Hydrology is reflected in the functioning and community composition of methanotrophs in the littoral wetland of a boreal lake
Tóm tắt
Từ khóa
Tài liệu tham khảo
Abell, 2009, Grazing affects methanotroph activity and diversity in an alpine meadow soil, Environ Microbiol Rep, 1, 457, 10.1111/j.1758-2229.2009.00078.x
Amstrong, 1967, The use of polarography in the assay of oxygen diffusing from roots in anaerobic media, Physiol Plantarum, 20, 540, 10.1111/j.1399-3054.1967.tb07195.x
Auman, 2000, Molecular characterization of methanotrophic isolates from freshwater lake sediment, Appl Environ Microb, 66, 5259, 10.1128/AEM.66.12.5259-5266.2000
Bastviken, 2008, Fates of methane from different lake habitats, connecting whole-lake budgets and CH4 emissions, 113, G02024
Bender, 1992, Kinetics of CH4 oxidation in oxic soils exposed to ambient air or high CH4 mixing ratios, FEMS Microbiol Ecol, 101, 261, 10.1111/j.1574-6968.1992.tb05783.x
Bergström, 2007, Methane efflux from littoral vegetation stands of southern boreal lakes, an upscaled regional estimate, 41, 339
Bodelier, 2004, Nitrogen as a regulatory factor of methane oxidation in soils and sediments, FEMS Microbiol Ecol, 47, 265, 10.1016/S0168-6496(03)00304-0
Bodelier, 2000, Stimulation by ammonium-based fertilizers of methane oxidation in soil around rice roots, Nature, 403, 421, 10.1038/35000193
Bodrossy, 2003, Development and validation of a diagnostic microbial microarray for methanotrophs, Environ Microbiol, 5, 566, 10.1046/j.1462-2920.2003.00450.x
Bodrossy, 2006, mRNA-based parallel detection of active methanotroph populations by use of a diagnostic microarray, Appl Environ Microb, 72, 1672, 10.1128/AEM.72.2.1672-1676.2006
Boetius, 2000, A marine microbial consortium apparently mediating anaerobic oxidation of methane, Nature, 407, 623, 10.1038/35036572
Boon, 1996, Microbial consortia in wetland sediments - a biomarker analysis of the effects of hydrological regime, vegetation and season on benthic microbes, Mar Freshwater Res, 47, 27, 10.1071/MF9960027
Bubier, 1995, The relationship of vegetation to methane emission and hydrochemical gradients in northern peatlands, J Ecol, 83, 403, 10.2307/2261594
Bubier, 1993, Methane emissions from wetlands in the midboreal region of northern Ontario, Canada, Ecology, 74, 2240, 10.2307/1939577
Christensen, 2003, Factors controlling large scale variations in methane emissions from wetlands, Geophys Res Lett, 30, 1414, 10.1029/2002GL016848
Costello, 1999, Molecular characterization of functional and phylogenetic genes from natural populations of methanotrophs in lake sediments, Appl Environ Microb, 65, 5066, 10.1128/AEM.65.11.5066-5074.1999
Dedysh, 2005, Methylocella species are facultatively methanotrophic, Environ Microbiol, 187, 4665
Degelmann, 2010, Different atmospheric methane-oxidizing communities in European beech and Norway spruce soils, Appl Environ Microb, 76, 3228, 10.1128/AEM.02730-09
Deines, 2007, Methane-derived carbon flows through methane-oxidizing to higher trophic levels in aquatic systems, Environ Microbiol, 9, 1126, 10.1111/j.1462-2920.2006.01235.x
Drebs, 2002, Climatological Statistics of Finland 1971-2000, No. 2002:1
Dunfield, 2007, Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia, Nature, 450, 879, 10.1038/nature06411
Eller, 2005, Methane cycling in lake sediments and its influence on chironomid larval δ13C, FEMS Microbiol Ecol, 54, 339, 10.1016/j.femsec.2005.04.006
Ettwig, 2010, Nitrite-driven anaerobic methane oxidation by oxygenic bacteria, Nature, 464, 543, 10.1038/nature08883
