How the flow and sediment pulse influencing the distribution and functional gene composition of bacterial communities? Case study of the lower Yellow River, China

Ecological Indicators - Tập 145 - Trang 109599 - 2022
Jie Song1,2, Yujun Yi1,2, Yanning Gao1,2, Yang Zhou1,2, Qi Liu1
1State Key Joint Laboratory of Environmental Simulation and Pollution Control, School of Environment, Beijing Normal University, Beijing, 100875, China
2Key Laboratory for Water and Sediment Science, Ministry of Education, School of Environment, Beijing Normal University, Beijing 100875, China

Tài liệu tham khảo

Ager, 2010, Anthropogenic disturbance affects the structure of bacterial communities, Environ. Microbiol., 12, 670, 10.1111/j.1462-2920.2009.02107.x Asmala, 2013, Bioavailability of riverine dissolved organic matter in three Baltic Sea estuaries and the effect of catchment land use, Biogeosciences, 10, 6969, 10.5194/bg-10-6969-2013 Bae, 2018, Response of microbial populations regulating nutrient biogeochemical cycles to oiling of coastal saltmarshes from the Deepwater Horizon oil spill, Environ. Pollut., 241, 136, 10.1016/j.envpol.2018.05.033 Banerjee, 2018, Keystone taxa as drivers of microbiome structure and functioning, Nat. Rev. Microbiol., 16, 567, 10.1038/s41579-018-0024-1 Borruso, 2017, Ecological diversity of sediment rhizobacteria associated with Phragmites australis along a drainage canal in the Yellow River watershed, J. Soils Sediments, 17, 253, 10.1007/s11368-016-1498-y Bowes, 2020, Nutrient and microbial water quality of the upper Ganga River, India: identification of pollution sources, Environ. Monit. Assess., 192, 533, 10.1007/s10661-020-08456-2 Bradford, 2008, Thermal adaptation of soil microbial respiration to elevated temperature, Ecol. Lett., 11, 1316, 10.1111/j.1461-0248.2008.01251.x Cai, 2019, Spatiotemporal distributions and environmental drivers of diversity and community structure of nosZ-type denitrifiers and anammox bacteria in sediments of the Bohai Sea and North Yellow Sea, China. J. Ocean. Limnol., 37, 1211, 10.1007/s00343-019-8200-3 Campbell, 2013, Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient, ISME J., 7, 210, 10.1038/ismej.2012.93 Chen, 2017, Spatiotemporal variation of bacterial and archaeal communities in sediments of a drinking reservoir, Beijing, China, Appl. Microbiol. Biotechnol., 101, 3379, 10.1007/s00253-016-8019-1 Chen, 2018, Bacterial communities in riparian sediments: a large-scale longitudinal distribution pattern and response to dam construction, Front. Microbiol., 9, 999, 10.3389/fmicb.2018.00999 Dinesh, 2012, Short-term effects of nutrient management regimes on biochemical and microbial properties in soils under rainfed ginger (Zingiber officinale Rosc.), Geoderma, 173–174, 192, 10.1016/j.geoderma.2011.12.025 Du, 2011, Seasonal and spatial diversity of microbial communities in marine sediments of the South China Sea, Antonie Van Leeuwenhoek, 100, 317, 10.1007/s10482-011-9587-9 Erős, 2019, The landscape ecology of rivers: from patch-based to spatial network analyses, Curr. Landscape Ecol. Rep., 4, 103, 10.1007/s40823-019-00044-6 Fang, H., Huang, L., Zhao, H., Cheng, W., Chen, Y., Fazeli, M., Shang, Q., 2020. Surface Micro-morphology and Adsorption Properties of Sediment Particles, in: Mechanics of Bio-Sediment Transport. Springer Berlin Heidelberg, Berlin, Heidelberg, pp. 1–79. 10.1007/978-3-662-61158-6_1. Gilbert, 2010, The taxonomic and functional diversity of microbes at a temperate coastal site: A ‘multi-omic’ study of seasonal and diel temporal variation, PLoS ONE, 5, e15545, 10.1371/journal.pone.0015545 Hou, 2021, Effect of water-sediment regulation operation on sediment grain size and nutrient content in the lower Yellow River, J. Cleaner Prod., 279, 10.1016/j.jclepro.2020.123533 Hu, 2021, Shift of DNRA bacterial community composition in sediment cores of the Pearl River Estuary and the impact of environmental factors, Ecotoxicology, 30, 1689, 10.1007/s10646-020-02321-1 Hu, 2014, Response of bacterial communities to environmental changes in a mesoscale subtropical watershed, Southeast China, Sci. Total Environ., 472, 746, 10.1016/j.scitotenv.2013.11.097 Jeffries, 2018, Metagenomic functional potential predicts degradation rates of a model organophosphorus xenobiotic in pesticide contaminated soils, Front. Microbiol., 9, 147, 10.3389/fmicb.2018.00147 Johansen, 2002, Contribution of cytophaga-like bacteria to the potential of turnover of carbon, nitrogen, and phosphorus by bacteria in the Rhizosphere of Barley (Hordeum vulgare L.), Microb. Ecol., 43, 298, 10.1007/s00248-002-2006-z Kraemer, 2019, A large-scale assessment of lake bacterial communities reveals pervasive impacts of human activities (preprint), Ecology Kuriqi, 2019, Influence of hydrologically based environmental flow methods on flow alteration and energy production in a run-of-river hydropower plant, J. Cleaner Prod., 232, 1028, 10.1016/j.jclepro.2019.05.358 Kuriqi, 2020, Water-energy-ecosystem nexus: Balancing competing interests at a run-of-river hydropower