Hepatic transcriptomic and metabolic responses of hybrid striped bass (Morone saxatilis×Morone chrysops) to acute and chronic hypoxic insult
Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics - Tập 18 - Trang 1-9 - 2016
Tài liệu tham khảo
Atalah, 2011, Importance of dietary arachidonic acid for the growth, survival and stress resistance of larval European sea bass (Dicentrarchus labrax) fed high dietary docosahexaenoic and eicosapentaenoic acids, Aquac. Res., 42, 1261, 10.1111/j.1365-2109.2010.02714.x
Bacon, 1998, Regulation of the Drosophila bHLH-PAS protein Sima by hypoxia: functional evidence for homology with mammalian HIF-1, Biochem. Biophys. Res. Commun., 249, 811, 10.1006/bbrc.1998.9234
Bauer, 2008, Ontologizer 2.0—a multifunctional tool for GO term enrichment analysis and data exploration, Bioinformatics, 24, 1650, 10.1093/bioinformatics/btn250
Bechmann, 2012, The interaction of hepatic lipid and glucose metabolism in liver diseases, J. Hepatol., 56, 952, 10.1016/j.jhep.2011.08.025
Beck, 2012, The impact of mitochondrial and thermal stress on the bioenergetics and reserve respiratory capacity of fish cell lines, J. Aquat. Anim. Health, 24, 244, 10.1080/08997659.2012.720637
Beisiegel, 1998, Lipoprotein metabolism, Eur Heart J., 19
Bostrom, 2006, Hypoxia converts human macrophages into triglyceride-loaded foam cells, Arterioscler. Thromb. Vasc. Biol., 26, 1871, 10.1161/01.ATV.0000229665.78997.0b
Boya, 2013, Emerging regulation and functions of autophagy, Nat. Cell Biol., 15, 713, 10.1038/ncb2788
Bradford, 1976, A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein–dye binding, Anal. Biochem., 72, 248, 10.1016/0003-2697(76)90527-3
Burggren, 1982, “Air gulping” improves blood oxygen transport during aquatic hypoxia in the goldfish Carassius auratus, Physiol. Zool., 55, 327, 10.1086/physzool.55.4.30155860
Contos, 2000, Lysophosphatidic acid receptors, Mol. Pharmacol., 58, 1188, 10.1124/mol.58.6.1188
Cottet-Rousselle, 2011, Cytometric assessment of mitochondria using fluorescent probes, Cytometry A, 79, 405, 10.1002/cyto.a.21061
Coutant, 1985, Striped bass, temperature, and dissolved oxygen: a speculative hypothesis for environmental risk, Trans. Am. Fish. Soc., 114, 31, 10.1577/1548-8659(1985)114<31:SBTADO>2.0.CO;2
Diaz, 2001, Overview of hypoxia around the world, J. Environ. Qual., 30, 275, 10.2134/jeq2001.302275x
Douglas, 1987, Radiotracking hybrid striped bass in Spring Lake, Illinois, to determine temperature and oxygen preferences, North Am. J. Fish Manage, 7, 531, 10.1577/1548-8659(1987)7<531:RHSBIS>2.0.CO;2
Ferrick, 2008, Mitochondrial dysfunction assessed quantitatively in real time by measuring the extracellular flux of oxygen and protons, 373
Flynn, 1979, Influence of the arachidonic acid cascade on the in vitro hepatic response to hypoxia, Prostaglandins, 17, 39, 10.1016/0090-6980(79)90073-X
García-Domingo, 1999, DIO-1 is a gene involved in onset of apoptosis in vitro, whose misexpression disrupts limb development, Proc. Natl. Acad. Sci. U. S. A., 96, 7992, 10.1073/pnas.96.14.7992
García-Domingo, 2003, Death inducer-obliterator 1 triggers apoptosis after nuclear translocation and caspase upregulation, Mol. Cell. Biol., 23, 3216, 10.1128/MCB.23.9.3216-3225.2003
Glick, 2010, Autophagy: cellular and molecular mechanisms, J. Pathol., 221, 3, 10.1002/path.2697
Goretzki, 1997, Receptor-mediated endocytosis of urokinase-type plasminogen activator is regulated by cAMP-dependent protein kinase, J. Cell Sci., 110, 1395, 10.1242/jcs.110.12.1395
Grabherr, 2011, Full-length transcriptome assembly from RNA-Seq data without a reference genome, Nat. Biotechnol., 29, 644, 10.1038/nbt.1883
Gracey, 2011, Hypoxia-induced mobilization of stored triglycerides in the euryoxic goby Gillichthys mirabilis, J. Exp. Biol., 214, 3005, 10.1242/jeb.059907
Green, 2015, Hypoxia affects performance traits and body composition of juvenile hybrid striped bass (Morone chrysops×M. saxatilis), Aquacult. Res.