Fawcett, 1960, A rapid and precise method for the determination of urea, J Clin Pathol, 13, 156, 10.1136/jcp.13.2.156
Fierer, 2006, The diversity and biogeography of soil bacterial communities, P Natl Acad Sci USA, 103, 626, 10.1073/pnas.0507535103
Good, 1953, The population frequencies of species and the estimation of population parameters, Biometrika, 40, 237, 10.1093/biomet/40.3-4.237
Henckel, 2000, Effects of O2 and CH4 on presence and activity of the indigenous methanotrophic community in rice field soil, Environ Microbiol, 2, 666, 10.1046/j.1462-2920.2000.00149.x
Hinrichs, 1999, Methane-consuming archaebacteria in marine sediments, Nature, 398, 802, 10.1038/19751
Holmes, 1995, Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related, FEMS Microbiol Lett, 132, 203, 10.1111/j.1574-6968.1995.tb07834.x
Hu, 2009, Enrichment of denitrifying anaerobic methane oxidizing microorganisms, Environ Microbiol Rep, 1, 377, 10.1111/j.1758-2229.2009.00083.x
Huttunen, 2003, Methane emissions from natural peatlands in the northern boreal zone in Finland, Fennoscandia, Atmos Environ, 37, 147, 10.1016/S1352-2310(02)00771-9
Islam, 2008, Methane oxidation at 55 degrees C and pH 2 by a thermoacidophilic bacterium belonging to the Verrucomicrobia phylum, P Natl Acad Sci USA, 105, 300, 10.1073/pnas.0704162105
Joabsson, 1999, Vascular plants controls on methane emissions from northern peatforming wetlands, Tree, 14, 385
Juutinen, 2003a, Major implication of the littoral zone for methane release from boreal lakes, Global Biogeochem Cy, 17, 1117, 10.1029/2003GB002105
Juutinen, 2003b, Methane (CH4) release from littoral wetlands of boreal lakes during an extended flooding period, Glob Change Biol, 9, 413, 10.1046/j.1365-2486.2003.00595.x
Kankaala, 2003, Midsummer spatial variation in methane efflux from stands of littoral vegetation in a boreal meso-eutrophic lake, Freshwater Biol, 48, 1617, 10.1046/j.1365-2427.2003.01113.x
Kettunen, 1999, Methane production and oxidation potentials in relation to water table fluctuations in two boreal mires, Soil Biol Biochem, 31, 1741, 10.1016/S0038-0717(99)00093-0
King, 1994, Associations of methanotrophs with the roots and rhizomes of aquatic vegetation, Appl Environ Microb, 60, 3220, 10.1128/AEM.60.9.3220-3227.1994
Kolb, 2003, Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assay, Appl Environ Microb, 69, 2423, 10.1128/AEM.69.5.2423-2429.2003
Kowalchuk, 2002, Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms, Antonie van Leeuwenhoek, 81, 509, 10.1023/A:1020565523615
Krause, 2009, Spatial heterogeneity of methanotrophs, a geostatistical analysis of pmoA-based T-RFLP patterns in a paddy soil, 1, 393
Kumaresan, 2009, Spatial and temporal diversity of methanotrophs in a landfill cover soil are differentially related to soil abiotic factors, Environ Microbiol Rep, 1, 398, 10.1111/j.1758-2229.2009.00059.x
Lidstrom, 1984, Seasonal study of methane oxidation in Lake Washington, Appl Environ Microb, 47, 1255, 10.1128/AEM.47.6.1255-1260.1984
Lin, 2005, Analysis of methane monooxygenase genes in Mono Lake suggests that increased methane oxidation activity may correlate with a change in methanotroph community structure, Appl Environ Microb, 71, 6458, 10.1128/AEM.71.10.6458-6462.2005
Lindahl, 1993, Instability and decay of the primary structure of DNA, Nature, 362, 709, 10.1038/362709a0
Loranger-Merciris, 2006, Rapid effects of plant species diversity and identity on soil microbial communities in experimental grassland ecosystems, Soil Biol Biochem, 38, 2336, 10.1016/j.soilbio.2006.02.009
