How spectroscopy and microspectroscopy of degraded wood contribute to understand fungal wood decay

Karin Fackler1, Manfred Schwanninger2
1Institute of Chemical Engineering, Vienna University of Technology, Vienna, Austria
2Department of Chemistry, BOKU - University of Natural Resources and Life Sciences, Vienna, Austria

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Åkerholm M, Hinterstoisser B, Salmén L (2004) Characterization of the crystalline structure of cellulose using static and dynamic FT-IR spectroscopy. Carbohydr Res 339:569–578

Atalla RH, Vanderhart DL (1984) Native cellulose: a composite of two distinct crystalline forms. Science 223:283–285

Backa S, Brolin A, Nilsson T (2001) Characterization of fungal degraded birch wood by FT-IR and Py-GC. Holzforschung 55:225–232

Bajpai P (2012) Biotechnology for pulp and paper processing. Springer, New York

Barsberg S (2010) Prediction of vibrational spectra of polysaccharides—simulated IR spectrum of cellulose based on density functional theory (DFT). J Phys Chem B 114:11703–11708

Barsberg S, Sanadi AR, Jorgensen H (2011) A new density functional theory (DFT) based method for supporting the assignment of vibrational signatures of mannan and cellulose—analysis of palm kernel cake hydrolysis by ATR-FT-IR spectroscopy as a case study. Carbohydr Polym 85:457–464

Bauch J, Seehann G, Fitzner H (1976) Microspectrophotometrical investigations on lignin of decayed wood. Mat Organ Beih 3:141–152

Binder M, Hibbett DS (2002) Higher-level phylogenetic relationships of homobasidiomycetes (mushroom-forming fungi) inferred from four rDNA regions. Mol Phylogenet Evol 22:76–90

Boonstra MJ, Pizzi A, Rigolet S (2006) Correlation of 13C-NMR analysis with fungal decay tests of polymeric structural wood constituents. I. Basidiomycetes. J Appl Polym Sci 101(4):2639–2649

Cowling EB (1961) Comparative biochemistry of the decay of sweetgum sapwood by white-rot and brown-rot fungi. USDA Technical Bulletin No. 1258

Daniel G (2003) Microview of wood under degradation by bacteria and fungi. In: Goodell B, Nicholas DD, Schultz TP (eds) Wood deterioration and degradation. Advances in Our Changing World, vol 845. ACS Symposium Series, pp 34–72

Davis MF, Schroeder HR, Maciel GE (1994a) Solid-state 13C nuclear magnetic resonance studies of wood decay. I. White rot decay of Colorado Blue Spruce. Holzforschung 48:99–105

Davis MF, Schroeder HR, Maciel GE (1994b) Solid-state 13C nuclear magnetic resonance studies of wood decay. II. White rot decay of Paper Birch. Holzforschung 48:186–192

Davis MF, Schroeder HR, Maciel GE (1994c) Solid-state 13C nuclear magnetic resonance studies of wood decay. III. Decay of Colorado Blue Spruce and Paper Birch by Postia placenta. Holzforschung 48:301–307

Eriksson K-EL, Blanchette RA, Ander P (1990) Microbial and enzymatic degradation of wood and wood components. Springer Series in Wood Science, Springer, Berlin

Fackler K, Schwanninger M (2010) Polysaccharide degradation and lignin modification during brown-rot of spruce wood: a polarised Fourier transform near infrared study. J Near Infrared Spectrosc 18:403–416

Fackler K, Schwanninger M (2011) Accessibility of hydroxyl groups of brown-rot degraded spruce wood to heavy water. J Near Infrared Spectrosc 19:359–368

Fackler K, Gradinger C, Hinterstoisser B, Messner K, Schwanninger M (2006) Lignin degradation by white rot fungi on spruce wood shavings during short-time solid-state fermentations monitored by near infrared spectroscopy. Enzyme Microb Technol 39:1476–1483

Fackler K, Schmutzer M, Manoch L, Schwanninger M, Hinterstoisser B, Ters T, Messner K, Gradinger C (2007a) Evaluation of the selectivity of white rot isolates using near infrared spectroscopic techniques. Enzyme Microb Technol 41:881–887

