How does your virus grow? Understanding and interfering with virus assembly
Tài liệu tham khảo
Endy, 2000, Toward antiviral strategies that resist viral escape, Antimicrob. Agents Chemother., 44, 1097, 10.1128/AAC.44.4.1097-1099.2000
Rossmann, 1984, Constraints on the assembly of spherical virus particles, Virology, 134, 1, 10.1016/0042-6822(84)90267-8
Prevelige, 1998, Inhibiting virus-capsid assembly by altering the polymerisation pathway, Trends Biotechnol., 16, 61, 10.1016/S0167-7799(97)01154-2
Salunke, 1989, Polymorphism in the assembly of polyomavirus capsid protein VP1, Biophys. J., 56, 887, 10.1016/S0006-3495(89)82735-3
Johnson, 1996, Functional implications of protein–protein interactions in icosahedral viruses, Proc. Natl. Acad. Sci. U. S. A., 93, 27, 10.1073/pnas.93.1.27
Zlotnick, 2002, A small molecule inhibits and misdirects assembly of hepatitis B virus capsids, J. Virol., 76, 4844, 10.1128/JVI.76.10.4848-4854.2002
Deres, 2003, Inhibition of hepatitis B virus replication by drug-induced depletion of nucleocapsids, Science, 299, 893, 10.1126/science.1077215
Tang, 2003, Antiviral inhibition of the HIV-1 capsid protein, J. Mol. Biol., 327, 1013, 10.1016/S0022-2836(03)00289-4
Smith, 1999, Picornaviruses: epitopes, canyons, and pockets, Adv. Virus Res., 52, 1, 10.1016/S0065-3527(08)60297-3
Hadfield, 1999, Analysis of three structurally related antiviral compounds in complex with human rhinovirus 16, Proc. Natl. Acad. Sci. U. S. A., 96, 14730, 10.1073/pnas.96.26.14730
Tsang, 2001, Kinetic analysis of the effect of poliovirus receptor on viral uncoating: the receptor as a catalyst, J. Virol., 75, 4984, 10.1128/JVI.75.11.4984-4989.2001
Phelps, 1998, Influence of an antiviral compound on the temperature dependence of viral protein flexibility and packing: a molecular dynamics study, J. Mol. Biol., 276, 331, 10.1006/jmbi.1997.1542
Phelps, 1999, Molecular dynamics investigation of the effect of an antiviral compound on human rhinovirus, Protein Sci., 8, 2281, 10.1110/ps.8.11.2281
Speelman, 2001, Molecular dynamics simulations of human rhinovirus and an antiviral compound, Biophys. J., 80, 121, 10.1016/S0006-3495(01)75999-1
Lee, 2003, Human rhinovirus type 16: mutant V1210A requires capsid-binding drug for assembly of pentamers to form virions during morphogenesis, J. Virol., 77, 6235, 10.1128/JVI.77.11.6235-6244.2003
Khor, 2002, Novel strategy for inhibiting viral entry by use of a cellular receptor–plant virus chimera, J. Virol., 76, 4412, 10.1128/JVI.76.9.4412-4419.2002
Zlotnick, 1994, To build a virus capsid. An equilibrium model of the self assembly of polyhedral protein complexes, J. Mol. Biol., 241, 59, 10.1006/jmbi.1994.1473
Endres, 2002, Model-based analysis of assembly kinetics for virus capsids or other spherical polymers, Biophys. J., 83, 1217, 10.1016/S0006-3495(02)75245-4
Bruinsma, 2003, Viral self-assembly as a thermodynamic process, Phys. Rev. Lett., 90, 248101, 10.1103/PhysRevLett.90.248101
Berger, 1994, Local rule-based theory of virus shell assembly, Proc. Natl. Acad. Sci. U. S. A., 91, 7732, 10.1073/pnas.91.16.7732
Schwartz, 1998, Local rules simulation of the kinetics of virus capsid self-assembly, Biophys. J., 75, 2626, 10.1016/S0006-3495(98)77708-2
Rapaport, 1999, Supramolecular self-assembly: molecular dynamics modeling of polyhedral shell formation, Comp. Phys. Comm., 121, 231, 10.1016/S0010-4655(99)00319-7
Ceres, 2002, Weak protein–protein interactions are sufficient to drive assembly of hepatitis B virus capsids, Biochemistry, 41, 11525, 10.1021/bi0261645
