Glycoproteomic Analysis of the Secretome of Human Endothelial Cells

Mayr, 2004, Vascular proteomics: linking proteomic and metabolomic changes, Proteomics, 4, 3751, 10.1002/pmic.200400947 Pula, 2008, Proteomic analysis of secretory proteins and vesicles in vascular research, Proteomics Clin. Appl., 2, 882, 10.1002/prca.200800040 Pober, 2007, Evolving functions of endothelial cells in inflammation, Nat. Rev. Immunol., 7, 803, 10.1038/nri2171 Cai, 2000, Endothelial dysfunction in cardiovascular diseases: the role of oxidant stress, Circ. Res., 87, 840, 10.1161/01.RES.87.10.840 Libby, 2001, Inflammation and thrombosis: the clot thickens, Circulation, 103, 1718, 10.1161/01.CIR.103.13.1718 Ross, 1999, Atherosclerosis—an inflammatory disease, N. Engl. J. Med., 340, 115, 10.1056/NEJM199901143400207 Pellitteri-Hahn, 2006, Improved mass spectrometric proteomic profiling of the secretome of rat vascular endothelial cells, J. Proteome Res., 5, 2861, 10.1021/pr060287k Tunica, 2009, Proteomic analysis of the secretome of human umbilical vein endothelial cells using a combination of free-flow electrophoresis and nanoflow LC-MS/MS, Proteomics, 9, 4991, 10.1002/pmic.200900065 Flora, 2008, Identification of in vitro differential cell secretions due to cigarette smoke condensate exposure using nanoflow capillary liquid chromatography and high-resolution mass spectrometry, Anal. Bioanal. Chem., 391, 2845, 10.1007/s00216-008-2197-3 Burghoff, 2011, Secretome of human endothelial cells under shear stress, J. Proteome Res., 10, 1160, 10.1021/pr100937a Hocking, 2010, Intrinsic depot-specific differences in the secretome of adipose tissue, preadipocytes, and adipose tissue-derived microvascular endothelial cells, Diabetes, 59, 3008, 10.2337/db10-0483 Griffoni, 2011, Modification of proteins secreted by endothelial cells during modeled low gravity exposure, J. Cell. Biochem., 112, 265, 10.1002/jcb.22921 Brioschi, 2013, Proteomic analysis of endothelial cell secretome: a means of studying the pleiotropic effects of Hmg-CoA reductase inhibitors, J. Proteomics, 78, 346, 10.1016/j.jprot.2012.10.003 Castagna, 1982, Direct activation of calcium-activated, phospholipid-dependent protein kinase by tumor-promoting phorbol esters, J. Biol. Chem., 257, 7847, 10.1016/S0021-9258(18)34459-4 Jacobs, 2008, The mammary epithelial cell secretome and its regulation by signal transduction pathways, J. Proteome Res., 7, 558, 10.1021/pr0704377 Zampetaki, 2010, Plasma microRNA profiling reveals loss of endothelial miR-126 and other microRNAs in type 2 diabetes, Circ. Res., 107, 810, 10.1161/CIRCRESAHA.110.226357 Margariti, 2010, Histone deacetylase 7 controls endothelial cell growth through modulation of beta-catenin, Circ. Res., 106, 1202, 10.1161/CIRCRESAHA.109.213165 Yin, 2010, Proteomics analysis of the cardiac myofilament subproteome reveals dynamic alterations in phosphatase subunit distribution, Mol. Cell. Proteomics, 9, 497, 10.1074/mcp.M900275-MCP200 Didangelos, 2010, Proteomics characterization of extracellular space components in the human aorta, Mol Cell. Proteomics, 9, 2048, 10.1074/mcp.M110.001693 Mayr, 2009, Proteomics, metabolomics, and immunomics on microparticles derived from human atherosclerotic plaques, Circ. Cardiovasc. Genet., 2, 379, 10.1161/CIRCGENETICS.108.842849 Pula, 2009, Proteomics identifies thymidine phosphorylase as a key regulator of the angiogenic potential of colony-forming units and endothelial progenitor cell cultures, Circ. Res., 104, 32, 10.1161/CIRCRESAHA.108.182261 Urbich, 2011, Proteomic characterization of human early pro-angiogenic cells, J. Mol. Cell. Cardiol., 50, 333, 10.1016/j.yjmcc.2010.11.022 Hagglund, 2004, A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation, J. Proteome Res., 3, 556, 10.1021/pr034112b Saba, 2012, Increasing the productivity of glycopeptides analysis by using higher-energy collision dissociation-accurate mass-product-dependent electron transfer dissociation, Int. J. Proteomics, 2012, 560391, 10.1155/2012/560391 Bern, 2007, Lookup peaks: a hybrid of de novo sequencing and database search for protein identification by tandem mass