Identification and Differentiation of Species and Strains of Arthrobacter and Microbacterium barkeri Isolated from Smear Cheeses with Amplified Ribosmal DNA Restriction Analysis (ARDRA) and Pulsed Field Gel Electrophoresis (PFGE)

Systematic and Applied Microbiology - Tập 26 - Trang 438-444 - 2003
T.S. Hoppe-Seyler1, B. Jaeger1, W. Bockelmann1, W.H. Noordman2, A. Geis1, K.J. Heller1
1Federal Dairy Research Centre, Institute of Microbiology, Kiel, Germany
2NIZO Food Research, Ede, The Netherlands

Tài liệu tham khảo

Bockelmann, 2000, Small scale cheese ripening of bacterial smear cheeses, Milchwissenschaft, 55, 621 Bockelmann, 1997, The microflora of Tilsit cheese. part 2. Development of a surface smear starter culture, Nahrung, 41, 213, 10.1002/food.19970410406 Bockelmann, 1997, The microflora of Tilsit cheese; I. Variability of the smear flora, Nahrung-Food, 41, 208, 10.1002/food.19970410405 Brennan, 2001, Microbacterium gubbeenense sp. nov., from the surface of a smear-ripened cheese, Int. J. Syst. Evol. Microbiol., 51, 1969, 10.1099/00207713-51-6-1969 Brennan, 2002, Biodiversity of the bacterial flora on the surface of a smear cheese, Appl. Environ. Microbiol., 68, 820, 10.1128/AEM.68.2.820-830.2002 Brim, 1999, Amplified rDNA restriction analysis and further genotypic characterisation of metal-resistant soil bacteria and related facultative hydrogenotrophs, System. Appl. Microbiol., 22, 258, 10.1016/S0723-2020(99)80073-3 García-Arata, 1997, PCR-amplified 16S and 23S rDNA restriction analysis for the identification of Acinetobacter strains at the DNA group level, Res. Microbiol., 148, 777, 10.1016/S0923-2508(97)82453-9 Grimond, 1978, The Genus Serratia, Ann. Rev. Microbiol., 32, 221, 10.1146/annurev.mi.32.100178.001253 Hoppe-Seyler, T. S.: Tilsit cheese: development of a defined surface starter culture. Ph.D. thesis. Christian-Albrechts- Universität, Kiel (1998) (in German) Hung, 1990, Megabase DNA analysis: chromosomal DNA preparation, restriction, and pulsed-field electrophoresis, Promega Notes Magazine, 24, 1 Ingianni, 1997, Genotypic differentiation of Gardnerella vaginalis by amplified ribosomal DNA restriction analysis (ARDRA), FEMS Immunol. Med. Microbiol., 18, 61, 10.1111/j.1574-695X.1997.tb01028.x Koch, 1995, Reclassification of Arthrobacter picolinophilus as Rhodococcus erythropolis, Int. J. Syst. Bacteriol., 45, 837, 10.1099/00207713-45-4-837 Koch, 1994, 16S rDNA studies on members of Artbrobacter and Micrococcus: an aid for their taxonomic restructuring, Fems Microbiol. Lett., 123, 162, 10.1111/j.1574-6968.1994.tb07217.x Lee, 1997, Phylogeny and classification of bacteria in the genera Clavibacter and Rathayibacter on the basis of 16S rRNA gene sequence analyses, Appl. Environ. Microbiol., 63, 2631, 10.1128/AEM.63.7.2631-2636.1997 Leenhouts, 1990, Stability of integrated plasmids in the chromosome of Lactococcus lactis, Appl. Environ. Microbiol., 56, 2726, 10.1128/AEM.56.9.2726-2735.1990 Matar, 1999, Identification of Bartonella species directly in clinical specimens by PCR-restriction fragment length polymorphism analysis of a 16S rRNA gene fragment, J. Clin. Microbiol., 37, 4045, 10.1128/JCM.37.12.4045-4047.1999 Moschetti, 1997, Genotyping of Lactobacillus delbrueckii subsp. bulgaricus and determination of the number and forms of rrn operons in L. delbrueckii and its subspecies, Res. Microbiol., 148, 501, 10.1016/S0923-2508(97)88348-9 Olive, 1999, Principles and applications of methods for DNA-based typing of microbial organisms, J. Clin. Microbiol., 37, 1661, 10.1128/JCM.37.6.1661-1669.1999 Rainey, 1994, Further evidence for the phylogenetic coherence of Actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16s rDNA analysis, Fems Microbiology Letters, 118, 135, 10.1111/j.1574-6968.1994.tb06815.x Reps, 1993, Bacterial surface-ripened cheeses, 137 Schwartz, 1984, Separation of yeast chromosomesized DNAs by pulsed field gradient gel electrophoresis, Cell, 37, 67, 10.1016/0092-8674(84)90301-5 Turbett, 1996, Digestion of PCR and RTPCR products with restriction endonucleases without prior purification or precipitation, Promega Notes Magazine, 60, 23 Vaneechoutte, 1995, Identification of Acinetobacter genomic species by amplified ribosomal DNA restriction analysis, J. Clin. Microbiol., 33, 11, 10.1128/JCM.33.1.11-15.1995 Vaneechoutte, 1992, Rapid identification of bacteria of the comamonadaceae with amplified ribosomal DNA-restriction analysis (ARDRA), Fems Microbiol. Lett., 93, 227, 10.1111/j.1574-6968.1992.tb05102.x