Fackler K, Schwanninger M, Gradinger C, Hinterstoisser B, Messner K (2007b) Qualitative and quantitative changes of beech wood degraded by wood rotting Basidiomycetes monitored by Fourier transform infrared spectroscopic methods and multivariate data analysis. FEMS Microbiol Lett 271:162–169

Fackler K, Schwanninger M, Gradinger C, Srebotnik E, Hinterstoisser B, Messner K (2007c) Fungal decay of spruce and beech wood assessed by near infrared spectroscopy in combination with uni- and multivariate data analysis. Holzforschung 62:223–230

Fackler K, Stevanic JS, Ters T, Hinterstoisser B, Schwanninger M, Salmén L (2010) Localisation and characterisation of incipient brown-rot decay within spruce wood cell walls using FT-IR imaging microscopy. Enzyme Microb Technol 47:257–267

Fackler K, Stevanic JS, Ters T, Hinterstoisser B, Schwanninger M, Salmén L (2011) FT-IR imaging microscopy to localise and characterise simultaneous and selective white-rot decay within spruce wood cells. Holzforschung 65:411–420

Faix O (1991) Classification of lignins from different botanical origins by FTIR spectroscopy. Holzforschung 45(Supplement):21–27

Faix O, Böttcher JH (1992) The influence of particle size and concentration in transmission and diffuse reflectance spectroscopy of wood. Holz als Roh- und Werkst 50:221–226

Faix O, Bremer O, Schmidt O, Stevanovic T (1991) Monitoring of chemical changes in white-rot degraded beech wood by pyrolysis-gas chromatography and Fourier transform infrared spectroscopy. J Anal Appl Pyrolysis 21:147–162

Fengel D, Wegener G (1989) Wood—chemistry, ultrastructure, reactions. De Gruyter, Berlin

Fergus BJ, Goring DAI (1970) Location of guaiacyl and syringyl lignins in birch xylem tissue. Holzforschung 24(4):113–117. doi: 10.1515/hfsg.1970.24.4.113

Ferraz A, Baeza J, Rodriguéz J, Freer J (2000) Estimating the chemical composition of biodegraded pine and eucalyptus wood by DRIFT spectroscopy and multivariate analysis. Biores Technol 74:201–212

Ferraz A, Parra C, Freer J, Baeza J, Rodriguéz J (2001) Characterization of white zones produced on Pinus radiata wood chips by Ganoderma australe and Ceriporiopsis subvermispora. World J Microbiol Biotechnol 16:641–645

Ferraz A, Mendonca R, Guerra A, Ruiz J, Rodriguéz J, Baeza J, Freer J (2004) Near-infrared spectra and chemical characteristics of Pinus taeda (Loblolly pine) wood chips biotreated by the white-rot fungus Ceriporiopsis subvermispora. J Wood Chem Technol 24(2):99–113

Floudas D, Binder M (2012) The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science 336:1715–1719

Gil AM, Pascoal Neto C (1999) Solid-state NMR studies of wood and other lignocellulosic material. Annu Rep NMR Spectrosc 37:75–117

Gilardi G, Abis L, Cass AEG (1994) Wide-line solid-state NMR of wood: proton relaxation time measurements on cell walls biodegraded by white-rot and brown-rot fungi. Enzyme Microb Technol 16(8):676–682

Gilardi G, Abis L, Cass AEG (1995) Carbon-13 CP/MAS solid state NMR and FT-IR spectroscopy of wood cell wall biodegradation. Enzyme Microb Technol 17:268–275

Goodell B (2003) Brown-rot fungal degradation of wood: our evolving view. In: Goodell B, Nicholas DD, Schultz TP (eds) Wood deterioration and degradation. Advances in Our Changing World, vol 845. ACS Symposium Series, pp 97–118

Green B, Jones PD, Nicholas DD, Schimleck LR, Shmulsky R (2011) Non-destructive assessment of Pinus spp wafers subjected to Gloeophyllum trabeum in soil block decay tests by diffuse reflectance near infrared spectroscopy. Wood Sci Technol 45:583–595