spectrometry, Anal Chem., 79, 1393, 10.1021/ac0617013 Antonov, 1986, Morphological alterations in endothelial cells from human aorta and umbilical vein induced by forskolin and phorbol 12-myristate 13-acetate: a synergistic action of adenylate cyclase and protein kinase C activators, Proc. Natl. Acad. Sci. U.S.A., 83, 9704, 10.1073/pnas.83.24.9704 Sadler, 1998, Biochemistry and genetics of von Willebrand factor, Annu. Rev. Biochem., 67, 395, 10.1146/annurev.biochem.67.1.395 Matsui, 1992, Structures of the asparagine-linked oligosaccharide chains of human von Willebrand factor. Occurrence of blood group A, B, and H(O) structures, J. Biol. Chem., 267, 8723, 10.1016/S0021-9258(19)50338-6 Canis, 2012, Mapping the N-glycome of human von Willebrand factor, Biochem. J., 447, 217, 10.1042/BJ20120810 Simak, 2002, Release of annexin V-binding membrane microparticles from cultured human umbilical vein endothelial cells after treatment with camptothecin, BMC Cell Biol., 3, 11, 10.1186/1471-2121-3-11 Hart, 2010, Glycomics hits the big time, Cell, 143, 672, 10.1016/j.cell.2010.11.008 Wollscheid, 2009, Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins, Nat. Biotechnol., 27, 378, 10.1038/nbt.1532 Leth-Larsen, 2010, Plasma membrane proteomics and its application in clinical cancer biomarker discovery, Mol. Cell. Proteomics, 9, 1369, 10.1074/mcp.R900006-MCP200 Madabhushi, 2012, von Willebrand factor (VWF) propeptide binding to VWF D'D3 domain attenuates platelet activation and adhesion, Blood, 119, 4769, 10.1182/blood-2011-10-387548 van Mourik, 1999, von Willebrand factor propeptide in vascular disorders: a tool to distinguish between acute and chronic endothelial cell perturbation, Blood, 94, 179, 10.1182/blood.V94.1.179.413k18_179_185 Pan, 2011, Mass spectrometry based glycoproteomics—from a proteomics perspective, Mol. Cell. Proteomics, 10, 10.1074/mcp.R110.003251 Maley, 1989, Characterization of glycoproteins and their associated oligosaccharides through the use of endoglycosidases, Anal. Biochem., 180, 195, 10.1016/0003-2697(89)90115-2 Flatmark, 1967, Multiple molecular forms of bovine heart cytochrome c. V. A comparative study of their physicochemical properties and their reactions in biological systems, J. Biol. Chem., 242, 2454, 10.1016/S0021-9258(18)95982-X Zielinska, 2010, Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints, Cell, 141, 897, 10.1016/j.cell.2010.04.012 Angel, 2007, A potential pitfall in 18O-based N-linked glycosylation site mapping, Rapid Commun. Mass Spectrom., 21, 674, 10.1002/rcm.2874 Palmisano, 2012, Chemical deamidation: a common pitfall in large-scale N-linked glycoproteomic mass spectrometry-based analyses, J. Proteome Res., 11, 1949, 10.1021/pr2011268 Wuhrer, 2005, Protein glycosylation analysis by liquid chromatography-mass spectrometry, J. Chromatogr. B Analyt. Technol. Biomed. Life Sci., 825, 124, 10.1016/j.jchromb.2005.01.030 Morelle, 2007, Analysis of protein glycosylation by mass spectrometry, Nat. Protoc., 2, 1585, 10.1038/nprot.2007.227 Zhang, 2005, Hybrid triple quadrupole-linear ion trap mass spectrometry in fragmentation mechanism studies: application to structure elucidation of buspirone and one of its metabolites, J. Mass Spectrom., 40, 1017, 10.1002/jms.876 Tissot, 2009, Glycoproteomics: past, present and future, FEBS Lett., 583, 1728, 10.1016/j.febslet.2009.03.049 Hang, 2003, A metabolic labeling approach toward proteomic analysis of mucin-type O-linked glycosylation, Proc. Natl. Acad. Sci. U.S.A., 100, 14846, 10.1073/pnas.2335201100 Zhao, 2011, Combining high-energy C-trap dissociation and electron transfer dissociation for protein O-GlcNAc modification site assignment, J. Proteome Res., 10, 4088, 10.1021/pr2002726 Owen, 2009, Proteomics-determined differences in the concanavalin-A-fractionated proteome of hippocampus and inferior parietal lobule in subjects with Alzheimer's disease and mild cognitive impairment: implications for progression of AD, J. Proteome Res., 8, 471, 10.1021/pr800667a Ghosh, 2004, Lectin affinity as an approach to the proteomic analysis of membrane glycoproteins, J. Proteome Res., 3, 841, 10.1021/pr049937f