How does your virus grow? Understanding and interfering with virus assembly

Trends in Biotechnology - Tập 21 - Trang 536-542 - 2003
Adam Zlotnick1, Stephen J. Stray1
1Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73190 USA

Tài liệu tham khảo

Endy, 2000, Toward antiviral strategies that resist viral escape, Antimicrob. Agents Chemother., 44, 1097, 10.1128/AAC.44.4.1097-1099.2000 Rossmann, 1984, Constraints on the assembly of spherical virus particles, Virology, 134, 1, 10.1016/0042-6822(84)90267-8 Prevelige, 1998, Inhibiting virus-capsid assembly by altering the polymerisation pathway, Trends Biotechnol., 16, 61, 10.1016/S0167-7799(97)01154-2 Salunke, 1989, Polymorphism in the assembly of polyomavirus capsid protein VP1, Biophys. J., 56, 887, 10.1016/S0006-3495(89)82735-3 Johnson, 1996, Functional implications of protein–protein interactions in icosahedral viruses, Proc. Natl. Acad. Sci. U. S. A., 93, 27, 10.1073/pnas.93.1.27 Zlotnick, 2002, A small molecule inhibits and misdirects assembly of hepatitis B virus capsids, J. Virol., 76, 4844, 10.1128/JVI.76.10.4848-4854.2002 Deres, 2003, Inhibition of hepatitis B virus replication by drug-induced depletion of nucleocapsids, Science, 299, 893, 10.1126/science.1077215 Tang, 2003, Antiviral inhibition of the HIV-1 capsid protein, J. Mol. Biol., 327, 1013, 10.1016/S0022-2836(03)00289-4 Smith, 1999, Picornaviruses: epitopes, canyons, and pockets, Adv. Virus Res., 52, 1, 10.1016/S0065-3527(08)60297-3 Hadfield, 1999, Analysis of three structurally related antiviral compounds in complex with human rhinovirus 16, Proc. Natl. Acad. Sci. U. S. A., 96, 14730, 10.1073/pnas.96.26.14730 Tsang, 2001, Kinetic analysis of the effect of poliovirus receptor on viral uncoating: the receptor as a catalyst, J. Virol., 75, 4984, 10.1128/JVI.75.11.4984-4989.2001 Phelps, 1998, Influence of an antiviral compound on the temperature dependence of viral protein flexibility and packing: a molecular dynamics study, J. Mol. Biol., 276, 331, 10.1006/jmbi.1997.1542 Phelps, 1999, Molecular dynamics investigation of the effect of an antiviral compound on human rhinovirus, Protein Sci., 8, 2281, 10.1110/ps.8.11.2281 Speelman, 2001, Molecular dynamics simulations of human rhinovirus and an antiviral compound, Biophys. J., 80, 121, 10.1016/S0006-3495(01)75999-1 Lee, 2003, Human rhinovirus type 16: mutant V1210A requires capsid-binding drug for assembly of pentamers to form virions during morphogenesis, J. Virol., 77, 6235, 10.1128/JVI.77.11.6235-6244.2003 Khor, 2002, Novel strategy for inhibiting viral entry by use of a cellular receptor–plant virus chimera, J. Virol., 76, 4412, 10.1128/JVI.76.9.4412-4419.2002 Zlotnick, 1994, To build a virus capsid. An equilibrium model of the self assembly of polyhedral protein complexes, J. Mol. Biol., 241, 59, 10.1006/jmbi.1994.1473 Endres, 2002, Model-based analysis of assembly kinetics for virus capsids or other spherical polymers, Biophys. J., 83, 1217, 10.1016/S0006-3495(02)75245-4 Bruinsma, 2003, Viral self-assembly as a thermodynamic process, Phys. Rev. Lett., 90, 248101, 10.1103/PhysRevLett.90.248101 Berger, 1994, Local rule-based theory of virus shell assembly, Proc. Natl. Acad. Sci. U. S. A., 91, 7732, 10.1073/pnas.91.16.7732 Schwartz, 1998, Local rules simulation of the kinetics of virus capsid self-assembly, Biophys. J., 75, 2626, 10.1016/S0006-3495(98)77708-2 Rapaport, 1999, Supramolecular self-assembly: molecular dynamics modeling of polyhedral shell formation, Comp. Phys. Comm., 121, 231, 10.1016/S0010-4655(99)00319-7 Ceres, 