Identification and characterization of five new OP2-related Myoviridae bacteriophages infecting different strains of Xanthomonas oryzae pv. oryzae
Tóm tắt
Từ khóa
Tài liệu tham khảo
Adams MJ, Carstens EB (2012) Ratification vote on taxonomic proposals to the international committee on taxonomy of viruses. Arch Virol 157:1411–1422
Ahmad AA, Askora A, Kawasaki T, Fujie M, Yamada T (2014) The filamentous phage XacF1 causes loss of virulence in Xanthomonas axonopodis pv. citri, the causative agent of citrus canker disease. Front Microbiol 5:321
Azeredo J, Sutherland IW (2008) The use of phages for the removal of infectious biofilms. Curr Pharm Biotechnol 9:261–266
Bae JY, Wu J, Lee HJ, Jo EJ, Murugaiyan S, Chung E, Lee SW (2012) Biocontrol potential of a lytic bacteriophage PE204 against bacterial wilt of tomato. J Microbiol Biotechnol 22:1613–1620
Bhunchoth A, Phironrit N, Leksomboon C, Chatchawankanphanich O, Kotera S, Narulita E, Kawasaki T, Fujie M, Yamada T (2015) Isolation of Ralstonia solanacearum-infecting bacteriophages from tomato fields in Chiang Mai, Thailand, and their experimental use as biocontrol agents. J Appl Microbiol 118:1023–1033
Buttimer C, McAuliffe O, Ross RP, Hill C, O'Mahony J, Coffey A (2017) Bacteriophages and bacterial plant diseases. Front Microbiol 8:34
Chae JC, Hung NB, Yu SM, Lee HK, Lee YH (2014) Diversity of bacteriophages infecting Xanthomonas oryzae pv. oryzae in Paddy fields and its potential to control bacterial leaf blight of Rice. J Microbiol Biotechnol 24:740–747
Clokie MRJ, Kropinski AM (2009) Bacteriophages, Methods and Protocols: Isolation, Characterization, and Interactions Vol 1 (pp. 307)
Doffkay Z, Doemoetoer D, Kovacs T, Rakhely G (2015) Bacteriophage therapy against plant, animal and human pathogens. Acta Biologica Szegediensis 59:291–302
Ezuka A, Kaku H (2000) A historical review of bacterial blight of rice. Bull Natl Inst Agrobiol Resour 15:61–74
Felsenstein J (1981) Evolutionary trees from dna-sequences - a maximum-likelihood approach. J Mol Evol 17:368–376
Flaherty JE, Harbaugh BK, Jones JB, Somodi GC, Jackson LE (2001) H-mutant bacteriophages as a potential biocontrol of bacterial blight of geranium. Hortscience 36:98–100
Guo Y, Sagaram US, Kim J, Wang N (2010) Requirement of the galU gene for polysaccharide production by and pathogenicity and growth in planta of Xanthomonas citri subsp citri. Appl Environ Microbiol 76:2234–2242
Hughes KA, Sutherland IW, Clark JT, Jones MV (1998) Bacteriophage and associated polysaccharide depolymerases--novel tools for study of bacterial biofilms. J Appl Microbiol 85:583–590
Inoue Y, Matsuura T, Ohara T, Azegami K (2006a) Sequence analysis of the genome of OP2, a lytic bacteriophage of Xanthomonas oryzae pv. oryzae. J. Gen. Plant Pathol 172:104–110
Inoue Y, Matsuura T, Ohara T, Azegami K (2006b) Bacteriophage OP1, lytic for Xanthomonas oryzae pv. oryzae, changes its host range by duplication and deletion of the small domain in the deduced tail fiber gene. J. Gen. Plant Pathol 172:111–118
Ji ZY, Ji CH, Liu B, Zou LF, Chen GY, Yang B (2016) Interfering TAL effectors of Xanthomonas oryzae neutralize R-gene-mediated plant disease resistance. Nat Commun 7:13435
Jones JB, Jackson LE, Balogh B, Obradovic A, Iriarte FB, Momol MT (2007) Bacteriophages for plant disease control. Annu Rev Phytopathol 45:245–262
Kauffman HE, Reddy APK, Hsieh SPY, Nerca SD (1973) An improved technique for evaluating resistance of rice varieties to Xanthomonas oryzae. Plant Dis Rep 56:537–541
Kuo TT, Huang TC, Chow TY (1969) A filamentous bacteriophage from Xanthomonas oryzae. Virology 39:548–555
Kuo TT, Cheng LC, Yang CM, Yang SE (1971) Bacterial leaf blight of rice plant IV. Effect of bacteriophages on the infectivity of Xanthomonas oryzae. Bot Bull Acad Sinica 12:1–9
Lang JM, Gent DH, Schwartz HF (2007) Management of Xanthomonas leaf blight of onion with bacteriophages and a plant activator. Plant Dis 91:871–878
