Identification of diverse novel genomoviruses in gut of wild birds

Biosafety and Health - Tập 3 - Trang 136-141 - 2021
Yuxin Yao1, Haisheng Wu2, Guangming Sun3, Shixing Yang1, Quan Shen1, Xiaochun Wang1, Wen Zhang1
1School of Medicine, Jiangsu University, Zhenjiang 212013, China
2Qinghai Institute for Endemic Disease Prevention and Control, Xining, 811602, China
3Xuzhou Central Hospital, 131 Huanchen Road, Xuzhou 221009, China

Tài liệu tham khảo

Krupovic, 2016, Genomoviridae: a new family of widespread single-stranded DNA viruses, J. Arch. Virol., 161, 2633, 10.1007/s00705-016-2943-3 Yu, 2010, A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus, J. Proc. Natl. Acad. Sci. U.S.A., 107, 8387, 10.1073/pnas.0913535107 Fontenele, 2020, Diverse genomoviruses representing twenty-nine species identified associated with plants, J. Arch. Virol., 165, 2891, 10.1007/s00705-020-04801-5 Sikorski, 2013, Novel myco-like DNA viruses discovered in the faecal matter of various animals, J. Virus. Res., 177, 209, 10.1016/j.virusres.2013.08.008 Steel, 2016, Circular replication-associated protein encoding DNA viruses identified in the faecal matter of various animals in New Zealand, Infect. Genet. Evol., 43, 151, 10.1016/j.meegid.2016.05.008 Schmidlin, 2019, Diverse genomoviruses representing eight new and one known species identified in feces and nests of house finches (Haemorhous mexicanus), J. Arch. Virol., 164, 2345, 10.1007/s00705-019-04318-6 Hanna, 2015, Isolation of a complete circular virus genome sequence from an Alaskan black-capped chickadee (Poecile atricapillus) gastrointestinal tract sample, J. Genome Announce, 3 Kaszab, 2020, Publisher correction: occurrence and genetic diversity of CRESS DNA viruses in wild birds: a Hungarian study, J. Sci. Rep., 10, 10301, 10.1038/s41598-020-67585-3 Zhang, 2017, Virome comparisons in wild-diseased and healthy captive giant pandas, J. Microbiome, 5, 90, 10.1186/s40168-017-0308-0 Wang, 2019, The fecal virome of red-crowned cranes, J. Arch. Virol., 164, 3, 10.1007/s00705-018-4037-x Luo, 2015, Erratum: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler, J. GigaSci., 4, 30, 10.1186/s13742-015-0069-2 Deng, 2015, An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data, J. Nucleic Acids Res., 43, 10.1093/nar/gkv002 Muhire, 2014, SDT: a virus classification tool based on pairwise sequence alignment and identity calculation, J. PloS One, 9, 10.1371/journal.pone.0108277 Varsani, 2017, Genomoviridae Sequence-based taxonomic framework for the classification of uncultured single-stranded DNA viruses of the family, J. Virus Evol., 3 Ronquist, 2012, MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space, J. Syst. Biol., 61, 539, 10.1093/sysbio/sys029 E. RC, 2004, MUSCLE: multiple sequence alignment with high accuracy and high throughput, J. Nucleic Acids Res., 32, 1792, 10.1093/nar/gkh340 NetGene2 Server Wille, 2019, Serologic evidence of exposure to highly pathogenic avian influenza H5 viruses in migratory shorebirds, Australia, J. Emerging Infect. Dis., 25, 1903, 10.3201/eid2510.190699 Di Giallonardo, 2016, Fluid spatial dynamics of West Nile virus in the United States: rapid spread in a permissive host environment, J. J. Virol., 90, 862, 10.1128/JVI.02305-15 Multiple Em for Motif Elicitation