Identification and characterization of an interleukin-15 homologue from Tetraodon nigroviridis

Wei Fang1, Li-Xin Xiang1, Jian-Zhong Shao1, Yi Wen1, Shu-Yun Chen1
1College of Life Sciences, Zhejiang University, Hangzhou 310012, People's Republic of China

Tài liệu tham khảo

Altschul, 1990, Basic local alignment search tool, J. Mol. Biol., 215, 403, 10.1016/S0022-2836(05)80360-2 Armitage, 1995, IL-15 has stimulatory activity for the induction of B cell proliferation and differentiation, J. Immunol., 154, 483, 10.4049/jimmunol.154.2.483 Bamford, 1994, The interleukin, (IL) 2 receptor beta chain is shared by IL-2 and a cytokine, provisionally designated IL-T, that stimulates T-cell proliferation and the induction of lymphokine-activated killer cells, Proc. Natl. Acad. Sci. U. S. A., 91, 4940, 10.1073/pnas.91.11.4940 Bazan, 1990, Haemopoietic receptors and helical cytokines, Immunol. Today, 11, 350, 10.1016/0167-5699(90)90139-Z Bei, 2006, Two interleukin (IL)-15 homologues in fish from two distinct origins, Mol. Immunol., 43, 860, 10.1016/j.molimm.2005.06.040 Bendtsen, 2004, Improved prediction of signal peptides: signalP 3.0, J. Mol. Biol., 340, 783, 10.1016/j.jmb.2004.05.028 Bird, 2005, Characterisation and expression analysis of interleukin 2 (IL-2) and IL-21 homologues in the Japanese pufferfish, Fugu rubripes, following their discovery by synteny, Immunogenetics, 56, 909, 10.1007/s00251-004-0741-7 Boulay, 2003, Molecular phylogeny within type I cytokines and their cognate receptors, Immunity, 19, 159, 10.1016/S1074-7613(03)00211-5 Breathnach, 1981, Organization and expression of eucaryotic split genes coding for proteins, Annu. Rev. Biochem., 50, 349, 10.1146/annurev.bi.50.070181.002025 Burge, 1997, Prediction of complete gene structures in human genomic DNA, J. Mol. Biol., 268, 78, 10.1006/jmbi.1997.0951 Caput, 1986, Identification of a common nucleotide sequence in the 3′-untranslated region of mRNA molecules specifying inflammatory mediators, Proc. Natl. Acad. Sci. U. S. A., 83, 1670, 10.1073/pnas.83.6.1670 Carson, 1997, A potential role for interleukin-15 in the regulation of human natural killer cell survival, J. Clin. Invest., 99, 937, 10.1172/JCI119258 Crollius, 2002, Genome-wide comparisons between human and Tetraodon, Ernst. Schering Res. Found., 11 Falquet, 2002, The PROSITE database, its status in 2002, Nucleic Acids Res., 30, 235, 10.1093/nar/30.1.235 Gamero, 1995, Interleukin 15 induction of lymphokine-activated killer cell function against autologous tumor cells in melanoma patient lymphocytes by a CD18-dependent, perforin-related mechanism, Cancer Res., 55, 4988 Gilligan, 2002, Fugu and human sequence comparison identifies novel human genes and conserved non-coding sequences, Gene, 294, 35, 10.1016/S0378-1119(02)00793-X Giri, 1994, Utilization of the beta and gamma chains of the IL-2 receptor by the novel cytokine IL-15, EMBO J., 13, 2822, 10.1002/j.1460-2075.1994.tb06576.x Grabstein, 1994, Cloning of a T cell growth factor that interacts with the beta chain of the interleukin-2 receptor, Science, 264, 965, 10.1126/science.8178155 Hedges, 2002, The origin and evolution of model organisms, Nat. Rev. Genet., 3, 838, 10.1038/nrg929 Jaillon, 2004, Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype, Nature, 431, 946, 10.1038/nature03025 Kent, 2002, BLAT—the BLAST-like alignment tool, Genome Res., 12, 656, 10.1101/gr.229202. Article published online before March 2002 Ku, 2000, Control of homeostasis of CD8+ memory T cells by opposing cytokines, Science, 288, 675, 10.1126/science.288.5466.675 Kumar, 2004, MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment, Brief Bioinform, 5, 150, 10.1093/bib/5.2.150 Laird, 2000, 50 million years of chordate evolution: seeking the origins of adaptive immunity, Proc. Natl. Acad. Sci. U. S. A., 97, 6924, 10.1073/pnas.97.13.6924 Lodolce, 2002, Interleukin-15 and the regulation of lymphoid homeostasis, Mol. Immunol., 39, 537, 10.1016/S0161-5890(02)00211-0 Lutfalla, 2003, Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates: the class II cytokine receptors and their ligands in mammals and fish, BMC Genomics, 4, 29, 10.1186/1471-2164-4-29 Meazza, 1996, Identification of a novel interleukin-15, (IL-15) transcript isoform generated by alternative splicing in human small cell lung cancer cell lines, Oncogene, 12, 2187 Nielsen, 1997, Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites, Protein Eng., 10, 1, 10.1093/protein/10.1.1 Onu, 1997, Regulation of IL-15 secretion via the leader peptide of two IL-15 isoforms, J. Immunol., 158, 255, 10.4049/jimmunol.158.1.255 Pettit, 1997, Structure–function studies of interleukin 15 using site-specific mutagenesis, polyethylene glycol conjugation, and homology modeling, J. Biol. Chem., 272, 2312, 10.1074/jbc.272.4.2312 Rost, 1996, PHD: predicting one-dimensional protein structure by profile-based neural networks, Methods Enzymol., 266, 525, 10.1016/S0076-6879(96)66033-9 Sachs, 1993, Messenger RNA degradation in eukaryotes, Cell, 74, 413, 10.1016/0092-8674(93)80043-E Saitou, 1987, The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol. Biol. Evol., 4, 406 Thompson, 1994, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res., 22, 4673, 10.1093/nar/22.22.4673 Wilkinson, 1995, Chemoattraction of human blood T lymphocytes by interleukin-15, J. Exp. Med., 181, 1255, 10.1084/jem.181.3.1255