Identification of Up-Regulated Genes After Complete Spinal Cord Transection in Adult Rats

Abel, T., Bhatt, R., and Maniatis, T. A. (1992). Drosophila CREB/ATF transcriptional activator binds to both fat body- and liver-specific regulatory elements. Genes Dev. 6(3):466–480.

Akopyants, N. S., Fradkov, A., Diatchenko, L., Hill, J. E., Siebert, P. D., Lukyanov, S. A., Sverdlov, E. D., and Berg, D. E. (1998). PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori. Proc. Natl. Acad. Sci. U S A 95(22):13108–13113.

Betsuyaku, T., Kadomatsu, K., Griffin, G. L., Muramatsu, T., and Senior, R. M. (2003). Increased basigin in bleomycin-induced lung injury. Am. J. Respir. Cell Mol. Biol. 28(5):600–606.

Caggiano, A. O., Zimber, M. P., Ganguly, A., Blight, A. R., and Gruskin, E. A. (2005). Chondroitinase ABCI improves locomotion and bladder function following contusion injury of the rat spinal cord. J. Neurotrauma 22(2):226–239.

Chen, M. S., Huber, A. B., van der Haar, M. E., Frank, M., Schnell, L., Spillmann, A. A., Christ, F., and Schwab, M. E. (2000). Nogo-A is a myelin-associated neurite outgrowth inhibitor and an antigen for monoclonal antibody IN-1. Nature 403:434–439

Chopp, M., Zhang, X. H., Li, Y., Wang, L., Chen, J., Lu, D., Lu, M., and Rosenblum, M. (2000). Spinal cord injury in rat: Treatment with bone marrow stromal cell transplantation. Neuroreport 11(13):3001–3005.

DeMattos, R. B., O’dell, M. A., Parsadanian, M., Taylor, J. W, Harmony, J. A., Bales, K. R., Paul, S. M., Aronow, B. J., and Holtzman, D. M. (2002). Clusterin promotes amyloid plaque formation and is critical for neuritic toxicity in a mouse model of Alzheimer's disease. Proc. Natl. Acad. Sci. USA 99(16):10843–10848.

Di Scala, F., Dupuis, L., Gaiddon, C., De. Tapia, M., Jokic, N., Gonzalez de Aguilar, J. L., Raul, J. S., Ludes, B., and Loeffler, J. P. (2005). Tissue specificity and regulation of the N-terminal diversity of reticulon 3. Biochem. J. 385(Pt 1):125–134.

Duguid, J. R., and Dinauer, M. C. (1990). Library subtraction of in vitro cDNA libraries to identify differentially expressed genes in scrapie infection. Nucleic Acids Res. 18(9):2789–2792.

Fan, Q. W., Yuasa, S., Kuno, N., Senda, T., Kobayashi, M., Muramatsu, T., and Kadomatsu, K. (1998). Expression of basigin, a member of the immunoglobulin superfamily, in the mouse central nervous system. Neurosci. Res. 30(1):53–63.

GrandPran, T., Nakamura, F., Vartanian, T., and Strittmatter, S. M. (2000). Identification of the Nogo inhibitor of axon regeneration as a Reticulon protein. Nature 403:439–444

Guth, L., Zhang, Z., DiProspero, N. A., Joubin, K., and Fitch, M. T. (1994). Spinal cord injury in the rat: treatment with bacterial lipopolysaccharide and indomethacin enhances cellular repair and locomotor function. Exp. Neurol. 126(1):76–87.

Heller, M., von der Ohe, M., Kleene, R., Mohajeri, M. H., and Schachner, M. (2003). The immunoglobulin-superfamily molecule basigin is a binding protein for oligomannosidic carbohydrates: An anti-idiotypic approach. J. Neurochem. 84(3):557–65.

He, W., Lu, Y., Qahwash, I., Hu, X. Y., Chang, A., and Yan, R. (2004). Eticulon family members modulate BACE1 activity and amyloid-beta peptide generation. Nat. Med. 10(9):959–965.

Ip, N. Y., Stitt, T. N., Tapley, P., Klein, R., Glass, D. J., Fandl, J., Greene, L. A., Barbacid, M., and Yancopoulos, G. D. (1993). Similarities and differences in the way neurotrophins interact with the Trk receptors in neuronal and nonneuronal cells. Neuron 10(2):137–149.

Iwahashi, J., Kawasaki, I., Kohara, Y., Gengyo-Ando, K., Mitani, S., Ohshima, Y., Hamada, N., Hara, K., Kashiwagi, T., and Toyoda, T. (2002). Caenorhabditis elegans reticulon interacts with RME-1 during embryogenesis. Biochem. Biophys. Res. Commun. 293(2):698–704.