Ludwig, 2004, ARB, a software environment for sequence data, 32, 1363
McDonald, 2008, Molecular ecology techniques for the study of aerobic methanotrophs, Appl Environ Microb, 74, 1305, 10.1128/AEM.02233-07
Mohanty, 2006, Differential effects of nitrogenous fertilizers on methane-consuming microbes in rice field and forest soils, Appl Environ Microb, 72, 1346, 10.1128/AEM.72.2.1346-1354.2006
Mosaavi, 1997, Controls on CH4 and CO2 emissions along two moisture gradients in the Canadian Boreal zone, J Geophys Res, 102, 261
Murase, 2008, Selective grazing of methanotrophs by protozoa in a rice field soil, FEMS Microbiol Ecol, 65, 408, 10.1111/j.1574-6941.2008.00511.x
Murase, 2006, Impact of protists on the activity and structure of the bacterial community in a rice field soil, Appl Environ Microb, 72, 5436, 10.1128/AEM.00207-06
Noll, 2008, Selective stimulation of type I methanotrophs in a rice paddy soil by urea fertilization revealed by RNA-based stable isotope probing, FEMS Microbiol Ecol, 65, 125, 10.1111/j.1574-6941.2008.00497.x
Nykänen, 1995, Emissions of CH4, N2O and CO2 from a virgil fen and a fen drained for grassland in Finland, J Biogeogr, 22, 351, 10.2307/2845930
Oksanen J Kindt R Legendre P O'hara B Simpson GL Stevens MHH 2008 http://vegan.r-forge.r-project.org
Oremland, 1992, Importance of methane-oxidizing bacteria in the methane budget as revealed by the use of specific inhibitor, Nature, 356, 421, 10.1038/356421a0
Pester, 2004, pmoA-based analysis of methanotrophs in a littoral lake sediment reveals a diverse and stable community in a dynamic environment, Appl Environ Microb, 70, 3138, 10.1128/AEM.70.5.3138-3142.2004
Raghoebarsing, 2006, A microbial consortium couples anaerobic methane oxidation to nitrification, Nature, 440, 918, 10.1038/nature04617
Rahalkar, 2009, Abundance and activity of methanotrophic bacteria in littoral and profundal sediments of Lake Constance (Germany), Appl Environ Microb, 73, 4389, 10.1128/AEM.02602-06
R Development Core Team 2009 http://www.R-project.org
Ribeiro, 2001, geoR, a package for geostatistical analysis, 1, 8
Rothfuss, 1997, Survival and activity of bacteria in a deep, aged lake sediment (Lake Constance), Microb Ecol, 7, 158
Saari, 2004, Methane oxidation in boreal forest soils, kinetics and sensitivity to pH and ammonium, 36, 1037
Schloss, 2005, Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness, Appl Environ Microb, 71, 1501, 10.1128/AEM.71.3.1501-1506.2005
Solomon, 2007, Climate Change 2007: The Physical Science Basis. Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, 21
Steenbergh, 2010, Biphasic kinetics of a methanotrophic community is a combination of growth and increased activity per cell, FEMS Microbiol Ecol, 71, 12, 10.1111/j.1574-6941.2009.00782.x
Steudler, 1989, Influence of nitrogen fertilization on methane uptake in temperate forest soils, Nature, 341, 314, 10.1038/341314a0
Stralis-Pavese, 2004, Optimization of diagnostic microarray for application in analysing landfill methanotroph communities under different plant covers, Environ Microbiol, 6, 347, 10.1111/j.1462-2920.2004.00582.x
Trotsenko, 2008, Advances in Applied Microbiology, 183
Watson, 1997, Oxidation of methane in peat, kinetics of CH4 and O2 removal and the role of plant roots, 29, 1257
Whalen, 1996, Moisture and temperature sensitivity of CH4 oxidation in boreal soils, Soil Biol Biochem, 28, 1271, 10.1016/S0038-0717(96)00139-3