Gut Microbiota and Its Mysteries

Tremaroli, 2012, Functional interactions between the gut microbiota and host metabolism, Nature, 489, 242, 10.1038/nature11552 Sommer, 2013, The gut microbiota – Masters of host development and physiology, Nat Rev Microbiol, 11, 227, 10.1038/nrmicro2974 Cummings, 1997, Role of intestinal bacteria in nutrient metabolism, Clin Nutr, 16, 11, 10.1016/S0261-5614(97)80252-X Pryde, 2002, The microbiology of butyrate formation in the human colon, FEMS Microbiol Lett, 217, 133, 10.1111/j.1574-6968.2002.tb11467.x Bäckhed, 2005, Host-bacterial mutualism in the human intestine, Science, 307, 1915, 10.1126/science.1104816 Claesson, 2011, Composition, variability, and temporal stability of the intestinal microbiota of the elderly, Proc Natl Acad Sci U S A, 108, 4586, 10.1073/pnas.1000097107 Arumugam, 2011, Enterotypes of the human gut microbiome, Nature, 473, 174, 10.1038/nature09944 Ley, 2005, Obesity alters gut microbial ecology, Proc Natl Acad Sci U S A, 102, 11070, 10.1073/pnas.0504978102 Turnbaugh, 2009, A core gut microbiome in obese and lean twins, Nature, 457, 480, 10.1038/nature07540 Yatsunenko, 2012, Human gut microbiome viewed across age and geography, Nature, 486, 222, 10.1038/nature11053 Wu, 2011, Linking long-term dietary patterns with gut microbial enterotypes, Science, 334, 105, 10.1126/science.1208344 Org, 2016, Sex differences and hormonal effects on gut microbiota composition in mice, Gut Microbes, 7, 313, 10.1080/19490976.2016.1203502 Favier, 2002, Molecular monitoring of succession of bacterial communities in human neonates, Appl Environ Microbiol, 68, 219, 10.1128/AEM.68.1.219-226.2002 Carrol, 2013, Normal human microbiota, 171 Dandona, 2004, Inflammation: The link between insulin resistance, obesity and diabetes, Trends Immunol, 25, 4, 10.1016/j.it.2003.10.013 Abdallah Ismail, 2011, Frequency of firmicutes and bacteroidetes in gut microbiota in obese and normal weight Egyptian children and adults, Arch Med Sci, 7, 501, 10.5114/aoms.2011.23418 Pushpanathan, 2016, Gut microbiota in type 2 diabetes individuals and correlation with monocyte chemoattractant protein1 and interferon gamma from patients attending a tertiary care centre in Chennai, India, Indian J Endocrinol Metab, 20, 523, 10.4103/2230-8210.183474 Sokol, 2008, Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients, Proc Natl Acad Sci U S A, 105, 16731, 10.1073/pnas.0804812105 Ott, 2004, Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease, Gut, 53, 685, 10.1136/gut.2003.025403 Wellen, 2005, Inflammation, stress, and diabetes, J Clin Invest, 115, 1111, 10.1172/JCI25102 Hammer, 2011, Gut microbiota and inflammatory bowel disease, Dig Dis, 29, 550, 10.1159/000332981 Kwon, 2019, Modulation of gut microbiota composition by serotonin signaling influences intestinal immune response and susceptibility to colitis, Cell Mol Gastroenterol Hepatol, 7, 709, 10.1016/j.jcmgh.2019.01.004 Scanlan, 2008, Culture-independent analysis of the gut microbiota in colorectal cancer and polyposis, Environ Microbiol, 10, 789, 10.1111/j.1462-2920.2007.01503.x De Almeida, 2019, Role of diet and gut microbiota on colorectal cancer immunomodulation, World J Gastroenterol, 25, 151, 10.3748/wjg.v25.i2.151 Marchesi, 2011, Towards the human colorectal cancer microbiome, PLoS One, 6, e20447, 10.1371/journal.pone.0020447 Borchers, 2009, Probiotics and immunity, J Gastroenterol, 44, 26, 10.1007/s00535-008-2296-0 Jonsson, 2017, Role of gut microbiota in atherosclerosis, Nat Rev Cardiol, 14, 79, 10.1038/nrcardio.2016.183 Karlsson, 2012, Symptomatic atherosclerosis is associated with an altered gut metagenome, Nat Commun, 3, 1245, 