Human evolutionary history of Eastern Africa

Current Opinion in Genetics & Development - Tập 53 - Trang 134-139 - 2018
Ludovica Molinaro1, Luca Pagani1,2
1Estonian Biocentre, Institute of Genomics, University of Tartu, Estonia
2APE Lab, Department of Biology, University of Padova, Italy

Tài liệu tham khảo

White, 2003, Pleistocene Homo sapiens from Middle Awash, Ethiopia, Nature, 423, 742, 10.1038/nature01669 Clark, 2003, Stratigraphic, chronological and behavioural contexts of Pleistocene Homo sapiens from Middle Awash, Ethiopia, Nature, 423, 747, 10.1038/nature01670 Hublin, 2017, New fossils from Jebel Irhoud, Morocco and the pan-African origin of Homo sapiens, Nature, 546, 289, 10.1038/nature22336 Berger, 2015, Homo naledi, a new species of the genus Homo from the Dinaledi Chamber, South Africa, eLife, 4, e09560, 10.7554/eLife.09560 Stringer, 2017, Palaeoanthropology: on the origin of our species, Nature, 546, 212, 10.1038/546212a Pagani, 2015, Tracing the route of modern humans out of Africa by using 225 human genome sequences from Ethiopians and Egyptians, Am J Hum Genet, 96, 986, 10.1016/j.ajhg.2015.04.019 Schlebusch, 2017, Southern African ancient genomes estimate modern human divergence to 350.000 to 260.000 ya, Science (80-), 6266 Skoglund, 2017, Reconstructing prehistoric African population structure, Cell, 171, 59, 10.1016/j.cell.2017.08.049 Schlebusch, 2012, Genomic variation in seven Khoe-San groups reveals adaptation and complex African history, Science (80-), 338, 374, 10.1126/science.1227721 Stringer, 2002, Modern human origins: progress and prospects, Philos Trans R Soc Lond Ser B Biol Sci, 357, 563, 10.1098/rstb.2001.1057 Henn, 2011, Hunter-gatherer genomic diversity suggests a southern African origin for modern humans, Proc Natl Acad Sci U S A, 108, 5154, 10.1073/pnas.1017511108 Montinaro, 2018, The evolutionary history of Southern Africa, Curr Opin Genet Dev, 58 Soares, 2012, The expansion of mtDNA Haplogroup L3 within and out of Africa, Mol Biol Evol, 29, 915, 10.1093/molbev/msr245 Stringer, 1989, ESR dates for the hominid burial site of Es Skhul in Israel, Nature, 338, 756, 10.1038/338756a0 Valladas, 1988, Thermoluminescence dating of Mousterian Troto-Cro-Magnon’ remains from Israel and the origin of modern man, Nature, 331, 614, 10.1038/331614a0 Grün, 2005, U-series and ESR analyses of bones and teeth relating to the human burials from Skhul, J Hum Evol, 49, 316, 10.1016/j.jhevol.2005.04.006 Hershkovitz, 2018, The earliest modern humans outside Africa, Science, 459, 456, 10.1126/science.aap8369 Groucutt, 2018, Homo sapiens in Arabia by 85,000 years ago, Nat Ecol Evol, 2, 800, 10.1038/s41559-018-0518-2 Breeze, 2016, Palaeohydrological corridors for hominin dispersals in the Middle East ∼250–70,000 years ago, Quat Sci Rev, 144, 155, 10.1016/j.quascirev.2016.05.012 Meyer, 2012, A high-coverage genome sequence from an archaic denisovan individual, Science (80-), 338, 222, 10.1126/science.1224344 Prugnolle, 2005, Geography predicts neutral genetic diversity of human populations, Curr Biol, 15, R159, 10.1016/j.cub.2005.02.038 Green, 2010, A draft sequence of the Neandertal genome, Science (80-), 328, 710, 10.1126/science.1188021 Mellars, 2013, Genetic and archaeological perspectives on the initial modern human colonization of southern Asia, Proc Natl Acad Sci U S A, 110, 10699, 10.1073/pnas.1306043110 Mallick, 2016, The simons genome diversity project: 300 genomes from 142 diverse populations A, Nature, 344, 1173 Malaspinas, 2016, A genomic history of Aboriginal Australia, Nature, 538, 207, 10.1038/nature18299 Pagani, 2016, Genomic analyses inform on migration events during the peopling of Eurasia, Nature, 538, 238, 10.1038/nature19792 Torroni, 2006, Harvesting the fruit of the human mtDNA tree, Trends Genet, 22, 339, 10.1016/j.tig.2006.04.001 Kivisild, 2004, Ethiopian mitochondrial DNA heritage: tracking gene flow across and around the gate of tears, Am J Hum Genet, 75, 752, 10.1086/425161 Behar, 2008, Counting the founders: the matrilineal genetic ancestry of the Jewish Diaspora, PLoS One, 3, e2062, 10.1371/journal.pone.0002062 Derricourt, 2005, Getting “out of Africa”: sea crossings, land crossings and culture in the hominin migrations, J World Prehist, 19, 10.1007/s10963-006-9002-z Krause, 2007, Neanderthals in central Asia and Siberia, Nature, 449, 902, 10.1038/nature06193 Fu, 2014, Genome sequence of a 45,000-year-old modern human from western Siberia, Nature, 514, 445, 10.1038/nature13810 Kivisild, 2006, The role of selection in the evolution