ILDMSF: Inferring Associations Between Long Non-Coding RNA and Disease Based on Multi-Similarity Fusion

Qingfeng Chen, Dehuan Lai, Wei Lan, WU Xi-min, Yi‐Ping Phoebe Chen, Jin Liu, Jianxin Wang

Tóm tắt

Từ khóa


Tài liệu tham khảo

10.1016/j.neucom.2016.03.080

10.1109/TCBB.2016.2635144

10.1089/cmb.2010.0213

10.1186/1479-5876-12-99

10.1109/TST.2015.7297749

kibbe, 2014, Disease ontology 2015 update: An expanded and updated database of human diseases for linking biomedical knowledge through disease data, Nucleic Acids Res, 43, 1071, 10.1093/nar/gku1011

10.3390/molecules23102439

10.1038/nmeth.2810

10.1093/bioinformatics/btu684

10.1371/journal.pone.0066952

chen, 2012, LncRNADisease: A database for long-non-coding RNA-associated diseases, Nucleic Acids Res, 41, 983, 10.1093/nar/gks1099

10.1093/bioinformatics/btw639

prasad, 2008, Human protein reference database2009 update, Nucleic Acids Res, 37, 767

10.1101/gad.276931.115

10.1002/bmb.20952

wang, 2019, Weighted matrix factorization on multi-relational data for lncRNA-disease association prediction, Methods

10.1039/C3MB70608G

10.2174/1567205013666160622112234

10.1093/bioinformatics/btt426

10.18632/oncotarget.8296

10.1109/TNB.2015.2391133

10.1093/bioinformatics/bty327

10.1016/j.bbrc.2016.08.030

zhang, 2016, GAS5 modulated autophagy is a mechanism modulating cisplatin sensitivity in NSCLC cells, Eur Rev Med Pharmacological Sci, 20, 2271

10.1007/978-1-4939-7717-8_12

10.1111/1759-7714.12599

zhang, 2017, Prognostic implication and functional role of long noncoding RNA IGF2AS in human non-small cell lung cancer, J Cellular Biochemistry, 120, 12067

10.1186/s12885-016-2569-6

10.18632/oncotarget.21465

tantai, 2015, Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer, Int J Clin Exp Pathol, 8, 7887

10.1007/s13277-015-3453-8

network, 2008, Comprehensive genomic characterization defines human glioblastoma genes and core pathways, Nature, 455, 1061, 10.1038/nature07385

barrett, 2012, NCBI GEO: Archive for functional genomics data sets—update, Nucleic Acids Res, 41, 991, 10.1093/nar/gks1193

10.1145/1961189.1961199

10.1038/459927a

10.1126/science.1105136

miao, 2017, lncRNASNP2: An updated database of functional SNPs and mutations in human and mouse lncRNAs, Nucleic Acids Res, 46, 276, 10.1093/nar/gkx1004

10.1186/1471-2164-16-S3-S2

jiang, 2014, LncRNA2Target: A database for differentially expressed genes after lncRNA knockdown or overexpression, Nucleic Acids Res, 43, 193, 10.1093/nar/gku1173

li, 2013, Starbase v2. 0: Decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale clip-seq data, Nucleic Acids Res, 42, 92, 10.1093/nar/gkt1248

10.1093/bioinformatics/btx794

10.1093/bioinformatics/bty002

10.1016/j.molmed.2014.09.002

10.1016/j.ygeno.2008.11.009

10.1155/2015/164635

10.1016/j.cell.2013.02.012

xie, 2013, NONCODEv4: Exploring the world of long non-coding RNA genes, Nucleic Acids Res, 42, 98, 10.1093/nar/gkt1222

10.1109/TCBB.2016.2645202

10.1016/j.canlet.2015.11.024

10.1093/bioinformatics/btu325

10.1158/1535-7163.MCT-15-0707

lu, 2016, Long noncoding RNA ANRIL could be transactivated by c-Myc and promote tumor progression of non-small-cell lung cancer, Onco Targets and Therapy, 9, 3077

10.1080/15384101.2018.1467675

10.1007/s13277-016-4787-6

cui, 2015, c-Myc-activated long non-coding RNA H19 downregulates miR-107 and promotes cell cycle progression of non-small cell lung cancer, Int J Clin Exp Pathol, 8, 12 400

10.1056/NEJMoa1616288

10.1186/s12935-015-0183-3

10.1007/s13277-015-4151-2