10.1038/ncomms2266 Marasco, 2016, Gut microbiota and celiac disease, Dig Dis Sci, 61, 1461, 10.1007/s10620-015-4020-2 Rossi, 2010, Editorial: Celiac disease and intestinal bacteria: Not only gluten?, J Leukoc Biol, 87, 749, 10.1189/jlb.1209784 Toivanen, 2003, Normal intestinal microbiota in the aetiopathogenesis of rheumatoid arthritis, Ann Rheum Dis, 62, 807, 10.1136/ard.62.9.807 Sender, 2016, Are we really vastly outnumbered? Revisiting the ratio of bacterial to host cells in humans, Cell, 164, 337, 10.1016/j.cell.2016.01.013 Mehal, 2013, The Gordian knot of dysbiosis, obesity and NAFLD, Nat Rev Gastroenterol Hepatol, 10, 637, 10.1038/nrgastro.2013.146 Jegatheesan, 2016, Preventive effects of citrulline on Western diet-induced non-alcoholic fatty liver disease in rats, Br J Nutr, 116, 191, 10.1017/S0007114516001793 Engstler, 2016, Insulin resistance alters hepatic ethanol metabolism: Studies in mice and children with non-alcoholic fatty liver disease, Gut, 65, 1564, 10.1136/gutjnl-2014-308379 Zeng, 2013, Fatty liver accompanies an increase in Lactobacillus species in the hind gut of C57BL/6 mice fed a high-fat diet, J Nutr, 143, 627, 10.3945/jn.112.172460 Zipris, 2013, The interplay between the gut microbiota and the immune system in the mechanism of type 1 diabetes, Curr Opin Endocrinol Diabetes Obes, 20, 265, 10.1097/MED.0b013e3283628569 Tai, 2015, The role of gut microbiota in the development of type 1, type 2 diabetes mellitus and obesity, Rev Endocr Metab Disord, 16, 55, 10.1007/s11154-015-9309-0 Cani, 2009, The role of the gut microbiota in energy metabolism and metabolic disease, Curr Pharm Des, 15, 1546, 10.2174/138161209788168164 Cani, 2008, Changes in gut microbiota control metabolic endotoxemia-induced inflammation in high-fat diet-induced obesity and diabetes in mice, Diabetes, 57, 1470, 10.2337/db07-1403 DuPont, 2011, The intestinal microbiota and chronic disorders of the gut, Nat Rev Gastroenterol Hepatol, 8, 523, 10.1038/nrgastro.2011.133 Sangeetha, 2011, Recent trends in the microbial production, analysis and application of fructo oligosaccharides, Trends Food Sci Technol, 16, 442, 10.1016/j.tifs.2005.05.003 Eeckhaut, 2008, Arabinoxylooligosaccharides from wheat bran inhibit Salmonella colonization in broiler chickens, Poult Sci, 87, 2329, 10.3382/ps.2008-00193 Jayamanohar, 2019, Prebiotic potential of water extractable polysaccharide from red kidney bean (Phaseolus vulgaris L.) LWT (Lebensmittel-Wissenschaft & Technologie), Food Sci Technol, 101, 703 Yehuda, 2012, Using probiotics in gastrointestinal disorders, Am J Gastroenterol, 1, 34, 10.1038/ajgsup.2012.7 Behnsen, 2013, Probiotics: Properties, examples, and specific applications, Cold Spring Harb Perspect Med, 3, a010074, 10.1101/cshperspect.a010074 Boudeau, 2003, Inhibitory effect of probiotic Escherichia coli strain Nissle 1917 on adhesion to and invasion of intestinal epithelial cells by adherent-invasive E. colni strains isolated from patients with Crohn’s disease, Aliment Pharmacol Ther, 18, 45, 10.1046/j.1365-2036.2003.01638.x van Nood, 2013, Duodenal infusion of donor feces for recurrent clostridium difficile, N Engl J Med, 368, 407, 10.1056/NEJMoa1205037 Bakken, 2011, Treating clostridium difficile infection with fecal microbiota transplantation, Clin Gastroenterol Hepatol, 9, 1044, 10.1016/j.cgh.2011.08.014 Bäckhed, 2012, Defining a healthy human gut microbiome: Current concepts, future directions, and clinical applications, Cell Host Microbe, 12, 611, 10.1016/j.chom.2012.10.012 Ley, 2006, Ecological and evolutionary forces shaping microbial diversity in the human intestine, Cell, 124, 837, 10.1016/j.cell.2006.02.017