Identification of novel anelloviruses in the blood of giant panda (Ailuropoda melanoleuca)
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Ning, 2021, Virome in fecal samples from wild giant pandas (Ailuropoda Melanoleuca), Front Vet. Sci., 8, 10.3389/fvets.2021.767494
Wei, 2020, Ailuropoda melanoleuca (Giant Panda), Trends Genet, 36, 68, 10.1016/j.tig.2019.09.009
Kang, 2019, Giant panda protection: challenges and hopes, Environ. Sci. Pollut. Res Int, 26, 18001, 10.1007/s11356-019-05404-7
Yi, 2021, Feline panleukopenia virus with G299E substitution in the VP2 protein first identified from a captive giant panda in China, Front Cell Infect. Microbiol, 11
Gao, 2009, Isolation and identification of a canine coronavirus strain from giant pandas (Ailuropoda melanoleuca), J. Vet. Sci., 10, 261, 10.4142/jvs.2009.10.3.261
Guo, 2013, Identification of canine parvovirus with the Q370R point mutation in the VP2 gene from a giant panda (Ailuropoda melanoleuca), Virol. J., 10, 10.1186/1743-422X-10-163
Guo, 2013, Full genome sequence of giant panda rotavirus strain CH-1, Genome Announc, 1, 10.1128/genomeA.00241-12
Martelli, 2019, Influenza A(H1N1)pdm09 virus infection in a captive Giant Panda, Hong Kong, Emerg. Infect. Dis., 25, 2303, 10.3201/eid2512.191143
Feng, 2016, Fatal canine distemper virus infection of giant pandas in China, Sci. Rep., 6
Biagini, 2009, Classification of TTV and related viruses (anelloviruses), Curr. Top. Microbiol Immunol., 331, 21
Varsani, 2021, Taxonomic update for mammalian anelloviruses (family Anelloviridae), Arch. Virol., 166, 2943, 10.1007/s00705-021-05192-x
Webb, 2020, Torque teno viruses in health and disease, Virus Res, 285, 10.1016/j.virusres.2020.198013
Luo, 2001, Enteric transmission of transfusion-transmitted virus, Chin. Med J. (Engl. ), 114, 1201
Mortazkar, 2020, Molecular epidemiology of anellovirus infection in children's urine: a cross-sectional study, Adv. Biomed. Res, 9, 16, 10.4103/abr.abr_169_19
Okamoto, 2002, Genomic characterization of TT viruses (TTVs) in pigs, cats and dogs and their relatedness with species-specific TTVs in primates and tupaias, J. Gen. Virol., 83, 1291, 10.1099/0022-1317-83-6-1291
Okamoto, 2009, History of discoveries and pathogenicity of TT viruses, Curr. Top. Microbiol Immunol., 331, 1
Zanotta, 2015, Up-regulation of the monocyte chemotactic protein-3 in sera from bone marrow transplanted children with torquetenovirus infection, J. Clin. Virol., 63, 6, 10.1016/j.jcv.2014.11.028
Gergely, 2005, Detection of TT virus in patients with idiopathic inflammatory myopathies, Ann. N. Y Acad. Sci., 1050, 304, 10.1196/annals.1313.032
Salmanizadeh, 2012, Detection of torque teno midi virus/small anellovirus (TTMDV/SAV) in chronic cervicitis and cervical tumors in Isfahan, Iran, Arch. Virol., 157, 291, 10.1007/s00705-011-1169-7
Costa, 2012, Prevalence and genetic diversity of torque teno virus in patients with systemic lupus erythematosus in a reference service in Mato Grosso do Sul, Rev. Bras. Reum., 52, 49
Hrazdilova, 2016, New species of Torque Teno miniviruses infecting gorillas and chimpanzees, Virology, 487, 207, 10.1016/j.virol.2015.10.016
Sun, 2018, Identification of the interaction and interaction domains of chicken anemia virus VP2 and VP3 proteins, Virology, 513, 188, 10.1016/j.virol.2017.09.014
Ramos, 2018, High frequency and extensive genetic heterogeneity of TTSuV1 and TTSuVk2a in PCV2- infected and non-infected domestic pigs and wild boars from Uruguay, Vet. Microbiol, 224, 78, 10.1016/j.vetmic.2018.08.029
