. Reynolds A, Leake D, Boese Q, Scaringe S, Marshall WS, Khvorova A: Rational siRNA design for RNA interference. Nat Biotechnol. 2004, 22: 326-330. 10.1038/nbt936. de Jong RM, Dijkstra BW: Structure and mechanism of bacterial dehalogenases: different ways to cleave a carbon-halogen bond. Curr Opin Struct Biol. 2003, 13: 722-730. 10.1016/j.sbi.2003.10.009. Spencer GE, Syed NI, Lukowiak K, Winlow W: Halothane-induced synaptic depression at both in vivo and in vitro reconstructed synapses between identified Lymnaea neurons. J Neurophysiol. 1995, 74: 2604-2613. Syed NI, Bulloch AG, Lukowiak K: In vitro reconstruction of the respiratory central pattern generator of the mollusk Lymnaea. Science. 1990, 250: 282-285. 10.1126/science.2218532. Feng ZP, Hasan SU, Lukowiak K, Syed NI: Target cell contact suppresses neurite outgrowth from soma-soma paired Lymnaea neurons. J Neurobiol. 2000, 42: 357-369. 10.1002/(SICI)1097-4695(20000215)42:3<357::AID-NEU7>3.0.CO;2-F. Spencer GE, Lukowiak K, Syed NI: Dopamine regulation of neurite outgrowth from identified Lymnaea neurons in culture. Cell Mol Neurobiol. 1996, 16: 577-589. 10.1007/BF02152058. Erez H, Malkinson G, Prager-Khoutorsky M, De Zeeuw CI, Hoogenraad CC, Spira ME: Formation of microtubule-based traps controls the sorting and concentration of vesicles to restricted sites of regenerating neurons after axotomy. J Cell Biol. 2007, 176: 497-507. 10.1083/jcb.200607098.