Identification and comparison of candidate odorant receptor genes in the olfactory and non-olfactory organs of Holotrichia oblita Faldermann by transcriptome analysis

Abuin, 2011, Functional architecture of olfactory ionotropic glutamate receptors, Neuron, 69, 44, 10.1016/j.neuron.2010.11.042 Ai, 2010, Acid sensing by the Drosophila olfactory system, Nature, 468, 691, 10.1038/nature09537 Andersson, 2013, Antennal transcriptome analysis of the chemosensory gene families in the tree killing bark beetles, Ips typographus and Dendroctonus ponderosae (Coleoptera: Curculionidae: Scolytinae), BMC Genomics, 14, 198, 10.1186/1471-2164-14-198 Antony, 2016, Identification of the genes involved in odorant reception and detection in the palm weevil Rhynchophorus ferrugineus, an important quarantine pest, by antennal transcriptome analysis, BMC Genomics, 17, 69, 10.1186/s12864-016-2362-6 Bartelt, 2001, Male-specific sesquiterpenes from Phyllotreta and Aphthona flea beetles, J. Chem. Ecol., 27, 2397, 10.1023/A:1013667229345 Bartelt, 2009, Male-produced aggregation pheromone of the lesser mealworm beetle, Alphitobius diaperinus, J. Chem. Ecol., 35, 422, 10.1007/s10886-009-9611-y Bartelt, 2011, Male-specific sesquiterpenes from Phyllotreta flea beetles, J. Nat. Prod., 74, 585, 10.1021/np100608p Benton, 2006, Atypical membrane topology and heteromeric function of Drosophila odorant receptors in vivo, PLoS Biol., 4, 10.1371/journal.pbio.0040020 Benton, 2009, Variant ionotropic glutamate receptors as chemosensory receptors in Drosophila, Cell, 136, 149, 10.1016/j.cell.2008.12.001 Bigiani, 2005, Pheromone reception in mammals, Rev. Physiol. Biochem. Pharmacol., 154, 1 Cao, 2014, Identification of candidate olfactory genes in Chilo suppressalis by antennal transcriptome analysis, Int. J. Biol. Sci., 10, 846, 10.7150/ijbs.9297 Clyne, 1999, A novel family of divergent seven-transmembrane proteins: candidate odorant receptors in Drosophila, Neuron, 22, 327, 10.1016/S0896-6273(00)81093-4 Conesa, 2005, Blast 2 GO: a universal tool for annotation, visualization and analysis in functional genomics research, Bioinformatics, 21, 3674, 10.1093/bioinformatics/bti610 Couto, 2005, Molecular, anatomical, and functional organization of the Drosophila olfactory system, Curr. Biol., 15, 1535, 10.1016/j.cub.2005.07.034 Croset, 2010, Ancient protostome origin of chemosensory ionotropic glutamate receptors and the evolution of insect taste and olfaction, PLoS Genet., 6, 10.1371/journal.pgen.1001064 Deng, 2011, Electroannographic and behavioral responses of Holotrichia oblita to plant volatiles, Plant Prot., 37, 62 Deng, 2012, Function and immunocytochemical localization of two novel odorant-binding proteins in olfactory sensilla of the scarab beetle Holotrichia oblita Faldermann (Coleoptera: Scarabaeidae), Chem. Senses, 37, 141, 10.1093/chemse/bjr084 Engsontia, 2008, The red flour beetle's large nose: an expanded odorant receptor gene family in Tribolium castaneum, Insect Biochem. Mol. Biol., 38, 387, 10.1016/j.ibmb.2007.10.005 Fuss, 2009, Mechanisms of odorant receptor gene choice in Drosophila and vertebrates, Mol. Cell. Neurosci., 41, 101, 10.1016/j.mcn.2009.02.014 Gao, 1999, Identification of candidate Drosophila olfactory receptors from genomic DNA sequence, Genomics, 60, 31, 10.1006/geno.1999.5894 Grabherr, 2011, Full-length transcriptome assembly from RNA-Seq data without a reference genome, Nat. Biotechnol., 29, 644, 