Griffiths PR (2009) Infrared and Raman instrumentation for mapping and imaging. In: Salzer R, Siesler HW (eds) Infrared and Raman Spectroscopic Imaging. Wiley-VCH, Weinheim, pp 3–64

Hartig R (1878) Die Zersetzungserscheinungen des Holzes der Nadelholzbäume und der Eiche in forstlicher botanischer und chemischer Richtung. Springer Verlag, Berlin

Hortling B, Forsskåhl I, Janson J, Sundquist J, Viikari L (1992) Investigations of fresh and biologically decayed birch. Holzforschung 46(1):9–19

Inagaki T, Siesler HW, Mitsui K, Tsuchikawa S (2010) Difference of the crystal structure of cellulose in wood after hydrothermal aging degradation: a NIR spectroscopy and XRD study. Biomacromolecules 11:2300–2305

Irbe I, Andersons B, Chirkova J, Kallavus U, Andersone I, Faix O (2006) On the changes of pinewood (Pinus sylvestris L.) Chemical composition and ultrastructure during the attack by brown-rot fungi Postia placenta and Coniophora puteana. Int Biodeterior Biodegrad 57(2):99–106

Irbe I, Andersone I, Andersons B, Noldt G, Dizhbite T, Kournosova N, Nuopponen M, Stewart D (2011) Characterisation of the initial degradation stage of scots pine (Pinus sylvestris L.) sapwood after attack by brown-rot fungus Coniophora puteana. Biodegradation 22:719–728

Jellison J, Kelley SS, Goodell B, Hui D, Ostrofsky A (2002) Differences in pH, electrical resistance, cation composition and NIR spectra of red spruce wood during early stages of brown rot degradation. The International Research Group on Wood Protection:IRG/WP 02-10449

Karklins VZ, Kreicberga SN, Ekabsone M (1975) Infrared spectroscopy of wood and its main components. VII. Use of IR-spectra to determine lignin in samples of birch wood destroyed by the fungus Fomitopsis pinicola. Khim Drevesny 2:53–57

Kataoka Y, Kondo T (1998) FT-IR microscopic analysis of changing cellulose crystalline structure during wood cell wall formation. Macromolecules 31:760–764

Kelley SS, Jellison J, Goodell B (2002) Use of NIR and pyrolysis-MBMS coupled with multivariate analysis for detecting the chemical changes associated with brown-rot biodegradation of spruce wood. FEMS Microbiol Lett 209:107–111

Kim YS, Newman RH (1995) Solid state 13C NMR study of wood degraded by the brown rot fungus Gloeophyllum trabeum. Holzforschung 49:109–114

Kirk TK (1975) Effects of a brown-rot fungus, Lenzites trabea, on lignin in spruce wood. Holzforschung 29:99–107

Kirk TK, Chang H (1975) Decomposition of lignin by white rot fungi. II Characterization of heavily degraded lignins from decayed spruce. Holzforschung 29(2):56–64

Kleist G, Schmitt U (2001) Characterisation of a soft rot-like decay pattern caused by Coniophora puteana (Schum.) Karst. in Sapelli wood (Entandrophragma cylindricum Sprague). Holzforschung 55(6):573–578

Koenig A, Sleighter RL, Salmon E, Hatcher PG (2010) NMR structural characterisation of Quercus alba (white oak) degraded by the brown rot fungus, Laetiporus sulphureus. J Wood Chem Technol 30:61–85

Körner S, Pecina H, Wienhaus O (1990) Investigations on the identification of the beginning brown-rot fungus infestation of wood by means of IR spectroscopy. Holz als Roh- und Werkst 48:413–416

Körner I, Faix O, Wienhaus O (1992) Attempt to determine brown-rot breakdown of Scots pine wood with the aid of FTIR spectroscopy. Holz als Roh- und Werkst 50:363–367

Larsson PT, Wickholm K, Iversen T (1997) (1997) A CP/MAS 13C NMR investigation of molecular ordering in celluloses. Carbohydr Res 302:19–25