Reddy, 1998, Energetics of quasiequivalence: computational analysis of protein–protein interactions in icosahedral viruses, Biophys. J., 74, 546, 10.1016/S0006-3495(98)77813-0
Singh, 2003, Observed hysteresis of virus capsid disassembly is implicit in kinetic models of assembly, J. Biol. Chem., 278, 18249, 10.1074/jbc.M211408200
Zlotnick, 1999, A theoretical model successfully identifies features of hepatitis B virus capsid assembly, Biochemistry, 38, 14644, 10.1021/bi991611a
Zlotnick, 2000, Mechanism of capsid assembly for an icosahedral plant virus, Virology, 277, 450, 10.1006/viro.2000.0619
Bancroft, 1970, The self-assembly of spherical plant viruses, Adv. Virus Res., 16, 99, 10.1016/S0065-3527(08)60022-6
Adolph, 1975, Reassembly of a spherical virus in mild conditions, Nature, 255, 737, 10.1038/255737a0
Prevelige, 1993, Nucleation and growth phases in the polymerization of coat and scaffolding subunits into icosahedral procapsid shells, Biophys. J., 64, 824, 10.1016/S0006-3495(93)81443-7
Zlotnick, 1996, Dimorphism of hepatitis B virus capsids is strongly influenced by the C-terminus of the capsid protein, Biochemistry, 35, 7412, 10.1021/bi9604800
Wynne, 1999, The crystal structure of the human hepatitis B virus capsid, Mol. Cell, 3, 771, 10.1016/S1097-2765(01)80009-5
Silva, 1988, Pressure-induced dissociation of brome mosaic virus, J. Mol. Biol., 199, 149, 10.1016/0022-2836(88)90385-3
Da Poian, 1993, Reversible pressure dissociation of R17 bacteriophage. The physical individuality of virus particles, J. Mol. Biol., 231, 999, 10.1006/jmbi.1993.1347
Li, 1994, Poliovirus neutralization by antibodies to internal epitopes of VP4 and VP1 results from reversible exposure of these sequences at physiological temperature, J. Virol., 68, 3965, 10.1128/JVI.68.6.3965-3970.1994
Pumpens, 1995, Hepatitis B virus core particles as epitope carriers, Intervirology, 38, 63, 10.1159/000150415
Bothner, 1998, Evidence of viral capsid dynamics using limited proteolysis and mass spectrometry, J. Biol. Chem., 273, 673, 10.1074/jbc.273.2.673
Bothner, 1999, Crystallographically identical virus capsids display different properties in solution, Nat. Struct. Biol., 6, 114, 10.1038/5799
Lewis, 1998, Antiviral agent blocks breathing of the common cold virus, Proc. Natl. Acad. Sci. U. S. A., 95, 6774, 10.1073/pnas.95.12.6774
Douglas, 1998, Host-guest encapsulation of materials by assembled virus protein cages, Nature, 393, 152, 10.1038/30211
Speir, 1995, Structures of the native and swollen forms of cowpea chlorotic mottle virus determined by X-ray crystallography and cryo-electron microscopy, Structure, 3, 63, 10.1016/S0969-2126(01)00135-6
Lucas, 2002, The crystallographic structure of brome mosaic virus, J. Mol. Biol., 317, 95, 10.1006/jmbi.2001.5389
Smith, 2000, The structure of cucumber mosaic virus and comparison to cowpea chlorotic mottle virus, J. Virol., 74, 7578, 10.1128/JVI.74.16.7578-7586.2000
Rossmann, 1989, Icosahedral RNA virus structure, Annu. Rev. Biochem., 58, 533, 10.1146/annurev.bi.58.070189.002533
Krol, 1999, RNA-controlled polymorphism in the in vivo assembly of 180-subunit and 120-subunit virions from a single capsid protein, Proc. Natl. Acad. Sci. U. S. A., 96, 13650, 10.1073/pnas.96.24.13650
Willits, 2003, Effects of the cowpea chlorotic mottle bromovirus β-hexamer structure on virion assembly, Virology, 306, 280, 10.1016/S0042-6822(02)00054-5
Lucas, 2001, Crystallization of brome mosaic virus and T=1 brome mosaic virus particles following a structural transition, Virology, 286, 290, 10.1006/viro.2000.0897
