Identification and Characterization of an eIF4e DNA Aptamer That Inhibits Proliferation With High Throughput Sequencing
Tài liệu tham khảo
Ellington, 1990, In vitro selection of RNA molecules that bind specific ligands, Nature, 346, 818, 10.1038/346818a0
Tuerk, 1990, Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase, Science, 249, 505, 10.1126/science.2200121
Huizenga, 1995, A DNA aptamer that binds adenosine and ATP., Biochemistry, 34, 656, 10.1021/bi00002a033
Wen, 2009, A novel lipopolysaccharide-antagonizing aptamer protects mice against endotoxemia, Biochem Biophys Res Commun, 382, 140, 10.1016/j.bbrc.2009.02.152
Bock, 1992, Selection of single-stranded DNA molecules that bind and inhibit human thrombin, Nature, 355, 564, 10.1038/355564a0
Stojanovic, 2001, Aptamer-based folding fluorescent sensor for cocaine, J Am Chem Soc, 123, 4928, 10.1021/ja0038171
Gronewold, 2005, Monitoring complex formation in the blood-coagulation cascade using aptamer-coated SAW sensors, Biosens Bioelectron, 20, 2044, 10.1016/j.bios.2004.09.007
McNamara 2nd, 2006, Cell type-specific delivery of siRNAs with aptamer-siRNA chimeras, Nat Biotechnol, 24, 1005, 10.1038/nbt1223
Gu, 2008, Precise engineering of targeted nanoparticles by using self-assembled biointegrated block copolymers, Proc Natl Acad Sci USA., 105, 2586, 10.1073/pnas.0711714105
Teng, 2007, AS1411 alters the localization of a complex containing protein arginine methyltransferase 5 and nucleolin, Cancer Res., 67, 10491, 10.1158/0008-5472.CAN-06-4206
Marimuthu, 2012, Single-stranded DNA (ssDNA) production in DNA aptamer generation, Analyst, 137, 1307, 10.1039/c2an15905h
Boiziau, 1999, DNA aptamers selected against the HIV-1 trans-activation-responsive RNA element form RNA-DNA kissing complexes, J Biol Chem., 274, 12730, 10.1074/jbc.274.18.12730
Cho, 2010, Quantitative selection of DNA aptamers through microfluidic selection and high-throughput sequencing, Proc Natl Acad Sci USA., 107, 15373, 10.1073/pnas.1009331107
Kupakuwana, 2011, Acyclic identification of aptamers for human alpha-thrombin using over-represented libraries and deep sequencing, PLoS ONE., 6, e19395, 10.1371/journal.pone.0019395
Schütze, 2011, Probing the SELEX process with next-generation sequencing, PLoS ONE., 6, e29604, 10.1371/journal.pone.0029604
Ditzler, 2013, High-throughput sequence analysis reveals structural diversity and improved potency among RNA inhibitors of HIV reverse transcriptase, Nucleic Acids Res., 41, 1873, 10.1093/nar/gks1190
Hoon, 2011, Aptamer selection by high-throughput sequencing and informatic analysis, BioTechniques, 51, 413, 10.2144/000113786
Montanaro, 2004, Initiation of mRNA translation in oncogenesis: the role of eIF4E, Cell Cycle, 3, 1387, 10.4161/cc.3.11.1251
Graff, 2003, Translational control and metastatic progression: enhanced activity of the mRNA cap-binding protein eIF-4E selectively enhances translation of metastasis-related mRNAs, Clin Exp Metastasis, 20, 265, 10.1023/A:1022943419011
Blagden, 2011, The biological and therapeutic relevance of mRNA translation in cancer, Nat Rev Clin Oncol, 8, 280, 10.1038/nrclinonc.2011.16
Mochizuki, 2005, High affinity RNA for mammalian initiation factor 4E interferes with mRNA-cap binding and inhibits translation, RNA, 11, 77, 10.1261/rna.7108205
Zuker, 2003, Mfold web server for nucleic acid folding and hybridization prediction, Nucleic Acids Res., 31, 3406, 10.1093/nar/gkg595
Soni, 2008, eIF4E knockdown decreases breast cancer cell growth without activating Akt signaling, Mol Cancer Ther, 7, 1782, 10.1158/1535-7163.MCT-07-2357
Di Giusto, 2004, Construction, stability, and activity of multivalent circular anticoagulant aptamers, J Biol Chem., 279, 46483, 10.1074/jbc.M408037200
Mahlknecht, 2013, Aptamer to ErbB-2/HER2 enhances degradation of the target and inhibits tumorigenic growth, Proc Natl Acad Sci USA., 110, 8170, 10.1073/pnas.1302594110
Latham, 1994, The application of a modified nucleotide in aptamer selection: novel thrombin aptamers containing 5-(1-pentynyl)-2’-deoxyuridine, Nucleic Acids Res., 22, 2817, 10.1093/nar/22.14.2817
Kimoto, 2013, Generation of high-affinity DNA aptamers using an expanded genetic alphabet, Nat Biotechnol, 31, 453, 10.1038/nbt.2556
Schwarzer, 2014, Hyperactivation of mTORC1 and mTORC2 by multiple oncogenic events causes addiction to eIF4E-dependent mRNA translation in T-cell leukemia, Oncogene (epub ahead of print)
Seow, 2012, Artificial mirtron-mediated gene knockdown: functional DMPK silencing in mammalian cells, RNA, 18, 1328, 10.1261/rna.030601.111