Hydrogen exchange and structural dynamics of proteins and nucleic acids
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Wüthrich, 1980, Protein Folding, 549
Woodward, 1971, The correlation of ribo-nuclease exchange kinetics with the temperature induced transition, J. biol. Chem., 246, 4105, 10.1016/S0021-9258(18)62060-5
Woodward, 1975, The solvent dependence of hydrogen exchange kinetics of folded proteins, J. biol. Chem., 250, 440, 10.1016/S0021-9258(19)41918-2
Woodward, 1975, Solvent accessibility in folded proteins: studies of hydrogen exchange in trypsin, J. biol. Chem., 250, 432, 10.1016/S0021-9258(19)41917-0
Willumsen, 1971, Hydrogen isotope exchange in the study of protein conformation, C. r. Trav. Lab. Carlsberg, 38, 223
Wemmer, 1983, The structure of apamin in solution: 2D NMR study, Biochemistry, 22, 1901, 10.1021/bi00277a025
Wagner, 1982, Internal mobility in globular proteins, Comments Molec. Cell. Biophysics, 1, 261
Schoenborn, 1978, Real space refinement of neutron diffraction data from carbon monoxide sperm whale myoglobin, Acta. crystallogr., 34, 65
Sarma, 1981, Biomolecular Stereodynamics
Rosenberg, 1968, Studies of hydrogen exchange in proteins, i. The exchange kinetics of bovine carbonic anhydrase, J. biol. Chem., 243, 5193, 10.1016/S0021-9258(18)92009-0
Roder, 1983, Exchange kinetics of individual amide protons in thermally unfolded BPTI, Biochim. biophys. Acta
Schellman, 1955, The stability of hydrogen bonded peptide structures in aqueous solution, C. r. Lab. Carlsberg (Ser. Chim.), 29, 230
Roder H. , Wagner G. & Wüthrich K. (1983 a). Kinetics and cooper-ativity of the solvent exchange of individual amide protons in BPTI. Biochim. biophys. Acta (in the Press).
Preisler, 1981, Biomolecular Stereodynamics, 405
Phillips, 1981, Crystallographic studies of movement within proteins, Biochem. Soc. Symp., 46, 1
Roder H. (1981). Mobilitat in Proteinen unter nativen und denaturierden Bedingungen: Untersuchung von Trypsin Inhibitoren mit spectro-skopischen Methoden. Diss. ETH No. 6932.
Tanford, 1968, Protein denaturation, Adv. Protein Chem., 23, 122
Richards, 1959, The preparation of subtilisin-modified ribonuclease and the separation of the peptide and protein components, J. biol. Chem., 234, 1459, 10.1016/S0021-9258(18)70031-8
Rosenberg, 1969, Studies of hydrogen exchange in proteins. II. The reversible thermal unfolding of chymotrypsinogen A as studied by exchange kinetics, J. biol. Chem., 244, 6153, 10.1016/S0021-9258(18)63519-7
Hvidt, 1972, Conformational changes in human serum albumin as revealed by hydrogen deuterium exchange studies, J. biol. Chem., 247, 1530, 10.1016/S0021-9258(19)45590-7
Connolly M. L. (1981). Molecular surfaces and interior cavities of proteins. Ph.D. Dissertation UCSF.
Carter, 1978, Pressure effects on folded proteins in solution, J. biol. Chem., 253, 1947, 10.1016/S0021-9258(19)62340-9
Baldwin, 1980, Protein Folding, 217
Englander, 1973, Structural and free energy changes in hemoglobin by use of a difference method, J. biol. Chem., 248, 4852, 10.1016/S0021-9258(19)43744-7
Wüthrich K. , Wagner G. & Richarz R. (1978). A dynamic model for globular protein conformations based on high resolution NMR data. In Protein: Structure, Function and Industrial Applications, Proceedings of the I2th FEES Meeting, Dresden 1978 (ed. E. Hofmann, W. Pfeil and H. Aurich).
