Here a virus, there a virus, everywhere the same virus?

Hobbie, 1977, Use of nuclepore filters for counting bacteria by epifluorescence microscopy, Appl. Environ. Microbiol., 33, 1225, 10.1128/AEM.33.5.1225-1228.1977

Azam, 1977, Dissolved ATP in the sea and its utilization by marine bacteria, Nature, 267, 696, 10.1038/267696a0

Riemann, 1978, Differentiation between heterotrophic and photosynthetic plankton by size fractionation, glucose uptake, ATP and chlorophyll content, Oikos, 31, 358, 10.2307/3543663

Karl, 1985, Measurement and significance of ATP and adenine nucleotide pool turnover in microbial cells and environmental samples, J Microbiol Meth, 3, 125, 10.1016/0167-7012(85)90040-5

Fuhrman, 1982, Thymidine incorporation as a measure of heterotrophic bacterioplankton production in marine surface waters: evaluation and field results, Mar. Biol., 66, 109, 10.1007/BF00397184

Caron, 1988, Dynamics of protistan carbon and nutrient cycling, J. Protozool., 35, 247, 10.1111/j.1550-7408.1988.tb04335.x

Berman, 1987, Nutrient flux between bacteria, bacterivorous nanoplanktonic protists and algae, Mar. Microb. Food Webs, 2, 69

Sherr, 1984, Abundance and productivity of heterotrophic nanoplankton in Georgia coastal waters, J. Plankton Res., 6, 195, 10.1093/plankt/6.1.195

Bjørnsen, 1988, Trophic interactions between heterotrophic nanoflagellates and bacterioplankton in manipulated seawater enclosures, Limnol. Oceanogr., 33, 409, 10.4319/lo.1988.33.3.0409

Fuhrman, 1984, Do bacteria-sized marine eucaryotes consume significant bacterial production?, Science, 224, 1257, 10.1126/science.224.4654.1257

Bergh, 1989, High abundance of viruses found in aquatic environments, Nature, 340, 467, 10.1038/340467a0

Anderson, N.G., ed. (1967) Isolation of viral particles from large volumes. In Transmission of viruses by the Water Route (Berg, G., ed.), pp. 75–88, Interscience Publishers

Anderson, 1967, New centrifugal methods for virus isolation, Vol. II, 137

Wommack, 2000, Virioplankton: Viruses in aquatic ecosystems, Microbiol. Mol. Biol. Rev., 64, 69, 10.1128/MMBR.64.1.69-114.2000

Heldal, 1991, Production and decay of viruses in aquatic environments, Mar. Ecol. Prog. Ser., 72, 205, 10.3354/meps072205

Steward, 1992, Estimation of virus production in the sea: I. Method development, Mar. Microb. Food Webs, 6, 57

Steward, 1992, Estimation of virus production in the sea: II. Field results, Mar. Microb. Food Webs, 6, 79

Fuhrman, 1995, Viruses and protists cause similar bacterial mortality in coastal seawater, Limnol. Oceanogr., 40, 1236, 10.4319/lo.1995.40.7.1236

Moebus, 1981, Bacteriophage sensitivity patterns among bacteria isolated from marine waters, Helgoländer Meeresunters, 34, 375, 10.1007/BF02074130

Moebus, 1991, Preliminary observations on the concentration of marine bacteriophages in the water around Helgoland, Helgoländer Meeresunters, 45, 411, 10.1007/BF02367176

Moebus, 1992, Further investigation on the concentration of marine bacteriophages in the water around Helgoland with reference to the phage-host systems encountered, Helgoländer Meeresunters, 46, 275, 10.1007/BF02367099

Suttle, 1993, Marine cyanophage infecting oceanic and coastal strains of Synechococcus: abundance, morphology, cross-infectivity, and growth characteristics, Mar. Ecol. Prog. Ser., 92, 99, 10.3354/meps092099

Sullivan, 2003, Cyanophages infecting the oceanic cyanobacterium Prochlorococcus, Nature, 424, 1047, 10.1038/nature01929

Lane, 1985, Rapid determination of 16S rRNA sequences for phylogenetic analysis, Proc. Natl. Acad. Sci. U. S. A., 82, 6955, 10.1073/pnas.82.20.6955

Giovannoni, 2000, Evolution, diversity, and molecular ecology of marine prokaryotes, 47

