Identification of gene-specific DNA methylation signature for Colorectal Cancer

Cancer Genetics - Tập 228 - Trang 5-11 - 2018
Kaixue Li1, Li Zeng1, Hong Wei1, Jingjing Hu1, Lu Jiao1, Juan Zhang1, Ying Xiong1
1Department of Gastroenterology, The Second People's Hospital of Shenzhen, the First Affiliated Hospital of Shenzhen University, Shenzhen 518035, China

Tài liệu tham khảo

Reis, 2000 Jemal, 2007, Cancer statistics, 2007. CA: Cancer J Clin, 57, 43 Society, A.C., American cancer Society: cancer facts and figures 2016. American Cancer Society Atlanta, GA; 2015. Teixeira, 2015, Can we respect the principles of oncologic resection in an emergency surgery to treat colon cancer?, World J Emerg Surg, 10, 5, 10.1186/1749-7922-10-5 Eslamizadeh, 2018, The role of MicroRNA signature as diagnostic biomarkers in different clinical stages of colorectal cancer, Cell J, 20, 220 Anjum, 2014, A BRCA1-mutation associated DNA methylation signature in blood cells predicts sporadic breast cancer incidence and survival, Genome Med, 6, 47, 10.1186/gm567 Gaedcke, 2014, Identification of a DNA methylation signature to predict disease-free survival in locally advanced rectal cancer, Oncotarget, 5, 8123, 10.18632/oncotarget.2347 Kostareli, 2013, HPV-related methylation signature predicts survival in oropharyngeal squamous cell carcinomas, J Clin Invest, 123, 2488, 10.1172/JCI67010 Zhou, 2015, A potential signature of eight long non-coding RNAs predicts survival in patients with non-small cell lung cancer, J Transl Med, 13, 10.1186/s12967-015-0556-3 Mito, 2018, Lectin ZG16p inhibits proliferation of human colorectal cancer cells via its carbohydrate-binding sites, Glycobiology, 28, 21, 10.1093/glycob/cwx088 Ehrlich, 2002, DNA hypomethylation, cancer, the immunodeficiency, centromeric region instability, facial anomalies syndrome and chromosomal rearrangements, J Nutr, 132, 10.1093/jn/132.8.2424S Lengauer, 1997, DNA methylation and genetic instability in colorectal cancer cells, Proc Natl Acad Sci, 94, 2545, 10.1073/pnas.94.6.2545 Gao, 2008, Variable DNA methylation patterns associated with progression of disease in hepatocellular carcinomas, Carcinogenesis, 29, 1901, 10.1093/carcin/bgn170 Liu, 2012, Epigenetic genes regulated by the BRAFV600E signaling are associated with alterations in the methylation and expression of tumor suppressor genes and patient survival in melanoma, Biochem Biophys Res Commun, 425, 45, 10.1016/j.bbrc.2012.07.046 Gibbons, 2002, Judging the quality of gene expression-based clustering methods using gene annotation, Genome Res., 12, 1574, 10.1101/gr.397002 Tusher, 2001, Significance analysis of microarrays applied to the ionizing radiation response, Proc Natl Acad Sci, 98, 5116, 10.1073/pnas.091062498 Rich, 2010, A practical guide to understanding Kaplan–Meier curves, Otolaryngol Head Neck Surg, 143, 331, 10.1016/j.otohns.2010.05.007 Ashburner, 2000, Gene ontology: tool for the unification of biology. The Gene Ontology Consortium, Nat. Genet., 25, 25, 10.1038/75556 Deaton, 2011, CpG islands and the regulation of transcription, Genes Dev, 25, 1010, 10.1101/gad.2037511 Jones, 2012, Functions of DNA methylation: islands, start sites, gene bodies and beyond, Nat Rev Genet, 13, 484, 10.1038/nrg3230 Robertson, 2005, DNA methylation and human disease, Nat Rev Genet, 6, 597, 10.1038/nrg1655 Tate, 1993, Effects of DNA methylation on DNA-binding proteins and gene expression, Curr Opin Genet Dev, 3, 226, 10.1016/0959-437X(93)90027-M Chen, 1998, DNA hypomethylation leads to elevated mutation rates, Nature, 395, 89, 10.1038/25779 Vilain, 1999, DNA methylation and chromosome instability in breast cancer cell lines, FEBS Lett, 460, 231, 10.1016/S0014-5793(99)01358-7 Feinberg, 2004, The history of cancer epigenetics, Nat Rev Cancer, 4, 143, 10.1038/nrc1279 Baylin, 2000, DNA hypermethylation in tumorigenesis: epigenetics joins genetics, Trends Genet, 16, 168, 10.1016/S0168-9525(99)01971-X Kastan, 2004, Cell-cycle checkpoints and cancer, Nature, 432, 316, 10.1038/nature03097