Lehringer C, Koch G, Adusumalli R-B, Mook WM, Richter K, Militz H (2011) Effect of Physisporinus vitreus on wood properties of Norway spruce. Part 1: Aspects of delignification on surface hardness. Holzforschung 65:711–719

Levin L, Villalba L, Da Re V, Forchiassin F, Papinutti L (2007) Comparative studies of loblolly pine biodegradation and enzyme production by Argentinean white rot fungi focused on biopulping processes. Process Biochem 42:995–1002

Liang CY, Marchessault RH (1959a) Infrared spectra of crystalline polysaccharides. I. Hydrogen bonds in native celluloses. J Polym Sci 37:385–395

Liang CY, Marchessault RH (1959b) Infrared spectra of crystalline polysaccharides. II. Native celluloses in the region from 640 to 1,700 cm-1. J Polym Sci 39:269–278

Lu F, Ralph J (2003) Non-degradative dissolution and acetylation of ball-milled plant cell walls: high-resolution solution-state NMR. Plant J 35:535–544

Maréchal Y, Chanzy H (2000) The hydrogen bond network in Iβ cellulose as observed by infrared spectrometry. J Mol Struct 523:183–196

Martinez AT, González AE, Valmaseda M, Dale BE, Lambregts MJ, Haw JF (1991) Solid-state NMR studies of lignin and plant polysaccharide degradation by fungi. Holzforschung 45(Supplement):49–54

Maunu SL (2002) NMR studies of wood and wood products. Prog Nucl Magn Reson Spectrosc 40:151–174

Moore KM, Owen NL (2001) Infrared spectroscopic studies of solid wood. Appl Spectrosc Rev 36(1):65–86

Nicholas DD, Schultz TP (1987) Detection of incipient brown rot decay in wood by Fourier transform infrared spectrometry. The International Research Group on Wood Protection:IRG/WP/2275

Niduszynski I, Marchessault RH (1972) The crystalline structure of poly-b, D(1–4')mannose: Mannan I. Can J Chem 50:2130

O'Connor RT, DuPré EF, Mitcham D (1958) Applications of infrared absorption spectroscopy to investigations of cotton and modified cottons. Part I: physical and crystalline modifications and oxidation. Textile Res J 28:382–392

Okino EYA, Santana MAE, Resck IS, Alves MVS, Falcomer VAS, da Cunha JBM, dos Santos PHO (2008) Liquid chromatography and solid state CP/MAS 13C NMR techniques for chemical compound characterizations of cypress wood Cupressus glauca Lam. exposed to brown- and white-rot fungi. Carbohydr Polym 73(1):164–172

Pandey KK, Nagveni HC (2007) Rapid characterisation of brown rot and white rot degraded pine and rubberwood by FTIR spectroscopy. Holz als Roh- und Werkst 65:477–481

Pandey KK, Pitman AJ (2003) FTIR studies of the changes in wood chemistry following decay by brown-rot and white-rot fungi. Int Biodeterior Biodegrad 52:151–160

Pandey KK, Pitman AJ (2004) Examination of the lignin content in a softwood and a hardwood decayed by a brown-rot fungus with the acetyl bromide method and Fourier transform infrared spectroscopy. J Polym Sci A 42:2340–2346

Popescu C-M, Larsson PT, Tibirna C-M, Vasile C (2010a) Characterisation of fungal degraded lime wood by X-ray diffraction and cross-polarization magic-angle-spinning 13C-nuclear magnetic resonance spectroscopy. Appl Spectrosc 64(9):1054–1060

Popescu C-M, Popescu M-C, Vasile C (2010b) Structural changes in biodegraded lime wood. Carbohydr Polym 79:362–372

Richter U (1991) Strukturänderungen von Cellulose durch Alkalibehandlung: physikalische und chemische Beurteilungsmethoden. PhD, T. H. Darmstadt, Darmstadt

