GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans

Journal of Proteome Research - Tập 7 Số 4 - Trang 1650-1659 - 2008
Alessio Ceroni1, Kai Maaß1, Hildegard Geyer1, Rudolf Geyer1, Anne Dell1, Stuart M. Haslam1
1Division of Molecular Biosciences, Imperial College London, London, SW7 2AZ, U.K., and Institute of Biochemistry, Faculty of Medicine, University of Giessen, Germany

Tóm tắt

Từ khóa


Tài liệu tham khảo

Dell A., 2001, Science, 291, 2351, 10.1126/science.1058890

Spengler B., 1991, Rapid Commun. Mass Spectrom., 5, 198, 10.1002/rcm.1290050412

Weiskopf A. S., 1997, Rapid Commun. Mass Spectrom., 11, 1493, 10.1002/(SICI)1097-0231(199709)11:14<1493::AID-RCM40>3.0.CO;2-1

Hakansson K., 2003, Anal. Chem., 75, 3256, 10.1021/ac030015q

Domon B., 1988, Glycoconjugate J., 5, 397, 10.1007/BF01049915

Dell A., 1987, Adv. Carbohydr. Chem. Biochem., 45, 19, 10.1016/S0065-2318(08)60136-5

Eng J. K., 1994, J. Am. Soc. Mass Spectrom., 5, 976, 10.1016/1044-0305(94)80016-2

Joshi H. J., 2004, Proteomics, 1650, 10.1002/pmic.200300784

Kameyama A., 2005, Anal. Chem., 77, 4719, 10.1021/ac048350h

Cooper C. A., 2001, Proteomics, 1, 340, 10.1002/1615-9861(200102)1:2<340::AID-PROT340>3.0.CO;2-B

Maass K., 2007, Proteomics, 7, 4435, 10.1002/pmic.200700253

Goldberg D., 2005, Proteomics, 5, 865, 10.1002/pmic.200401071

Gaucher S. P., 2000, Anal. Chem., 72, 2331, 10.1021/ac000096f

Lapadula A. J., 2005, Anal. Chem., 77, 6271, 10.1021/ac050726j

Ethier M., 2003, Rapid Commun. Mass Spectrom., 17, 2713, 10.1002/rcm.1252

Tang H., 2005, Bioinformatics, 21, i431, 10.1093/bioinformatics/bti1038

Design Studies Related to the Development of Distributed, Web-based European Carbohydrate Databases (EUROCarbDB).http://www.eurocarbdb.org/.

ESF Science Policy Briefing 27, 2006, Structural Medicine: The Importance of Glycomics for Health and Disease

Packer, N. H.; von der Lieth, C. W.; Aoki-Kinoshita, K. F.; Lebrilla, C. B.; Paulson, J. C.; Raman, R.; Rudd, P.; Sasisekharan, R.; Taniguchi, N.; York, W. S.Frontiers in glycomics: Bioinformatics and biomarkers in disease—an NIH White Paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD (September 11–13, 2006).Proteomics2007,8(1), 8–20.

Clerens S., 2004, Proteomics, 4, 629, 10.1002/pmic.200300572

Lohmann K. K., 2004, Nucleic Acids Res., 32, W261, 10.1093/nar/gkh392

Ceroni A., 2007, Source Code Biol. Med., 2, 3, 10.1186/1751-0473-2-3

EUROCarbDB. Tools to analyse MS spectra: GlycoWorkbench. http://www.eurocarbdb.org/applications/ms-tools.

The Consortium for Functional Glycomics nomenclature for representing glycan structures.http://glycomics.scripps.edu/CFGnomenclature.pdf.

Royle L., 2006, Current Protocols in Protein Science

Bohne-Lang A., 2001, Carbohydr. Res., 336, 1, 10.1016/S0008-6215(01)00230-0

Lutteke T., 2006, Glycobiology, 16, 71R, 10.1093/glycob/cwj049

Ehud B., 2002, Trends Glycosc. Glycotechnol., 14, 127, 10.4052/tigg.14.127

Functional Glycomics Gateway.http://www.functionalglycomics.org/fg/.

Herget, S.; Ranzinger, R.; von der Lieth, C. W.A sequence format and namespace for complex oligo- and polysaccharides.http://www.eurocarbdb.org/recommendations/encoding/.

ProteomeCommons IO Meta-Information.http://www.proteomecommons.org/current/531/.

Lochnit G., 1995, Eur. J. Biochem., 228, 805, 10.1111/j.1432-1033.1995.tb20326.x

Lewandrowski U., 2005, Anal. Chem., 77, 3274, 10.1021/ac048399n

Dell A., 1994, Methods Enzymol., 230, 108, 10.1016/0076-6879(94)30010-0