2002, Weak protein–protein interactions are sufficient to drive assembly of hepatitis B virus capsids, Biochemistry, 41, 11525, 10.1021/bi0261645 Reddy, 1998, Energetics of quasiequivalence: computational analysis of protein–protein interactions in icosahedral viruses, Biophys. J., 74, 546, 10.1016/S0006-3495(98)77813-0 Singh, 2003, Observed hysteresis of virus capsid disassembly is implicit in kinetic models of assembly, J. Biol. Chem., 278, 18249, 10.1074/jbc.M211408200 Zlotnick, 1999, A theoretical model successfully identifies features of hepatitis B virus capsid assembly, Biochemistry, 38, 14644, 10.1021/bi991611a Zlotnick, 2000, Mechanism of capsid assembly for an icosahedral plant virus, Virology, 277, 450, 10.1006/viro.2000.0619 Bancroft, 1970, The self-assembly of spherical plant viruses, Adv. Virus Res., 16, 99, 10.1016/S0065-3527(08)60022-6 Adolph, 1975, Reassembly of a spherical virus in mild conditions, Nature, 255, 737, 10.1038/255737a0 Prevelige, 1993, Nucleation and growth phases in the polymerization of coat and scaffolding subunits into icosahedral procapsid shells, Biophys. J., 64, 824, 10.1016/S0006-3495(93)81443-7 Zlotnick, 1996, Dimorphism of hepatitis B virus capsids is strongly influenced by the C-terminus of the capsid protein, Biochemistry, 35, 7412, 10.1021/bi9604800 Wynne, 1999, The crystal structure of the human hepatitis B virus capsid, Mol. Cell, 3, 771, 10.1016/S1097-2765(01)80009-5 Silva, 1988, Pressure-induced dissociation of brome mosaic virus, J. Mol. Biol., 199, 149, 10.1016/0022-2836(88)90385-3 Da Poian, 1993, Reversible pressure dissociation of R17 bacteriophage. The physical individuality of virus particles, J. Mol. Biol., 231, 999, 10.1006/jmbi.1993.1347 Li, 1994, Poliovirus neutralization by antibodies to internal epitopes of VP4 and VP1 results from reversible exposure of these sequences at physiological temperature, J. Virol., 68, 3965, 10.1128/JVI.68.6.3965-3970.1994 Pumpens, 1995, Hepatitis B virus core particles as epitope carriers, Intervirology, 38, 63, 10.1159/000150415 Bothner, 1998, Evidence of viral capsid dynamics using limited proteolysis and mass spectrometry, J. Biol. Chem., 273, 673, 10.1074/jbc.273.2.673 Bothner, 1999, Crystallographically identical virus capsids display different properties in solution, Nat. Struct. Biol., 6, 114, 10.1038/5799 Lewis, 1998, Antiviral agent blocks breathing of the common cold virus, Proc. Natl. Acad. Sci. U. S. A., 95, 6774, 10.1073/pnas.95.12.6774 Douglas, 1998, Host-guest encapsulation of materials by assembled virus protein cages, Nature, 393, 152, 10.1038/30211 Speir, 1995, Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by X-ray crystallography and cryo-electron microscopy, Structure, 3, 63, 10.1016/S0969-2126(01)00135-6 Lucas, 2002, The crystallographic structure of brome mosaic virus, J. Mol. Biol., 317, 95, 10.1006/jmbi.2001.5389 Smith, 2000, The structure of cucumber mosaic virus and comparison to cowpea chlorotic mottle virus, J. Virol., 74, 7578, 10.1128/JVI.74.16.7578-7586.2000 Rossmann, 1989, Icosahedral RNA virus structure, Annu. Rev. Biochem., 58, 533, 10.1146/annurev.bi.58.070189.002533 Krol, 1999, RNA-controlled polymorphism in the in vivo assembly of 180-subunit and 120-subunit virions from a single capsid protein, Proc. Natl. Acad. Sci. U. S. A., 96, 13650, 10.1073/pnas.96.24.13650 Willits, 2003, Effects of the cowpea chlorotic mottle bromovirus β-hexamer structure on virion assembly, Virology, 306, 280, 10.1016/S0042-6822(02)00054-5 Lucas, 2001, Crystallization of brome mosaic