plant coupling a hydrologic–ecohydraulic approach, Energy Convers. Manage., 223, 10.1016/j.enconman.2020.113267 Lagomarsino, 2012, Soil organic carbon distribution drives microbial activity and functional diversity in particle and aggregate-size fractions, Pedobiologia, 55, 101, 10.1016/j.pedobi.2011.12.002 Langille, 2013, Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences, Nat. Biotechnol., 31, 814, 10.1038/nbt.2676 Liang, 2020, Functional distribution of bacterial community under different land use patterns based on FaProTax function prediction, Pol. J. Environ. Stud., 29, 1245, 10.15244/pjoes/108510 Liang, 2013, Adsorption of phosphorus in sediment re-suspension under sudden expansion flow conditions, J Hydrodyn, 25, 112, 10.1016/S1001-6058(13)60344-3 Liao, 2018, Integrating microbial biomass, composition and function to discern the level of anthropogenic activity in a river ecosystem, Environ. Int., 116, 147, 10.1016/j.envint.2018.04.003 Lin, 2014, Distributions and assemblages of microbial communities along a sediment core retrieved from a potential hydrate-bearing region offshore southwestern Taiwan, J. Asian Earth Sci., 92, 276, 10.1016/j.jseaes.2014.02.014 Lin, 2020, Evaluating ecosystem functioning following river restoration: the role of hydromorphology, bacteria, and macroinvertebrates, Science of The Total Environment, 743, 140583, 10.1016/j.scitotenv.2020.140583 Louca, 2017, High taxonomic variability despite stable functional structure across microbial communities, Nat. Ecol. Evol., 1, 0015, 10.1038/s41559-016-0015 Luo, 2020, Seasonal effects of river flow on microbial community coalescence and diversity in a riverine network, FEMS Microbiol. Ecol., 96, fiaa132, 10.1093/femsec/fiaa132 Lv, 2021, Different Responses of Bacterial and Archaeal Communities in River Sediments to Water Diversion and Seasonal Changes, Microorganisms, 9, 782, 10.3390/microorganisms9040782 Mahler, 2000, Transport of free and particulate-associated bacteria in karst, J. Hydrol., 238, 179, 10.1016/S0022-1694(00)00324-3 Meinersmann, 2008, Salmonella, Campylobacter and Enterococcus Spp.: their antimicrobial resistance profiles and their spatial relationships in a synoptic study of the Upper Oconee River Basin, Microb. Ecol., 55, 444, 10.1007/s00248-007-9290-6 Ogbonna, 2021, Characteristics of microorganisms associated with crude oil impacted surface water body in Bodo/Bonny River, Nigeria. JAMB, 64–79 Popović, P., Devauchelle, O., Abramian, A., Lajeunesse, E., 2021. Sediment load determines the shape of rivers. Proc. Natl. Acad. Sci. U.S.A. 118, e2111215118. 10.1073/pnas.2111215118. Song, 2020, Spatial and temporal variations in the plankton community because of water and sediment regulation in the lower reaches of Yellow River, J. Cleaner Prod., 261, 10.1016/j.jclepro.2020.120972 Stagnaro, 2014, Velocity and concentration profiles of saline and turbidity currents flowing in a straight channel under quasi-uniform conditions, Earth Surf. Dynam., 2, 167, 10.5194/esurf-2-167-2014 Staley, 2013, Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River, J. Appl. Microbiol., 115, 1147, 10.1111/jam.12323 Su, 2018, Sediment bacterial community structures and their predicted functions implied the impacts from natural processes and anthropogenic activities in coastal area, Mar. Pollut. Bull., 131, 481, 10.1016/j.marpolbul.2018.04.052 Tirta, A.P., Saefumillah, A., Foliatini, F., Herawati, H., 2020. The study of phosphate release from artificial sediment into water body using diffusive gradient in thin film (DGT) device in oxic condition. Indones. J. Chem. 20, 395. 10.22146/ijc.43482. Vishwakarma, 2022, Pre- and post-dam river water temperature alteration prediction using advanced machine learning models, Environ. Sci. Pollut. Res., 10.1007/s11356-022-21596-x Wang, 2018, How bacterioplankton community can go with cascade damming in the highly regulated Lancang-Mekong River Basin, Mol. Ecol., 27, 4444, 10.1111/mec.14870 Watkins, 2010, Dairy factory wastewaters, their use on land and possible environmental impacts – A mini review, TOASJ, 4, 1, 10.2174/1874331501004010001 Xia, 2012, The development of water allocation management in The Yellow River Basin, Water Resour. Manage., 26, 3395, 10.1007/s11269-012-0078-1 Xia, 2013, Bacterial diversity and community structure in the sediment of the middle and lower reaches of the Yellow River, the largest turbid river in the world, Aquat. Microb. Ecol., 71, 43, 10.3354/ame01664 Yi, 2021, Habitat and seasonal variations in bacterial community structure and diversity in sediments of a Shallow lake, Ecol. Indicators, 120, 10.1016/j.ecolind.2020.106959 Yu, 2022, Heavy metals and microbiome are negligible drivers than mobile genetic elements in determining particle-attached and free-living resistomes in the Yellow River, J. Hazard. Mater., 424, 10.1016/j.jhazmat.2021.127564 Yuan, 2022, Spatial and seasonal patterns of sediment bacterial communities in large river cascade reservoirs: drivers, assembly processes, and co-occurrence relationship, Microb. Ecol.