Hemolymph and transcriptome analysis to understand innate immune responses to hypoxia in Pacific abalone

Breitburg, 2018, Declining oxygen in the global ocean and coastal waters, Science, 359, 10.1126/science.aam7240 Burton, 2009, The role of Bcl-2 family member BNIP3 in cell death and disease: NIPping at the heels of cell death, Cell Death Differ., 16, 515, 10.1038/cdd.2008.185 Bussell, 2008, Changes in the immune response and metabolic fingerprint of the mussel, Mytilus edulis (Linnaeus) in response to lowered salinity and physical stress, J. Exp. Mar. Biol. Ecol., 358, 78, 10.1016/j.jembe.2008.01.018 Cardinaud, 2015, The early stages of the immune response of the European abalone Haliotis tuberculata to a Vibrio harveyi infection, Dev. Comp. Immunol., 51, 287, 10.1016/j.dci.2015.02.019 Chen, 2007, Immune responses of the scallop Chlamys farreri after air exposure to different temperatures, J. Exp. Mar. Biol. Ecol., 345, 52, 10.1016/j.jembe.2007.01.007 Chen, 2016, Assessment of the thermal tolerance of abalone based on cardiac performance in Haliotis discus hannai, H. gigantea and their interspecific hybrid, Aquaculture, 465, 258, 10.1016/j.aquaculture.2016.09.004 Cheng, 1988, In vivo effects of heavy metals on cellular defense mechanisms of Crassostrea virginica: total and differential cell counts, J. Invertebr. Pathol., 51, 207, 10.1016/0022-2011(88)90027-4 Cheng, 2004, Effect of dissolved oxygen on the immune response of Haliotis diversicolor supertexta and its susceptibility to Vibrio parahaemolyticus, Aquaculture, 232, 103, 10.1016/S0044-8486(03)00488-5 Diaz, 2008, Spreading dead zones and consequences for marine ecosystems, Science, 321, 926, 10.1126/science.1156401 Donaghy, 2009, Flow cytometry studies on the populations and immune parameters of the hemocytes of the Suminoe oyster, Crassostrea ariakensis, Fish Shellfish Immunol., 27, 296, 10.1016/j.fsi.2009.05.010 Guttman, 2010, Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs, Nat. Biotechnol., 28, 503, 10.1038/nbt.1633 Kvamme, 2013, Modulation of innate immune responses in Atlantic salmon by chronic hypoxia-induced stress, Fish Shellfish Immunol., 34, 55, 10.1016/j.fsi.2012.10.006 Lacoste, 2001, Stress-induced catecholamine changes in the hemolymph of the oyster Crassostrea gigas, Gen. Comp. Endocrinol., 122, 181, 10.1006/gcen.2001.7629 Lai, 2016, Hypoxia alters steroidogenesis in female marine medaka through miRNAs regulation, Aquat. Toxicol., 172, 1, 10.1016/j.aquatox.2015.12.012 Lai, 2016, Transcriptomic responses of marine medaka's ovary to hypoxia, Aquat. Toxicol., 177, 476, 10.1016/j.aquatox.2016.06.023 Li, 2012, Acclimation-dependent expression of heat shock protein 70 in Pacific abalone (Haliotis discus hannai Ino) and its acute response to thermal exposure, Chin. J. Oceanol. Limnol., 30, 146, 10.1007/s00343-012-1026-x Li, 2016, Redox homeostasis protects mitochondria through accelerating ROS conversion to enhance hypoxia resistance in cancer cells, Sci. Rep., 6 Li, 2017, Differential gene expression profiles and alternative isoform regulations in gill of Nile tilapia in response to acute hypoxia, Mar. Biotechnol., 19, 551, 10.1007/s10126-017-9774-4 Manduzio, 2005, The point about oxidative stress in molluscs, ISJ, 2, 91 Mitta, 2000, Original involvement of antimicrobial peptides