Global sensitivity analysis of a single-cell HBV model for viral dynamics in the liver

Infectious Disease Modelling - Tập 6 - Trang 1220-1235 - 2021
Md Afsar Ali1, S.A. Means2, Harvey Ho3, Jane Heffernan1
1York University, Canada
2Massey University, New Zealand
3The University of Auckland, New Zealand

Tài liệu tham khảo

Aparna, 2015, Estimations of worldwide prevalence of chronic hepatitis B virus infection: A systematic review of data published between 1965 and 2013, Lancet, 386, 1546, 10.1016/S0140-6736(15)61412-X Blower, 1994, Sensitivity and uncertainty analysis of complex models of disease transmission: An HIV model, as an example, International Statistical Review/Revue Internationale De Statistique, 62, 229 Cangelosi, 2017, A multi-scale spatial model of hepatitis-B viral dynamics, PLoS One, 12, 10.1371/journal.pone.0188209 Elgouhari, 2008, Hepatitis B virus infection: Understanding its epidemiology, course, and diagnosis, Cleveland Clinic Journal of Medicine, 75, 881, 10.3949/ccjm.75a.07019 Fausto, 2003, The role of hepatocytes and oval cells in liver regeneration and repopulation, Mechanisms of Development, 120, 117, 10.1016/S0925-4773(02)00338-6 Ganem, 2004, Hepatitis B virus infection–natural history and clinical consequences, New England Journal of Medicine, 350, 1118, 10.1056/NEJMra031087 Goyal, 2016, Modelling the impact of cell-to-cell transmission in hepatitis B virus, PLoS One, 11, 10.1371/journal.pone.0161978 Guo, 2015, Metabolism and function of hepatitis B virus cccDNA: Implications for the development of cccDNA-targeting antiviral therapeutics, Antiviral Research, 122, 91, 10.1016/j.antiviral.2015.08.005 Helton, 2002, Illustration of sampling-based methods for uncertainty and sensitivity analysis, Risk Analysis : An Official Publication of the Society for Risk Analysis, 22, 591, 10.1111/0272-4332.00041 Helton, 2003, Latin hypercube sampling and the propagation of uncertainty in analyses of complex systems, Reliability Engineering & System Safety, 81, 23, 10.1016/S0951-8320(03)00058-9 Helton, 2004, Alternative representations of epistemic uncertainty, Reliability Engineering & System Safety, 85, 10.1016/j.ress.2004.03.001 Iman, 1982, Sensitivity-analysis techniques: Self-teaching curriculum, United States Iman, 1981, An approach to sensitivity analysis of computer models: Part I-introduction, input variable selection and preliminary variable assessment, Journal of Quality Technology, 13, 174, 10.1080/00224065.1981.11978748 Liu, 2019, HBV cccDNA: The stumbling block for treatment of HBV infection, Journal of clinical and translational hepatology, 7, 195, 10.14218/JCTH.2019.00047 Marino, 2008, A methodology for performing global uncertainty and sensitivity analysis in systems biology, Journal of Theoretical Biology, 254, 178, 10.1016/j.jtbi.2008.04.011 McKay, 1979, Comparison of three methods for selecting values of input variables in the analysis of output from a computer code, Technometrics, 21, 239 Means, 2020, Mathematical modeling for hepatitis B virus: Would spatial effects play a role and how to model it?, Frontiers in Physiology, 11, 146, 10.3389/fphys.2020.00146 Murray, 2015, In silico single cell dynamics of hepatitis B virus infection and clearance, Journal of Theoretical Biology, 366, 91, 10.1016/j.jtbi.2014.11.020 Shi, 2009, Molecular characteristics and stages of chronic hepatitis B virus infection, World Journal of Gastroenterology, 15, 3099, 10.3748/wjg.15.3099 Smolders, 2020, Review article: Clinical pharmacology of current and investigational hepatitis B virus therapies, Alimentary pharmacology & therapeutics, 51, 231, 10.1111/apt.15581 Sobol’, 1990, On sensitivity estimates for nonlinear mathematical models, Mathematics and Computers in Simulation, 2, 112 Sobol’, 2001, Global sensitivity indices for nonlinear mathematical models and their Monte Carlo estimates, Mathematics and Computers in Simulation, 55, 271, 10.1016/S0378-4754(00)00270-6 Tarao, 2019, Real impact of liver cirrhosis on the development of hepatocellular carcinoma in various liver diseases-meta-analytic assessment, Cancer medicine, 8, 1054, 10.1002/cam4.1998 Van Griensven, 2005, Global sensitivity analysis tool for the parameters of multi-variable catchment models, Journal of Hydrology, 324, 10 Wang, 2007, Propagation of HBV with spatial dependence, Mathematical Biosciences, 210, 78, 10.1016/j.mbs.2007.05.004 World Health Organization Wu, 2015, Natural history of chronic hepatitis B virus infection from infancy to adult life - the mechanism of inflammation triggering and long-term impacts, Journal of Biomedical Science, 22, 92, 10.1186/s12929-015-0199-y Wu, 2013, Sensitivity analysis of infectious disease models: Methods, advances and their application, Journal of The Royal Society Interface, 10, 20121018, 10.1098/rsif.2012.1018 Zhan, 2013, An efficient approach for global sensitivity analysis of hydrological model parameters, Environmental Modelling & Software, 41, 39, 10.1016/j.envsoft.2012.10.009 Zheng, 2006, Comparative study of parameter sensitivity analyses of the TCR-activated erk-MAPK signalling pathway, IEE Proceedings - Systems Biology, 153, 201, 10.1049/ip-syb:20050088 Zi, 2011, Sensitivity analysis approaches applied to systems biology models, IET Systems Biology, 5, 10.1049/iet-syb.2011.0015