Rohwer, 2002, The phage proteomic tree: A genome based taxonomy for phage, J. Bacteriol., 184, 4529, 10.1128/JB.184.16.4529-4535.2002

Short, 2005, Nearly identical bacteriophage structural gene sequences are widely distributed in marine and freshwater environments, Appl. Environ. Microbiol., 71, 480, 10.1128/AEM.71.1.480-486.2005

Zhong, 2002, Phylogenetic diversity of marine cyanophage isolates and natural virus communities as revealed by sequences of viral capsid assembly protein gene g20, Appl. Environ. Microbiol., 68, 1576, 10.1128/AEM.68.4.1576-1584.2002

Fuller, 1998, Occurence of a sequence in marine cyanophages similar to that of T4 g20 and its application to PCR-based detection and quantification techniques, Appl. Environ. Microbiol., 64, 2051, 10.1128/AEM.64.6.2051-2060.1998

Dorigo, 2004, Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget, Appl. Environ. Microbiol., 70, 1017, 10.1128/AEM.70.2.1017-1022.2004

Chen, 1996, Genetic diversity in marine algal virus communities as revealed by sequence analysis of DNA polymerase genes, Appl. Environ. Microbiol., 62, 2869, 10.1128/AEM.62.8.2869-2874.1996

Chen, 1996, Evolutionary relationships among large double-stranded DNA viruses that infect microalgae and other organisms as inferred from DNA polymerase genes, Virology, 219, 170, 10.1006/viro.1996.0234

Breitbart, 2004, Global distribution of nearly identical phage-encoded DNA sequences, FEMS Microbiol. Lett., 236, 249, 10.1111/j.1574-6968.2004.tb09654.x

Culley, 2003, High diversity of unknown picorna-like viruses in the sea, Nature, 424, 1054, 10.1038/nature01886

Breitbart, 2002, Genomic analysis of uncultured marine viral communities, Proc. Natl. Acad. Sci. U. S. A., 99, 14250, 10.1073/pnas.202488399

Breitbart, 2004, Diversity and population structure of a nearshore marine sediment viral community, Proc. R. Soc. Lond. B. Biol. Sci., 271, 565, 10.1098/rspb.2003.2628

Breitbart, 2003, Metagenomic analyses of an uncultured viral community from human feces, J. Bacteriol., 185, 6220, 10.1128/JB.185.20.6220-6223.2003

Cann, 2005, Analysis of the virus population present in equine faeces indicates the presence of hundreds of uncharacterized virus genomes, Virus Genes, 30, 151, 10.1007/s11262-004-5624-3

Lander, 1988, Genomic mapping by fingerprinting random clones: a mathematical analysis, Genomics, 2, 231, 10.1016/0888-7543(88)90007-9

Rohwer, 2003, Global phage diversity, Cell, 113, 141, 10.1016/S0092-8674(03)00276-9

Drake, 1998, Rates of Spontaneous Mutation, Genetics, 148, 1667, 10.1093/genetics/148.4.1667

Drake, 1999, Mutation rates among RNA viruses, Proc. Natl. Acad. Sci. U. S. A., 96, 13910, 10.1073/pnas.96.24.13910

Sniegowski, 2000, The evolution of mutation rates: separating causes from consequences, BioEssays, 22, 1057, 10.1002/1521-1878(200012)22:12<1057::AID-BIES3>3.0.CO;2-W

Hendrix, 1999, Evolutionary relationships among diverse bacteriophages and prophages: All the world's a phage, Proc. Natl. Acad. Sci. U. S. A., 96, 2192, 10.1073/pnas.96.5.2192

Sano, 2004, Movement of viruses between biomes, Appl. Environ. Microbiol., 70, 5842, 10.1128/AEM.70.10.5842-5846.2004

Jensen, 1998, Prevalence of broad-host-range lytic bacteriophages of Sphaerotilus natans, Escherichia coli, and Pseudomonas aeruginosa, Appl. Environ. Microbiol., 64, 575, 10.1128/AEM.64.2.575-580.1998

Marston, 2003, Genetic diversity and temporal variation in the cyanophage community infecting marine Synechococcus species in Rhode Island's coastal waters, Appl. Environ. Microbiol., 69, 4639, 10.1128/AEM.69.8.4639-4647.2003