Liu, L., Persson, J. K., Svensson, M., Aldskogius, H. (1998). Glial cell responses, complement, and clusterin in the central nervous system following dorsal root transection. Glia 23(3):221–238.

Mavrodi, D. V., Mavrodi, O. V., McSpadden-Gardener, B. B., Landa, B. B., Weller, D. M., and Thomashow, L. S. (2002). Identification of differences in genome content among phlD-positive Pseudomonas fluorescens strains by using PCR-based subtractive hybridization. Appl. Environ. Microbiol. 68(10):5170–5176.

Mitsumoto, Y., Watanabe, A., Miyauchi, T., Jimma, F., and Moriizumi, T. (2001). Stimulation of the regrowth of MPP+-damaged dopaminergic fibers by the treatment of mesencephalic cultures with basigin. J. Neural Transm. 108(10):1127–1134.

Namiki, J., and Tator, C. H. (1999). Cell proliferation and nestin expression in the ependyma of the adult rat spinal cord after injury. J. Neuropathol. Exp. Neurol. 58(5):489–498.

Nehme, C. L., Fayos, B. E., and Bartles, J. R. (1995). Distribution of the integral plasma membrane glycoprotein CE9 (MRC OX-47) among rat tissues and its induction by diverse stimuli of metabolic activation. Biochem. J. 310:693–698.

Oudega, M., and Marani, E. (1991). Expression of vimentin and glial fibrillary acidic protein in the developing rat spinal cord: An immunocytochemical study of the spinal cord glial system. J. Anat. 179:97–114.

Panagopoulos, I., Storlazzi, C. T., Fletcher, C. D. M., Fletcher, J. A., Nascimento, A., Domanski, H. A., Wejde, J., Brosjo, O., Rydholm, A., Isaksson, M., Mandahl, N., and Mertens, F. (2004). The chimeric FUS/CREB3L2 gene is specific for low-grade fibromyxoid sarcoma. Genes Chromosomes Cancer 40:218–228.

Pekny, M., Johansson, C. B., Eliasson, C., Stakeberg, J., Wallen, A., Perlmann, T., Lendahl, U., Betsholtz, C., Berthold, C. H., and Frisen, J. (1999). Abnormal reaction to central nervous system injury in mice lacking glial fibrillary acidic protein and vimentin. J. Cell. Biol. 145(3):503–514.

Perlson, E., Hanz, S., Ben-Yaakov, K., Segal-Ruder, Y., Seger, R., and Fainzilber, M. (2005). Vimentin-dependent spatial translocation of an activated MAP kinase in injured nerve. Neuron 45(5):715–726.

Schwab, M. E., and Bartholdi, D. (1996). Degeneration and regeneration of axons in the lesioned spinal cord. Physiol. Rev. 76(2):319–370.

Tanaka, H., Yamashita, T., Yachi, K., Fujiwara, T., Yoshikawa, H., and Tohyama, M. (2004). Cytoplasmic p21(Cip1/WAF1) enhances axonal regeneration and functional recovery after spinal cord injury in rats. Neuroscience 127(1):155–164.

Tornqvist, E., Liu, L., Aldskogius, H., Holst, H. V., and Svensson, M. (1996). Complement and clusterin in the injured nervous system. Neurobiol. Aging 17(5):695–705.

Toyama, Y., Maekawa, M., Kadomatsu, K., Miyauchi, T., Muramatsu, T., and Yuasa, S. (1999). Histological characterization of defective spermatogenesis in mice lacking the basigin gene. Anat. Histol. Embryol. 28(3):205–213.

Tyor, W. R., Avgeropoulos, N., Ohlandt, G., and Hogan, E. L. (2002). Treatment of spinal cord impact injury in the rat with transforming growth factor-beta. J. Neurol. Sci. 200(1–2):33–41.

Wildasin, K. (2004). Role of reticulon proteins in Alzheimer's disease. Lancet Neurol. 3(10):576.

Yoshida, M., Sugimoto, A., Ohshima, Y., and Takeshima, H. (2001). Important role of junctophilin in nematode motor function. Biochem. Biophys. Res. Commun. 289(1):234–239.

Zhang, K. H., Xiao, H. S., Lu, P. H., Shi, J., Li, G. D., Wang, Y. T., Han, S., Zhang, F. X., Lu, Y. J., Zhang, X., and Xu, X. M. (2004). Differential gene expression after complete spinal cord transection in adult rats: An analysis focused on a subchronic post-injury stage. Neuroscience 128(2):375–388.

Zhu, F., Yan, W., Zhan zl Chai, Y. B., Lu, F., Wang, Q., Peng, W. D., Yang, A. G., and Wang, C. J. (2000). Improved PCR-based subtractive hybridization strategy for cloning differentially expressed genes. Biotechniques 29(2):310–310.