virus and T=1 brome mosaic virus particles following a structural transition, Virology, 286, 290, 10.1006/viro.2000.0897 Erickson, 1985, The structure of a T=1 icosahedral empty particle from southern bean mosaic virus, Science, 229, 625, 10.1126/science.4023701 Lokesh, 2002, A molecular switch in the capsid protein controls the particle polymorphism in an icosahedral virus, Virology, 292, 211, 10.1006/viro.2001.1242 Lowy, 1999, Papillomaviruses: prophylactic vaccine prospects, Biochim. Biophys. Acta, 1423, M1 Koutsky, 2002, A controlled trial of a human papillomavirus type 16 vaccine, N. Engl. J. Med., 347, 1645, 10.1056/NEJMoa020586 Chromy, 2003, Chaperone-mediated in vitro assembly of polyomavirus capsids, Proc. Natl. Acad. Sci. U. S. A., 100, 10477, 10.1073/pnas.1832245100 Ganser, 1999, Assembly and analysis of conical models for the HIV-1 core, Science, 283, 80, 10.1126/science.283.5398.80 Lanman, 2002, Kinetic analysis of the role of intersubunit interactions in human immunodeficiency virus type 1 capsid protein assembly in vitro, J. Virol., 76, 6900, 10.1128/JVI.76.14.6900-6908.2002 Prevelige, 1994, Pressure denaturation of the bacteriophage P22 coat protein and its entropic stabilization in icosahedral shells, Biophys. J., 66, 1631, 10.1016/S0006-3495(94)80955-5 Capen, 2000, Folding defects caused by single amino acid substitutions in a subunit are not alleviated by assembly, Biochemistry, 39, 1142, 10.1021/bi991956t Thuman-Commike, 1999, Mechanism of scaffolding-directed virus assembly suggested by comparison of scaffolding-containing and scaffolding-lacking P22 procapsids, Biophys. J., 76, 3267, 10.1016/S0006-3495(99)77479-5 Bernal, 2003, Structural studies of bacteriophage α3 assembly, J. Mol. Biol., 325, 11, 10.1016/S0022-2836(02)01201-9 Newcomb, 1999, Assembly of the herpes simplex virus procapsid from purified components and identification of small complexes containing the major capsid and scaffolding proteins, J. Virol., 73, 4239, 10.1128/JVI.73.5.4239-4250.1999 Heymann, 2003, Dynamics of herpes simplex virus capsid maturation visualized by time-lapse cryo-electron microscopy, Nat. Struct. Biol., 10, 334, 10.1038/nsb922 Conway, 2001, Virus maturation involving large subunit rotations and local re-folding, Science, 292, 744, 10.1126/science.1058069 Hendrix, 1998, Bacteriophage HK97 head assembly: a protein ballet, Adv. Virus Res., 50, 235, 10.1016/S0065-3527(08)60810-6 Galisteo, 1993, Conformational transformations in the protein lattice of phage P22 procapsids, Biophys. J., 65, 227, 10.1016/S0006-3495(93)81073-7 Schneemann, 1992, Maturation cleavage required for infectivity of a nodavirus, J. Virol., 66, 6728, 10.1128/JVI.66.11.6728-6734.1992 Schneemann, 1998, The structure and function of nodavirus particles: a paradigm for understanding chemical biology, Adv. Virus Res., 50, 381, 10.1016/S0065-3527(08)60812-X Krishna, 2003, Analysis of RNA packaging in wild-type and mosaic protein capsids of flock house virus using recombinant baculovirus vectors, Virology, 305, 10, 10.1006/viro.2002.1740 Taylor, 2002, Large-scale, pH-dependent, quaternary structure changes in an RNA virus capsid are reversible in the absence of subunit autoproteolysis, J. Virol., 76, 9972, 10.1128/JVI.76.19.9972-9980.2002 Caspar, 1962, Physical principles in the construction of regular viruses, Cold Spring Harb. Symp. Quant. Biol., 27, 1, 10.1101/SQB.1962.027.001.005 Fuller, 1997, Cryo-electron microscopy reveals ordered domains in the immature HIV-1 particle, Curr. Biol., 7, 729, 10.1016/S0960-9822(06)00331-9