Wommack, 1999, Hybridization analysis of Chesapeake Bay virioplankton, Appl. Environ. Microbiol., 65, 241, 10.1128/AEM.65.1.241-250.1999

Wommack, 1999, Population dynamics of Chesapeake Bay virioplankton: Total-community analysis by pulsed-field gel electrophoresis, Appl. Environ. Microbiol., 65, 231, 10.1128/AEM.65.1.231-240.1999

Thingstad, 1997, Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand, Aquat. Microb. Ecol., 13, 19, 10.3354/ame013019

Mathias, 1994, Seasonal variations of virus abundance and viral control of the bacterial production in a backwater system of the Danube river, Appl. Environ. Microbiol., 61, 3734, 10.1128/AEM.61.10.3734-3740.1995

1995

Campbell, 1983, Evolution of the lambdoid phage, 365

Botstein, 1974, Properties of hybrids between Salmonella phage P22 and coliphage lambda, Nature, 251, 584, 10.1038/251584a0

Juhala, 2000, Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages, J. Mol. Biol., 299, 27, 10.1006/jmbi.2000.3729

Mosig, 2001, Two recombination-dependent DNA replication pathways of bacteriophage T4, and their roles in mutagenesis and horizontal gene transfer, Proc. Natl. Acad. Sci. U. S. A., 98, 8306, 10.1073/pnas.131007398

Hendrix, 2000, The origins and ongoing evolution of viruses, Trends Microbiol., 8, 504, 10.1016/S0966-842X(00)01863-1

Davis, 2002, Mobile genetic elements and bacterial pathogenesis, 1040

Mann, 2003, Marine ecosystems: bacterial photosynthesis genes in a virus, Nature, 424, 741, 10.1038/424741a

Lindell, 2004, Photosynthesis genes in Prochlorococcus cyanophage, Proc. Natl. Acad. Sci. U. S. A., 101, 11013, 10.1073/pnas.0401526101

Bailey, 2004, Cyanophage infection and photoinhibition in marine cyanobacteria, Res. Microbiol., 155, 720, 10.1016/j.resmic.2004.06.002

Sullivan, M. et al. Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol. 3, e144

Rohwer, 2000, The complete genomic sequence of the marine phage Roseophage SIO1 shares homology with non-marine phages, Limnol. Oceanogr., 42, 408, 10.4319/lo.2000.45.2.0408

Chen, 2002, Genomic sequence and evolution of marine cyanophage P60: A new insight on lytic and lysogenic phages, Appl. Environ. Microbiol., 68, 2589, 10.1128/AEM.68.5.2589-2594.2002

Jacob, 1961, Genetic regulatory mechanisms in the synthesis of proteins, J. Mol. Biol., 3, 318, 10.1016/S0022-2836(61)80072-7

Fischer, 1999, Finding families for genomic ORFans, Bioinformatics., 15, 759, 10.1093/bioinformatics/15.9.759

Danovaro, 2000, Viral density and virus-to-bacterium ratio in deep-sea sediments of the Eastern Mediterranean, Appl. Environ. Microbiol., 66, 1857, 10.1128/AEM.66.5.1857-1861.2000

Guixa-Boixareu, 1996, Viral lysis and bacterivory as prokaryotic loss factors along a salinity gradient, Aquat. Microb. Ecol., 11, 21, 10.3354/ame011215

Rice, 2001, Viruses from extreme thermal environments, Proc. Natl. Acad. Sci. U. S. A., 98, 13341, 10.1073/pnas.231170198

Jiang, 2003, Abundance, distribution, and diversity of viruses in alkaline, hypersaline Mono Lake, California, Microb Ecol., 47, 9, 10.1007/s00248-003-1023-x

Kepner, 1998, Viruses in Antarctic lakes, Limnol. Oceanogr., 43, 1754, 10.4319/lo.1998.43.7.1754

Woese, 1990, Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya, Proc. Natl. Acad. Sci. U. S. A., 87, 4576, 10.1073/pnas.87.12.4576

Riesenfeld, 2004, METAGENOMICS: Genomic analysis of microbial communities, Annu. Rev. Genet., 38, 525, 10.1146/annurev.genet.38.072902.091216

van Regenmortel, 1990, Virus species, a much overlooked but essential concept in virus classification, Intervirology, 31, 241, 10.1159/000150159