Richter U, Krause T, Schempp W (1991) Untersuchungen zur Alkalibehandlung von Cellulosefasern. Teil 1. Infrarotspektroskopische und röntgenographische Beurteilung der Änderung des Ordnungszustandes. Angew Makromol Chem 185(186):155–167

Salmén L, Burgert I (2009) Cell wall features with regard to mechanical performance. A review. Holzforschung 63:121–129

Schmutzer M, Schwanninger M, Fackler K, Messner K, Gradinger C (2008) Comparison of methods to evaluate the potential of fungal growth on decay of spruce after short-time treatment. Int Biodeterior Biodegrad 61:319–324

Schwanninger M, Hinterstoisser B, Gradinger C, Messner K, Fackler K (2004a) Examination of spruce wood biodegraded by Ceriporiopsis subvermispora using near and mid infrared spectroscopy. J Near Infrared Spectrosc 12:397–409

Schwanninger M, Rodrigues J, Pereira H, Hinterstoisser B (2004b) Effects of short-time vibratory ball milling on the shape of FT-IR spectra of wood and cellulose. Vib Spectrosc 36:23–40

Schwanninger M, Rodrigues J, Fackler K (2011) A review of band assignments in near infrared spectra of wood and wood components. J Near Infrared Spectrosc 19:287–308

Sivonen H, Nuopponen M, Maunu SL, Sundholm F, Vuorinen T (2003) Carbon-thirteen cross-polarization magic angle spinning nuclear magnetic resonance and Fourier transform infrared studies of thermally modified wood exposed to brown and soft rot fungi. Appl Spectrosc 57:266–273

Stirling R, Trung T, Breuil C, Bicho P (2007) Predicting wood decay and density using NIR spectroscopy. Wood Fiber Sci 39:414–423

Sykacek E, Gierlinger N, Wimmer R, Schwanninger M (2006) Prediction of natural durability of commercial available European and Siberian larch by near-infrared spectroscopy. Holzforschung 60:643–647

Takahashi M, Nishimoto K (1967) Studies on the mechanism of wood decay (2). Changes in infrared spectra of Buna and Sugi wood as decay proceeds. Wood Res 42:1–12

Tsuchikawa S (2007) A review of recent near infrared research for wood and paper. Appl Spectrosc Rev 42:43–71

Tsuchikawa S, Schwanninger M (2012) A review of recent near infrared research for wood and paper (Part 2). Appl Spectrosc Rev (in print): doi: 10.1080/05704928.05702011.05621079

Tsuchikawa S, Siesler HW (2003) Near-infrared spectroscopic monitoring of the diffusion process of deuterium-labeled molecules in wood. Part I: Softwood. Appl Spectrosc 57:667–674

Watanabe A, Morita S, Ozaki Y (2006) Temperature-dependent structural changes in hydrogen bonds in microcrystalline cellulose studied by infrared and near-infrared spectroscopy with perturbation-correlation moving-window two-dimensional correlation analysis. Appl Spectrosc 60:611–618

Wickholm K, Larsson PT, Iversen T (1998) Assignment of noncrystalline forms in cellulose I by CP/MAS 13C NMR spectroscopy. Carbohydr Res 312:123–129

Wienhaus O, Niemz P, Wagenfuehr A (1989) Characterization of microbiologically damaged wood. Part 2. Investigations to measure the decay of firwood by brown rot fungi using infrared spectroscopic techniques. Holztechnologie 30:151–153

Winandy JE, Morrell JJ (1993) Relationship between incipient decay, strength, and chemical composition of douglas-fir heartwood. Wood Fiber Sci 25:278–288

Yelle DJ, Ralph J, Li F, Hammel KE (2008) Evidence for cleavage of lignin by a brown rot basidiomycete. Environ Microbiol 10:1844–1849

Yelle DJ, Wei D, Ralph J, Hammel KE (2011) Multidimensional NMR analysis reveals truncated lignin structures in wood decayed by the brown rot basidiomycete Postia placenta. Environ Microbiol 13(4):1091–1100

Zabel RA, Morrell JJ (1992) Wood microbiology—decay and its prevention. Academic Press, San Diego