Englander, 1982, Reexamination of rhodopsin structure by hydrogen exchange, J. biol. Chem., 257, 7982, 10.1016/S0021-9258(18)34285-6
Rialdi, 1975, Thermodynamics and Thermochemistry of Biologically Important Systems, 148
Englander, 1972, Hydrogen exchange detection of discrete ligand-induced changes in hemoglobin, J. biol. Chem., 247, 2387, 10.1016/S0021-9258(19)45441-0
DeMarco, 1980, Solvent effects and approaches for the fine structure analysis of peptidyl amide 1H NMR spectra, J. magn. Reson., 39, 253
Williams, 1975, Binding kinetics of mercury (II) to polynucleotides, J. molec. Biol., 14, 1944
Llinas, 1973, The solution conformation of the ferrichromes, J. biol. Chem., 248, 915, 10.1016/S0021-9258(19)44353-6
Llinas, 1973, The solution conformation of the ferrichromes, J. biol. Chem., 248, 924, 10.1016/S0021-9258(19)44354-8
Schinkle J. (1983). Protein hydration dependence of the amide hydrogen exchange of lysozyme. Ph.D. Dissertation, University of Arizona, Tucson.
Linderstrøm-Lang, 1958, Symposium on Protein Structure
Moelwyn-Hughes, 1961, Physical Chemistry, 27
McLendon, 1978, Is protein turnover thermodyn-amically controlled?, J. biol. Chem., 253, 6335, 10.1016/S0021-9258(19)46935-4
Lumry, 1978, Dynamic Properties of Polyion Systems
Bates, 1964, Determination of pH: Theory and Practice
Levitt M. (1983). Molecular dynamics of native protein. J. molec. Biol. (in the Press).
Wyckoff, 1970, The 3-dimensional structuring of ribo-nuclease S. Interpretation of an electron density map at nominal resolution of 2 Å, J. biol. Chem., 245, 305, 10.1016/S0021-9258(18)63395-2
Woodward, 1971, Urea effects on hydrogen exchange kinetics leading to a general model for hydrogen exchange from folded proteins, J. biol. Chem., 246, 4114, 10.1016/S0021-9258(18)62061-7
Hvidt, 1964, Discussion of the pH dependence of the H-D exchange of proteins, C. r. Trav. Lab. Carlsberg, 34, 299
Glasstone, 1941, The Theory of Rate Processes
Lenormant, 1953, Origin of the absorption band at 1550 cm−1 in proteins, Nature, 172, 720
Ikegami, 1974, Isotope exchange and Conformational fluctuation in polypeptides, Adv. Biophys, 6, 1
Malin, 1980, The slowest allosterically responsive hydrogens in hemoglobin: completion of the hydrogen exchange survey, J. biol. Chem., 255, 10695, 10.1016/S0021-9258(19)70363-9
Kallenbach N. R. & Kim P. S. (1984). Effects of bases on fluctuations at the heme pocket of cyanometmyoglobin. Proc. natn. Acad. Sci. U.S.A. (in the Press).
Englander, 1983, Structure and Dynamics of Nucleic Acids and Proteins, 421
Klotz, 1960, Non-covalent bonds in protein structure, Brookhaven Symp. Biol., 13, 25
Lumry, 1975, The mobile defect hypothesis of protein function, Col. Int. C.N.R.S. L'Eau Syst. Biol., 246, 55
Levy, 1981, Carbon-13 spin lattice relaxation, linewidth and nuclear overhauser enhancement measurements of nucleosome length DNA, J. biol. Chem., 256, 9986, 10.1016/S0021-9258(19)68727-2
Linderstrøm-Lang, 1955, Deuterium exchange between peptides and water, Symposium on Peptide Chemistry. Chem. Soc. Spec. Publ., 2, 1
Linderstrøm-Lang, 1959, The Enzymes, 1
Mason, 1983, Neutrons in Biology: Neutron Scattering Analysis for Biological structures
Tsuboi, 1979, Overall and localized fluctuation in the structure of a protein molecule, Adv. Biophys., 12, 101
Matthew J. B. & Richards F. M. (1983). The pH dependence of hydrogen exchange in proteins. J. biol. Chem. (in the Press).