10.1038/nbt.1883 Hill, 2002, G protein-coupled receptors in Anopheles gambiae, Science, 298, 176, 10.1126/science.1076196 Jones, 2005, Functional conservation of an insect odorant receptor gene across 250Ma of evolution, Curr. Biol., 15, R119, 10.1016/j.cub.2005.02.007 Ju, 2014, Behavioral responses of three scarab beetles to host plants, Plant Prot., 40, 76 Krogh, 2001, Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes, J. Mol. Biol., 305, 567, 10.1006/jmbi.2000.4315 Leal, 2005, Pheromone reception, Top. Curr. Chem., 240, 1 Leal, 2013, Odorant reception in insects: roles of receptors, binding proteins, and degrading enzymes, Annu. Rev. Entomol., 58, 373, 10.1146/annurev-ento-120811-153635 Leal, 2013, Differential expression of olfactory genes in the southern house mosquito and insights into unique odorant receptor gene isoforms, Proc. Natl. Acad. Sci. U. S. A., 110, 18704, 10.1073/pnas.1316059110 Leary, 2012, Single mutation to a sex pheromone receptor provides adaptive specificity between closely related moth species, Proc. Natl. Acad. Sci. U. S. A., 109, 14081, 10.1073/pnas.1204661109 Li, 2015, Candidate chemosensory genes identified in Colaphellus bowringi by antennal transcriptome analysis, BMC Genomics, 16, 10285, 10.1186/s12864-015-2236-3 Li, 2015, Chemosensory gene families in adult antennae of Anomala corpulenta Motschulsky (Coleoptera: Scarabaeidae: Rutelinae), PLoS One, 10 Littleton, 2000, Ion channels and synaptic organization: analysis of the Drosophila genome, Neuron, 26, 35, 10.1016/S0896-6273(00)81135-6 Liu, 2015, Identification of candidate chemosensory genes in the antennal transcriptome of Tenebrio molitor (Coleoptera: Tenebrionidae), Comp. Biochem. Physiol. Part D Genomics Proteomics, 13, 44, 10.1016/j.cbd.2015.01.004 Livak, 2001, Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCt method, Methods, 25, 402, 10.1006/meth.2001.1262 Luo, 2008, Species identification of white grubs in lawns around Beijing and their damage characteristics, Acta Entomol. Sin., 51, 108 Luo, 2009, Investigations on soil-inhabiting pests in peanut fields in Henan, Plant Prot., 35, 104 Madden, 2002, The structure and function of glutamate receptor ion channels, Nat. Rev. Neurosci., 3, 91, 10.1038/nrn725 Min, 2005, OrfPredictor: predicting protein-coding regions in EST-derived sequences, Nucleic Acids Res., 33, 677, 10.1093/nar/gki394 Mitchell, 2012, Sequencing and characterizing odorant receptors of the cerambycid beetle Megacyllene caryae, Insect Biochem. Mol. Biol., 42, 499, 10.1016/j.ibmb.2012.03.007 Mitsuno, 2008, Identification of receptors of main sex-pheromone components of three Lepidopteran species, Eur. J. Neurosci., 28, 893, 10.1111/j.1460-9568.2008.06429.x Nakagawa, 2005, Insect sex-pheromone signals mediated by specific combinations of olfactory receptors, Science, 307, 1638, 10.1126/science.1106267 Nakagawa, 2012, Amino acid residues contributing to function of the heteromeric insect olfactory receptor complex, PLoS One, 7, 10.1371/journal.pone.0032372 Pertea, 2003, TIGR gene indices clustering tools (TGICL): a software system for fast clustering of large EST datasets, Bioinformatics, 19, 651, 10.1093/bioinformatics/btg034 Petersen, 2011, SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat, Methods, 8, 785 Pitts, 2014, Odorant receptor-mediated sperm activation in disease vector mosquitoes, Proc. Natl. Acad. Sci. U. S. A., 111, 2566, 10.1073/pnas.1322923111 Poivet, 