of human mitochondrial genomes, Genetics, 172, 373, 10.1534/genetics.105.043901 Cruciani, 2007, Tracing past human male movements in Northern/Eastern Africa and Western Eurasia: new clues from Y-chromosomal haplogroups E-M78 and J-M12, Mol Biol Evol, 24, 1300, 10.1093/molbev/msm049 Musilova, 2011, Population history of the Red Sea–genetic exchanges between the Arabian Peninsula and East Africa signaled in the mitochondrial DNA HV1 haplogroup, Am J Phys Anthropol, 145, 592, 10.1002/ajpa.21522 Pagani, 2012, Ethiopian genetic diversity reveals linguistic stratification and complex influences on the Ethiopian gene pool, Am J Hum Genet, 91, 83, 10.1016/j.ajhg.2012.05.015 Lazaridis, 2016, Genomic insights into the origin of farming in the ancient Near East, Nature, 536, 419, 10.1038/nature19310 Pickrell, 2014, Ancient west Eurasian ancestry in southern and eastern Africa, Proc Natl Acad Sci U S A, 111, 2632, 10.1073/pnas.1313787111 Hodgson, 2014, Early back-to-Africa migration into the Horn of Africa, PLoS Genet, 10, e1004393, 10.1371/journal.pgen.1004393 Gallego Llorente, 2015, Ancient Ethiopian genome reveals extensive Eurasian admixture in Eastern Africa, Science, 350, 6 Henn, 2012, Genomic ancestry of North Africans supports back-to-Africa migrations, PLoS Genet, 8, 10.1371/journal.pgen.1002397 van de Loosdrecht, 2018, Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations, Science (80-), 8380, 1 Henn, 2010, Fine-scale population structure and the era of next-generation sequencing, Hum Mol Genet, 19, R221, 10.1093/hmg/ddq403 Lachance, 2012, Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers, Cell, 150, 457, 10.1016/j.cell.2012.07.009 Gurdasani, 2015, The African Genome Variation Project shapes medical genetics in Africa, Nature, 517, 327, 10.1038/nature13997 Scozzari, 2014, An unbiased resource of novel SNP markers provides a new chronology for the human Y chromosome and reveals a deep phylogenetic structure in Africa, Genome Res, 24, 535, 10.1101/gr.160788.113 van Dorp, 2015, Evidence for a common origin of blacksmiths and cultivators in the Ethiopian Ari within the last 4500 years: lessons for clustering-based inference, PLoS Genet, 11, e1005397, 10.1371/journal.pgen.1005397 Hollfelder, 2017, Northeast African genomic variation shaped by the continuity of indigenous groups and Eurasian migrations, PLOS Genet, 13, e1006976, 10.1371/journal.pgen.1006976 Arauna, 2017, Recent historical migrations have shaped the gene pool of Arabs and Berbers in North Africa, Mol Biol Evol, 34, 318 D’Atanasio, 2018, The peopling of the last Green Sahara revealed by high-coverage resequencing of trans-Saharan patrilineages, Genome Biol, 19, 20, 10.1186/s13059-018-1393-5 Huerta-Sánchez, 2013, Genetic signatures reveal high-altitude adaptation in a set of Ethiopian populations, Mol Biol Evol, 30, 1877, 10.1093/molbev/mst089 Udpa, 2014, Whole genome sequencing of Ethiopian highlanders reveals conserved hypoxia tolerance genes, Genome Biol, 15, R36, 10.1186/gb-2014-15-2-r36 Alkorta-Aranburu, 2012, The genetic architecture of adaptations to high altitude in ethiopia, PLoS Genet, 8, e1003110, 10.1371/journal.pgen.1003110 Tekola-Ayele, 2015, Novel genomic signals of recent selection in an Ethiopian population, Eur J Hum Genet, 23, 1085, 10.1038/ejhg.2014.233 Hoit, 2011, Elevated pulmonary artery pressure among Amhara highlanders in Ethiopia, Am J Hum Biol, 23, 10.1002/ajhb.21130 Cheong, 2017, Alternative hematological and vascular adaptive responses to high-altitude hypoxia in East African highlanders, Am J Physiol—Lung Cell Mol Physiol, 312, L172, 10.1152/ajplung.00451.2016 Xing, 2008, Adaptation and mal-adaptation to ambient hypoxia; Andean, Ethiopian and Himalayan Patterns, PLoS One, 3, e2342, 10.1371/journal.pone.0002342 Beall, 2002, An Ethiopian pattern of human adaptation to high-altitude hypoxia, Proc Natl Acad Sci, 99, 17215, 10.1073/pnas.252649199 Scheinfeldt, 2012, Genetic adaptation to high altitude in the Ethiopian highlands, Genome Biol, 13, 10.1186/gb-2012-13-1-r1 Simonson, 2015, Altitude adaptation: a glimpse through various lenses, High Alt Med Biol, 16, 125, 10.1089/ham.2015.0033 Eriksson, 2012, Effect of ancient population structure on the degree of polymorphism shared between modern human populations and ancient hominins, Proc Natl Acad Sci U S A, 109, 13956, 10.1073/pnas.1200567109 Eriksson, 2014, The doubly conditioned frequency spectrum does not distinguish between ancient population structure and hybridization, Mol Biol Evol, 31, 1618, 10.1093/molbev/msu103