in mussel innate immunity, FEBS Lett., 486, 185, 10.1016/S0014-5793(00)02192-X Miyagi, 2014, The TIF1β-HP1 system maintains transcriptional integrity of hematopoietic stem cells, Stem Cell Rep., 2, 145, 10.1016/j.stemcr.2013.12.008 Monari, 2007, Effects of high temperatures on functional responses of haemocytes in the clam Chamelea gallina, Fish Shellfish Immunol., 22, 98, 10.1016/j.fsi.2006.03.016 Pampanin, 2002, Air exposure and functionality of Chamelea gallina haemocytes: effects on haematocrit, adhesion, phagocytosis and enzyme contents, Comp. Biochem. Physiol. A Mol. Integr. Physiol., 131, 605, 10.1016/S1095-6433(01)00512-8 Park, 2012, Assessment of immune parameters of manila clam Ruditapes philippinarum in different physiological conditions using flow cytometry, Ocean Sci. J., 47, 19, 10.1007/s12601-012-0002-x Parry, 2004, Interactive effects of temperature and copper on immunocompetence and disease susceptibility in mussels (Mytilus edulis), Aquat. Toxicol., 69, 311, 10.1016/j.aquatox.2004.06.003 Pipe, 1995, Environmental contaminants influencing immune function in marine bivalve molluscs, Fish Shellfish Immunol., 5, 581, 10.1016/S1050-4648(95)80043-3 Pires, 2010, Exposure to acute hypoxia induces a transient DNA damage response which includes Chk1 and TLK1, Cell Cycle, 9, 2502, 10.4161/cc.9.13.12059 Smith, 2017, Redox signaling during hypoxia in mammalian cells, Redox Biol., 13, 228, 10.1016/j.redox.2017.05.020 Sussarellu, 2010, Transcriptomic response of the Pacific oyster Crassostrea gigas to hypoxia, Mar. Genomics, 3, 133, 10.1016/j.margen.2010.08.005 Terahara, 2006, Differences in integrin-dependent phagocytosis among three hemocyte subpopulations of the Pacific oyster “Crassostrea gigas”, Dev. Comp. Immunol., 30, 667, 10.1016/j.dci.2005.09.009 Trapnell, 2010, Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation, Nat. Biotechnol., 28, 511, 10.1038/nbt.1621 Vaquer-Sunyer, 2008, Thresholds of hypoxia for marine biodiversity, Proc. Natl. Acad. Sci., 105, 15452, 10.1073/pnas.0803833105 Wang, 2011, Immune responses to combined effect of hypoxia and high temperature in the green-lipped mussel Perna viridis, Mar. Pollut. Bull., 63, 201, 10.1016/j.marpolbul.2011.05.035 Wang, 2012, Immune parameter changes of hemocytes in green-lipped mussel Perna viridis exposure to hypoxia and hyposalinity, Aquaculture, 356, 22, 10.1016/j.aquaculture.2012.06.001 Wang, 2014, Immune toxicity of TiO2 under hypoxia in the green-lipped mussel Perna viridis based on flow cytometric analysis of hemocyte parameters, Sci. Total Environ., 470, 791, 10.1016/j.scitotenv.2013.09.060 Wang, 2016, Hypoxia causes transgenerational impairments in reproduction of fish, Nat. Commun., 7 Xia, 2018, Acute hypoxia stress induced abundant differential expression genes and alternative splicing events in heart of tilapia, Gene, 639, 52, 10.1016/j.gene.2017.10.002 Xiao, 2005, Studies on mass summer mortality of cultured zhikong scallops (Chlamys farreri Jones et Preston) in China, Aquaculture, 250, 602, 10.1016/j.aquaculture.2005.05.002 De Zoysa, 2009, Transcriptional analysis of antioxidant and immune defense genes in disk abalone (Haliotis discus discus) during thermal, low-salinity and hypoxic stress, Comp. Biochem. Physiol. B: Biochem. Mol. Biol., 154, 387, 10.1016/j.cbpb.2009.08.002