2013, A comparison of the olfactory gene repertoires of adults and larvae in the noctuid moth Spodoptera littoralis, PLoS One, 8, 10.1371/journal.pone.0060263 Rao, 2003, Aggregation pheromone of the cereal leaf beetle: field evaluation and emission from males in the laboratory, J. Chem. Ecol., 29, 2165, 10.1023/A:1025698821635 Robertson, 2003, Molecular evolution of the insect chemoreceptor gene superfamily in Drosophila melanogaster, Proc. Natl. Acad. Sci. U. S. A., 100, 14537, 10.1073/pnas.2335847100 Sakurai, 2004, Identification and functional characterization of a sex pheromone receptor in the silkmoth Bombyx mori, Proc. Natl. Acad. Sci. U. S. A., 101, 16653, 10.1073/pnas.0407596101 Sato, 2009, Insect olfaction: receptors, signal transduction, and behavior, Results Probl. Cell Differ., 47, 121 Sievers, 2011, Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal omega, Mol. Syst. Biol., 7, 539, 10.1038/msb.2011.75 Soroka, 2005, Responses of flea beetle Phyllotreta Cruciferae to synthetic aggregation pheromone components and host plant volatiles in field trials, J. Chem. Ecol., 31, 1829, 10.1007/s10886-005-5929-2 Swarup, 2011, Functional dissection of odorant binding protein genes in Drosophila melanogaster, Genes Brain Behav., 10, 648, 10.1111/j.1601-183X.2011.00704.x Wang, 2012, Molecular cloning and sequence analysis of the odorant receptor gene OrCo in Holotrichia oblita, Plant Prot., 38, 14 Wang, 2013, Potential Cooperations between Odorant-Binding Proteins of the Scarab Beetle Holotrichia oblita Faldermann (Coleoptera: Scarabaeidae), PLoS One, 8 Wang, 2014, Analysis of chemosensory gene families in the beetle Monochamus alternatus and its parasitoid Dastarcus helophoroides, Comp. Biochem. Physiol. Part D Genomics Proteomics, 11, 1, 10.1016/j.cbd.2014.05.001 Wang, 2016, Identification and comparison of candidate odorant genes in the olfactory and non-olfactory organs of elm pest Ambrostoma quadriimpressum (Coleoptera: Chry.Somelidae) based on transcriptome analysis, PLoS One, 11, e0147144, 10.1371/journal.pone.0147144 Wetzel, 2001, Functional expression and characterization of a Drosophila odorant receptor in a heterologous cell system, Proc. Natl. Acad. Sci. U. S. A., 98, 9377, 10.1073/pnas.151103998 Xia, 2008, The molecular and cellular basis of olfactory-driven behavior in Anopheles gambiae larvae, Proc. Natl. Acad. Sci. U. S. A., 105, 6433, 10.1073/pnas.0801007105 Xu, 2005, Drosophila OBP LUSH is required for activity of pheromone-sensitive neurons, Neuron, 45, 193, 10.1016/j.neuron.2004.12.031 Zeng, 2015, Identification and comparative expression profiles of chemoreception genes revealed from major chemoreception organs of the rice leaf folder, Cnaphalocrocis medinalis (Lepidoptera: Pyralidae), PLoS One, 10, 10.1371/journal.pone.0144267 Zhang, 2006, A study on the attraction of Holotrichia oblita (Fadermann) to castor leaves, J. Henan Agric. Univ., 40, 53 Zhang, 2015, Antennal transcriptome analysis and comparison of chemosensory gene families in two closely related noctuidae moths, Helicoverpa armigera and H. assulta, PLoS One, 10, e0117054, 10.1371/journal.pone.0117054 Zhang, 2015, Pheromone reception in moths: from molecules to behaviors, Prog. Mol. Biol. Transl. Sci., 130, 109, 10.1016/bs.pmbts.2014.11.005 Zhuang, 2014, Prediction of the key binding site of odorant-binding protein of Holotrichia oblita Faldermann (Coleoptera: Scarabaeida), Insect Mol. Biol., 23, 381