Lavigne R, Darius P, Summer EJ, Seto D, Mahadevan P, Nilsson AS, Ackermann HW, Kropinski AM (2009) Classification of Myoviridae bacteriophages using protein sequence similarity. BMC Microbiol 9:224
Lee CN, Lin JW, Chow TY, Tseng YH, Weng SF (2006) A novel lysozyme from Xanthomonas oryzae phage phi Xo411 active against Xanthomonas and Stenotrophomonas. Protein Expr Purif 50:229–237
Lee CN, Hu RM, Chow TY, Lin JW, Cheb HY, Tseng YH, Weng SF (2007) Comparison of genomes of three Xanthomonas oryzae bacteriophages. BMC Genomics 8:442–453
Lee CN, Lin JW, Weng SF, Tseng YH (2009) Genomic characterization of the intron-containing T7-like phage phiL7 of Xanthomonas campestris. Appl Environ Microbiol 75:7828–7837
Li B, Liu B, Yu R, Tao Z, Wang Y, Xie G, Li H, Sun G (2011) Bacterial brown stripe of rice in soil-less culture system caused by Acidovorax avenae subsp. avenae in China. J Gen Plant Pathol 197:673–682
Lin N, You BY, Huang CY, Kuo CW, Wen FS, Yang JS, YH T (1994) Characterization of two novel filamentous phages of Xanthomonas. J Gen Virol 5:2543–2547
Mew TW (1987) Current status and future-prospects of research on bacterial-blight of rice. Annu Rev Phytopathol 25:359–382
Momol MT, Jones JB, Olson SM, Obradovic A, Balogh B, King P (2002) Integrated management of bacterial spot on tomato in Florida. Rep PP192, EDIS, Inst Food Agric Sci, Univ FL
Nagy JK, Kiraly L, Ildiko S (2012) Phage therapy for plant disease control with a focus on fire blight. Cent Eur J Biol 7:1–12
Pradhan BB, Ranjan M, Chatterjee S (2012) XadM, a novel adhesin of Xanthomonas oryzae pv. oryzae, exhibits similarity to Rhs family proteins and is required for optimum attachment, biofilm formation, and virulence. Mol Plant-Microbe Interact 25:1157–1170
Ramey BE, Koutsoudis M, von Bodman SB, Fuqua C (2004) Biofilm formation in plant-microbe associations. Curr Opin Microbiol 7:602–609
Rigano LA, Siciliano F, Enrique R, Sendin L, Filippone P, Torres PS, Questa J, Dow JM, Castagnaro AP, Vojnov AA, Marano MR (2007) Biofilm formation, epiphytic fitness, and canker development in Xanthomonas axonopodis pv. citri. Mol Plant-Microbe Interact 20:1222–1230
Saccardi A, Gambin E, Zaccardelli M, Barone G, Mazzuchi U (1993) Xanthomonas campestris pv. pruni control trials with phage treatments on peaches in the orchad. Phytopathol Mediterr 32:206–210
Saitou N, Nei M (1987) The neighbor-joining method - a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
Sambrook J, Fritsch E, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor laboratory press, 2nd edn. Cold Spring Harbor, New York
Sutherland IW, Hughes KA, Skillman LC, Tait K (2004) The interaction of phage and biofilms. FEMS Microbiol Lett 232:1–6
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680
Turner S, Pryer KM, Miao VPW, Palmer JD (1999) Investigating deep phylogenetic relationships among cyanobacteria and plastids by small submit rRNA sequence analysis. J Eukaryot Microbiol 46:327–338
Wakimoto SS (1960) Classification of strains of Xanthomonas oryzae on the basis of their susceptibility against bacteriophages. Ann Phytopathol Soc Jpn 25:193–198
Worthington RJ, Rogers SA, Huigens RW III, Melander C, Ritchie DF (2012) Foliar-applied small molecule that suppresses biofilm formation and enhances control of copper-resistant Xanthomonas euvesicatoria on pepper. Plant Dis 96:1638–1644
Xu Z, Chu C, Fang C, Chu L, H L (1980) Application of phage technique in forecasting the bacterial leaf blight of rice. Acta Phytopathologica Sinica 10:65–70
Xu Z, Zhu J, Lu Q, Fang C, M W (1982) Comparison of some properties of two groups of phage of Xanthomonas oryzae Dowson. Acta Phytopathologica Sinica 12:1–6
Yuzenkova J, Nechaev S, Berlin J, Rogulja D, Kuznedelov K, Inman R, Mushegian A, Severinov K (2003) Genome of Xanthomonas oryzae bacteriophage XP10: an odd T-odd phage. J Mol Biol 330:735–748