High variability of chloroplast DNA in three Mediterranean evergreen oaks indicates complex evolutionary history

Heredity - Tập 93 Số 5 - Trang 510-515 - 2004
Pilar Jiménez1, Unai López de Heredia1, Carmen Collada2, Zaida Lorenzo1, Luis Gil1
1Unidad de Anatomía, Fisiología y Genética, ETSI Montes, Universidad Politécnica de Madrid, Ciudad Universitaria s/n, Madrid, Spain
2Departamento de Biotecnología, ETSI Montes, Universidad Politécnica de Madrid, Ciudad Universitaria s/n, Madrid, Spain

Tóm tắt

Từ khóa


Tài liệu tham khảo

Barbero M, Loisel R, Quezel P (1992). Biogeography, ecology and history of Quercus ilex ecosystems in Mediterranean region. Vegetatio 99-100: 14–19.

Belahbib N, Pemonge M-H, Ouassou A, Sbay H, Kremer A, Petit RJ (2001). Frequent cytoplasmic exchanges between oak species that are not closely related: Quercus suber and Q. ilex in Morocco. Mol Ecol 10: 2003–2012.

Boavida LC, Silva JP, Feij JA (2001). Sexual reproduction in the cork oak (Quercus suber L.). II. Crossing intra- and interspecific barriers. Sex Plant Reprod 14: 143–152.

Cannon CH, Manos PS (2003). Phylogeography of the Southeast Asian stone oaks (Lithocarpus). J Biogeogr 30: 211–226.

Deguilloux MF, Dumolin-Lapègue S, Gielly L, Grivet D, Petit RJ (2003). A set of primers for the amplification of chloroplast microsatellites in Quercus. Mol Ecol Notes 3: 24–27.

Demesure B, Sodzi N, Petit RJ (1995). A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Mol Ecol 4: 129–131.

Doyle JJ, Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13–15.

Dumolin S, Demesure B, Petit RJ (1995). Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR method. Theor Appl Genet 91: 1253–1256.

Dumolin-Lapègue S, Pemonge M-H, Petit RJ (1997a). An enlarged set of consensus primers for the study of organelle DNA in plants. Mol Ecol 6: 393–397.

Dumolin-Lapègue S, Demesure B, Le Corre V, Fineschi S, Petit RJ (1997b). Phylogeographic structure of white oaks throughout the European continent. Genetics 146: 1475–1487.

Elena-Rosselló JA, de la Cruz PJ (1998). Levels of genetic diversity in natural, mixed populations of oak species. In: Steiner KC (ed) Diversity and Adaptation in Oak Species. Proceedings of the 2nd Meeting of Working Party 2.08.05 of the IUFRO, Genetics of Quercus October 12–17, 1997, University Park, PA, USA. pp 166–171.

Excoffier L, Smouse PE (1994). Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony. Genetics 136: 343–359.

Ferris C, Oliver RP, Davy AJ, Hewitt GM (1993). Native oak chloroplasts reveal an ancient divide across Europe. Mol Ecol 2: 337–344.

Grivet D, Heinze, B, Vendramin GG, Petit RJ (2001). Genome walking with consensus primers: application to the Large Single Copy region of chloroplast DNA. Mol Ecol Notes 1: 345–349.

Lumaret R, Mir C, Michaud H, Raynal V (2002). Phylogeographical variation of chloroplast DNA in holm oak (Quercus ilex L.). Mol Ecol 11: 2327–2336.

Manos PS, Doyle JJ, Nixon C (1999). Phylogeny, biogeography and processes of molecular differentiation in Quercus subgenus Quercus (Fagaceae). Mol Phylogenet Evol 12: 333–349.

Michaud H, Toumi L, Lumaret R, Li TX, Romane F, di Giusto F (1995). Effect of geographical discontinuity on genetic variation in Quercus ilex L. (holm oak). Evidence from enzyme polymorphism. Heredity 74: 590–606.

Olalde M, Herrán A, Espinel S, Goicoechea PG. (2002). White oaks phylogeography in the Iberian Peninsula. For Ecol Manage 156: 89–102.

Palmé AE, Vendramin GG (2002). Chloroplast DNA variation postglacial recolonization and hybridization in hazel. Corylus avellana. Mol Ecol 11: 1769–1779.

Paradis E, Strimmer K, Claude J, Noel Y, Bolker B (2003). Analysis of Phylogenetics and Evolution. URL http://www.R-Project.org .

Petit RJ, Pineau E, Demesure B, Bacilieri R, Ducousso A, Kremer A (1997). Chloroplast DNA footprints of postglacial recolonization by oaks. Proc Natl Acad Sci USA 94: 9996–10001.

Petit RJ, Csaikl UM, Bordàcs S, Burg K, Coart E, Cottrell J et al (2002). Chloroplast DNA variation in European white oaks. Phylogeography and patterns of diversity based on data from over 2600 populations. For Ecol Manage 156: 5–26.

Prim RC (1957). Shortest connection networks and some generalizations. Bell System Tech J 36: 1389–1401.

Provan J, Soranzo N, Wilson NJ, Goldstein DB, Powell W (1999). A low mutation rate for chloroplast microsatellites. Genetics 153: 943–947.

Smith RL, Sytsma KJ (1990). Evolution of Populus nigra (Sect. Aigeiros): introgressive hybridization and the chloroplast contribution of Populus alba (Sect. Leuce). Am J Bot 77: 1176–1187.

Taberlet P, Gielly L, Patou G, Bouvet J (1991). Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol Biol 17: 1105–1109.

Toumi L, Lumaret R (1998). Genetic variation at allozyme loci in cork-oak (Quercus suber L.): the role of phylogeography and genetic introgression by other Mediterranean oak species and human activities. Theor Appl Genet 97: 647–656.

Toumi L, Lumaret R (2001). Allozyme characterisation of four Mediterranean evergreen oak species. Biochem Syst Ecol 29: 799–817.

Varela MC, Valdiviesso T (1995). Phenological phases of Quercus suber L. flowering. For Genet 3: 93–102.

Whittemore AT, Schaal BA (1991). Interespecific gene flow in oaks. Proc Natl Acad Sci USA 88: 2540–2544.

Wolfe KH, Li WH, Sharp PM (1987). Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast and nuclear DNA. Proc Natl Acad Sci USA 84: 9054–9058.