Grossmann, 2007, Improved detection of overrepresentation of Gene-Ontology annotations with parent–child analysis, Bioinformatics, 23, 3024, 10.1093/bioinformatics/btm440
Gotz, 2008, High-throughput functional annotation and data mining with the Blast2GO suite, Nucleic Acids Res., 36, 3420, 10.1093/nar/gkn176
Hochachka, 1986, Defence strategies against hypoxia and hypothermia, Science, 231, 234, 10.1126/science.2417316
Jiang, 2001, The Caenorhabditis elegans hif-1 gene encodes a bHLH-PAS protein that is required for adaptation to hypoxia, Proc. Natl. Acad. Sci. USA, 98, 7916, 10.1073/pnas.141234698
Jungermann, 1988, Metabolic zonation of liver parenchyma, Semin. Liver Dis., 8, 329, 10.1055/s-2008-1040554
Kang, 1997, A novel arachidonate-preferring acyl-CoA synthetase is present in steroidogenic cells of the rat adrenal, ovary, and testis, Proc. Natl. Acad. Sci. U. S. A., 94, 2880, 10.1073/pnas.94.7.2880
Karliner, 2001, The lysophospholipids sphingosine-1-phosphate and lysophosphatidic acid enhance survival during hypoxia in neonatal rat cardiac myocytes, J. Mol. Cell. Cardiol., 33, 1713, 10.1006/jmcc.2001.1429
Kopp, 2014, Prolonged hypoxia increases survival even in zebrafish (Danio rerio) showing cardiac arrhythmia, PLoS One, 9, 10.1371/journal.pone.0089099
LeMoine, 2008, Role of the PGC-1 family in the metabolic adaptation of goldfish to diet and temperature, J. Exp. Biol., 211, 1448, 10.1242/jeb.014951
Li, 2015, The dual role of autophagy under hypoxia-involvement of interaction between autophagy and apoptosis, Apoptosis, 20, 769, 10.1007/s10495-015-1110-8
Li, 2014, Transcriptome annotation and SNP discovery in white bass (Morone chrysops) and striped bass (Morone saxatilis), Anim. Genet., 45, 885, 10.1111/age.12211
Li, 2001, Identification of a major cyclic AMP-dependent protein kinase A phosphorylation site within the cytoplasmic tail of the low-density lipoprotein receptor-related protein: implication for receptor-mediated endocytosis, Mol. Cell. Biol., 21, 1185, 10.1128/MCB.21.4.1185-1195.2001
Lin, 2005, Hyperlipidemic effects of dietary saturated fats mediated through PGC-1β coactivation of SREBP, Cell, 120, 261, 10.1016/j.cell.2004.11.043
Mustafa, 2015, Assessment of oxidative damage to DNA, transcriptional expression of key genes, lipid peroxidation and histopathological changes in carp Cyprinus carpio L. following exposure to chronic hypoxic and subsequent recovery in normoxic conditions, Mutagenesis, 30, 107, 10.1093/mutage/geu048
Nikinmaa, 2005, Oxygen-dependent gene expression in fishes, Am. J. Physiol. Regul Integr Comp Physiol, 288, R1079, 10.1152/ajpregu.00626.2004
Pfaffl, 2002, Relative expression software tool (REST©) for group-wise comparison and statistical analysis of relative expression results in real-time PCR, Nucleic Acids Res., 30, 10.1093/nar/30.9.e36
Randall, 1992, Effects of diet on responses to hypoxia in sturgeon (Acipenser naccarii), J. Exp. Biol., 170, 113, 10.1242/jeb.170.1.113
Reading, 2012, An ovary transcriptome for all maturational stages of the striped bass (Morone saxatilis), a highly advanced perciform fish, BMC Res. Notes, 5, 111, 10.1186/1756-0500-5-111
Shohet, 2007, Keeping the engine primed: HIF factors as key regulators of cardiac metabolism and angiogenesis during ischemia, J. Mol. Med., 85, 1309, 10.1007/s00109-007-0279-x
Sonoda, 2002, A novel phosphatidic acid-selective phospholipase A1 that produces lysophosphatidic acid, J. Biol. Chem., 277, 34254, 10.1074/jbc.M201659200
Sonoda, 2007, PGC-1β controls mitochondrial metabolism to modulate circadian activity, adaptive thermogenesis, and hepatic steatosis, Proc. Natl. Acad. Sci, 104, 5223, 10.1073/pnas.0611623104
Tigyi, 2003, Molecular mechanisms of lysophosphatidic acid action, Prog. Lipid Res., 42, 498, 10.1016/S0163-7827(03)00035-3
Tomsig, 2009, Lipid phosphate phosphohydrolase type 1 (LPP1) degrades extracellular lysophosphatidic acid in vivo, Biochem. J., 419, 611, 10.1042/BJ20081888
Ton, 2003, Gene expression profile of zebrafish exposed to hypoxia during development, Physiol. Genomics, 13, 97, 10.1152/physiolgenomics.00128.2002
Whitmer, 1978, Control of fatty acid metabolism in ischemic and hypoxic hearts, J. Biol. Chem., 253, 4305, 10.1016/S0021-9258(17)34720-8
Wu, 2003, Aquatic hypoxia is an disrupter and impairs fish reproduction, Environ. Sci. Technol., 37, 1137, 10.1021/es0258327