Singh, 2018, Potential for the cross-species transmission of swine torque teno viruses, Vet. Microbiol, 215, 66, 10.1016/j.vetmic.2017.12.017
Sarairah, 2020, The molecular epidemiology and phylogeny of Torque Teno Virus (TTV) in Jordan, Viruses, 12, 10.3390/v12020165
Okamoto, 2009, TT viruses in animals, Curr. Top. Microbiol Immunol., 331, 35
Kekarainen, 2012, Torque teno sus virus in pigs: an emerging pathogen?, Transbound. Emerg. Dis., 59, 103, 10.1111/j.1865-1682.2011.01289.x
Zhang, 2014, Faecal virome of cats in an animal shelter, J. Gen. Virol., 95, 2553, 10.1099/vir.0.069674-0
Deng, 2015, An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data, Nucleic Acids Res, 43, 10.1093/nar/gkv002
Skewes-Cox, 2014, Profile hidden Markov models for the detection of viruses within metagenomic sequence data, PLoS One, 9, 10.1371/journal.pone.0105067
Eddy, 2009, A new generation of homology search tools based on probabilistic inference, Genome Inf., 23, 205
Finn, 2011, HMMER web server: interactive sequence similarity searching, Nucleic Acids Res, 39, W29, 10.1093/nar/gkr367
Johnson, 2010, Hidden Markov model speed heuristic and iterative HMM search procedure, BMC Bioinforma., 11, 10.1186/1471-2105-11-431
Kearse, 2012, Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data, Bioinformatics, 28, 1647, 10.1093/bioinformatics/bts199
Kumar, 2016, MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets, Mol. Biol. Evol., 33, 1870, 10.1093/molbev/msw054
Kuraku, 2013, aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity, Nucleic Acids Res, 41, W22, 10.1093/nar/gkt389
Ronquist, 2012, MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space, Syst. Biol., 61, 539, 10.1093/sysbio/sys029
Muhire, 2014, SDT: a virus classification tool based on pairwise sequence alignment and identity calculation, PLoS One, 9, 10.1371/journal.pone.0108277
Martin, 2015, RDP4: Detection and analysis of recombination patterns in virus genomes, Virus Evol., 1, 10.1093/ve/vev003
Mostafa, 2020, Metagenomic next-generation sequencing of nasopharyngeal specimens collected from confirmed and suspect COVID-19 patients, mBio, 11, 10.1128/mBio.01969-20
Aggarwala, 2017, Viral communities of the human gut: metagenomic analysis of composition and dynamics, Mob. DNA, 8, 10.1186/s13100-017-0095-y
Hannigan, 2017, Evolutionary and functional implications of hypervariable loci within the skin virome, PeerJ, 5, 10.7717/peerj.2959
Kaczorowska, 2020, Human anelloviruses: diverse, omnipresent and commensal members of the virome, FEMS Microbiol Rev., 44, 305, 10.1093/femsre/fuaa007
Hassuna, 2017, Phylogenetic analysis of torque teno virus in thalassemic children in Egypt, Intervirology, 60, 102, 10.1159/000480507
Loutfy, 2009, SEN virus infection in Egyptian patients undergoing maintenance hemodialysis: prevalence and clinical importance, J. Microbiol Immunol. Infect., 42, 464
Azzi, 2001, TT virus contaminates first-generation recombinant factor VIII concentrates, Blood, 98, 2571, 10.1182/blood.V98.8.2571
Charlton, 1998, TT-virus infection in North American blood donors, patients with fulminant hepatic failure, and cryptogenic cirrhosis, Hepatology, 28, 839, 10.1002/hep.510280335
Umemura, 2003, Investigation of SEN virus infection in patients with cryptogenic acute liver failure, hepatitis-associated aplastic anemia, or acute and chronic non-A-E hepatitis, J. Infect. Dis., 188, 1545, 10.1086/379216
Sampietro, 2001, TT virus infection in adult beta-thalassemia major patients, Haematologica, 86, 39
Tuveri, 2000, Impact of TT virus infection in acute and chronic, viral- and non viral-related liver diseases, J. Hepatol., 33, 121, 10.1016/S0168-8278(00)80168-3