Erickson, 1985, The structure of a T=1 icosahedral empty particle from southern bean mosaic virus, Science, 229, 625, 10.1126/science.4023701
Lokesh, 2002, A molecular switch in the capsid protein controls the particle polymorphism in an icosahedral virus, Virology, 292, 211, 10.1006/viro.2001.1242
Lowy, 1999, Papillomaviruses: prophylactic vaccine prospects, Biochim. Biophys. Acta, 1423, M1
Koutsky, 2002, A controlled trial of a human papillomavirus type 16 vaccine, N. Engl. J. Med., 347, 1645, 10.1056/NEJMoa020586
Chromy, 2003, Chaperone-mediated in vitro assembly of polyomavirus capsids, Proc. Natl. Acad. Sci. U. S. A., 100, 10477, 10.1073/pnas.1832245100
Ganser, 1999, Assembly and analysis of conical models for the HIV-1 core, Science, 283, 80, 10.1126/science.283.5398.80
Lanman, 2002, Kinetic analysis of the role of intersubunit interactions in human immunodeficiency virus type 1 capsid protein assembly in vitro, J. Virol., 76, 6900, 10.1128/JVI.76.14.6900-6908.2002
Prevelige, 1994, Pressure denaturation of the bacteriophage P22 coat protein and its entropic stabilization in icosahedral shells, Biophys. J., 66, 1631, 10.1016/S0006-3495(94)80955-5
Capen, 2000, Folding defects caused by single amino acid substitutions in a subunit are not alleviated by assembly, Biochemistry, 39, 1142, 10.1021/bi991956t
Thuman-Commike, 1999, Mechanism of scaffolding-directed virus assembly suggested by comparison of scaffolding-containing and scaffolding-lacking P22 procapsids, Biophys. J., 76, 3267, 10.1016/S0006-3495(99)77479-5
Bernal, 2003, Structural studies of bacteriophage α3 assembly, J. Mol. Biol., 325, 11, 10.1016/S0022-2836(02)01201-9
Newcomb, 1999, Assembly of the herpes simplex virus procapsid from purified components and identification of small complexes containing the major capsid and scaffolding proteins, J. Virol., 73, 4239, 10.1128/JVI.73.5.4239-4250.1999
Heymann, 2003, Dynamics of herpes simplex virus capsid maturation visualized by time-lapse cryo-electron microscopy, Nat. Struct. Biol., 10, 334, 10.1038/nsb922
Conway, 2001, Virus maturation involving large subunit rotations and local re-folding, Science, 292, 744, 10.1126/science.1058069
Hendrix, 1998, Bacteriophage HK97 head assembly: a protein ballet, Adv. Virus Res., 50, 235, 10.1016/S0065-3527(08)60810-6
Galisteo, 1993, Conformational transformations in the protein lattice of phage P22 procapsids, Biophys. J., 65, 227, 10.1016/S0006-3495(93)81073-7
Schneemann, 1992, Maturation cleavage required for infectivity of a nodavirus, J. Virol., 66, 6728, 10.1128/JVI.66.11.6728-6734.1992
Schneemann, 1998, The structure and function of nodavirus particles: a paradigm for understanding chemical biology, Adv. Virus Res., 50, 381, 10.1016/S0065-3527(08)60812-X
Krishna, 2003, Analysis of RNA packaging in wild-type and mosaic protein capsids of flock house virus using recombinant baculovirus vectors, Virology, 305, 10, 10.1006/viro.2002.1740
Taylor, 2002, Large-scale, pH-dependent, quaternary structure changes in an RNA virus capsid are reversible in the absence of subunit autoproteolysis, J. Virol., 76, 9972, 10.1128/JVI.76.19.9972-9980.2002
Caspar, 1962, Physical principles in the construction of regular viruses, Cold Spring Harb. Symp. Quant. Biol., 27, 1, 10.1101/SQB.1962.027.001.005
Fuller, 1997, Cryo-electron microscopy reveals ordered domains in the immature HIV-1 particle, Curr. Biol., 7, 729, 10.1016/S0960-9822(06)00331-9