Geophysical monitoring and reactive transport modeling of ureolytically-driven calcium carbonate precipitation

DOE: Strength through Science: Powering the 21st Century. 2000

Ferris GF, Phoenix V, Fujita Y, Smith RW: Kinetics of calcite precipitation induced by ureolytic bacteria at 10 to 20°C in artificial groundwater. Geochim Cosmochim Acta. 2004, 67 (8): 1701-1722.

Curti E: Coprecipitation of radionuclides with calcite: Estimation of partition coefficients based on a review of laboratory investigations and geochemical data. Appl Geochem. 1999, 14: 433-445. 10.1016/S0883-2927(98)00065-1.

Zachara JM, Cowan CE, Resch CT: Sorption of divalent metals on calcite. Geochim Cosmochim Acta. 1991, 55: 1549-1562. 10.1016/0016-7037(91)90127-Q.

Pingitore NE, Eastman MP: The coprecipitation of Sr2+ with calcite at 25 degree C and 1 atm. Geochim Cosmochim Acta. 1986, 50 (10): 2195-2203. 10.1016/0016-7037(86)90074-8.

Fujita Y, Redden GD, Ingram JC, Cortez MM, Ferris GF, Smith RW: Strontium incorporation into calcite generated by bacterial ureolysis. Geochim Cosmochim Acta. 2004, 68 (15): 3261-3270. 10.1016/j.gca.2003.12.018.

Mitchell AC, Ferris GF: The coprecipitation of Sr into calcite precipitates induced by bacterial ureolysis in artificial groundwater: Temperature and kinetic dependence. Geochim Cosmochim Acta. 2005, 69 (17): 4199-4210. 10.1016/j.gca.2005.03.014.

Fujita Y, Taylor JL, Wendt LM, Reed DW, Smith RW: Evaluating the Potential of Native Ureolytic Microbes To Remediate a 90Sr Contaminated Environment. Environ Sci Technol. 2010, 44: 7652-7658. 10.1021/es101752p.

Wood WW, Low WH: Aqueous geochemistry and diagenesis in the Eastern Snake River Plain aquifer system. Geol Soc Am bull. 1986, 97: 1456-1466. 10.1130/0016-7606(1986)97<1456:AGADIT>2.0.CO;2.

Whiffin VS, van Paassen LA, Harkes MP: Microbial Carbonate precipitation as a soil improvement technique. Geomicrobiol J. 2007, 24 (5): 417-423. 10.1080/01490450701436505.

Druckenmiller ML, Marote-Valer MM, Hill M: Investigation of Carbon Sequestration via Induced Calcite Formation in Natural Gas Well Brine. Energy & Fuels. 2006, 20: 172-179. 10.1021/ef050115u.

Fujita Y, Ferris GF, Lawson DR, Coldwell FS, Smith RW: Calcium Carbonate Precipitation by Ureolytic Subsurfface Bacteria. Geomicrobiol J. 2000, 17: 2-

DeJong JT, Fritzges MB, Nusslein K: Microbially induced cementation to control sand response to underained shear. J Geotech Geoenviron Eng. 2006, 132 (11): 1381-1392. 10.1061/(ASCE)1090-0241(2006)132:11(1381).

Warren LA, Maurice PA, Parmar N, Ferris GF: Microbially Mediated Calcium Carbonate Precipitation: Implications for Interpreting Calcite Precipitation and for Solid-Phase Capture of Inorganic Contaminants. Geomicrobiol J. 2001, 18 (1): 93-115. 10.1080/01490450151079833.

Fujita Y, Taylor JL, Gresham TL, Delwiche ME, Coldwell FS, McLing TL, Petzke LM, Smith RW: Stimulation Of Microbial Urea Hydrolysis In Groundwater To Enhance Calcite Precipitation. Environ Sci Technol. 2008, 42 (8): 3025-3032. 10.1021/es702643g.

Williams KH, Kemna A, Wilkins MJ, Druhan J, Arntzen E, N'Guessan L, Long P, Hubbard SS, Banfield J: Geophysical monitoring of coupled microbial and geochemical processes during stimulated subsurface bioremediation. Environ Sci Technol. 2009

Hubbard SS, Williams KH, Conrad ME, Faybishenko B, Peterson J, Chen J, Long P, Hazen T: Geophysical monitoring of hydrological and biogeochemical transformations associated with Cr(VI) bioremediation. Environ Sci Technol. 2008, 42: 3757-3765. 10.1021/es071702s.

Archie GE: The electrical resistivity log as an aid in determining some reservoir characteristics: Transactions of the American Institute of Mineral. Metallurgy and Petroleum Engineers. 1942, 146: 54-62.

Wong J: An electrochemical model of the induced-polarization phenomenon in disseminated sulfide ores. Geophysics. 1979, 44: 1245-1265. 10.1190/1.1441005.

Slater LD, Choi J, Wu Y: Electrical properties of iron-sand columns: Implications for induced polarization investigation and performance monitoring of iron-wall barriers. Geophysics. 2005, 70 (4): G87-G94. 10.1190/1.1990218.

Schwarz G: A theory of the low-frequency dielectric dispersion of colloidal particles in electrolyte solution. J Phys Chem. 1962, 66 (2636-2642):

Olhoeft GR: Low-frequency eletrical properties. Geophysics. 1985, 50 (12): 2492-2503. 10.1190/1.1441880.

Vaudelet P, Revil A, Schmutz M, Francesschi M, Begassat P: Induced polarization signatures of cations exhibiting differential sorption behaviors in saturated sands. Water Resour Res. 2011, 47 (W02526): 21-

Lesmes DP, Frye KM: Influence of pore fluid chemistry on the complex conductivity and induced polarization responses of Berea sandstone. J Geophys Res(B Solid Earth). 2001, 106 (B3): 4079-4090. 10.1029/2000JB900392.

Williams KH, Ntarlagiannis D, Slater LD, Dohnalkova A, Hubbard SS, banfield JF: Geophysical imaging of stimulated microbial biomineralization. Environ Sci Technol. 2005, 39 (19): 7592-7600. 10.1021/es0504035.

Atekwana EA, D. Dale Werkema J, Duris JW, Rossbach S, Atekwana EA, Sauck WA, Cassidy DP, Means J, Legal FD: In-situ apparent conductivity measurements and microbial population distribution at a hydrocarbon-contaminated site. Geophysics. 2004, 69 (1): 56-63. 10.1190/1.1649375.

Ntarlagiannis D, Williams KH, Slater L, Hubbard SS: Low-frequency electrical response to microbial induced sulfide precipitation. J Geophys Res (G Biogeosci). 2005, 110: G02009-

Lane JWJ, Day-Lewis FD, Casey CC: Geophysical monitoring of a field-scale biostimulation pilot project. Ground water. 2006, 44 (3): 430-443. 10.1111/j.1745-6584.2005.00134.x.

Wu Y, Hubbard SS, Williams KH, Ajo-Franklin JB: On the complex conductivity signatures of calcite precipitation. J Geophys Res. 2010, 115: G00G04-

Slater L, Ntarlagiannis D, Personna YR, Hubbard S: Pore-scale spectral induced polarization (SIP) signatures associated with FeS biomineral transformations. Geophys Res Lett. 2007, 34: L21404-

Personna YR, Ntarlagiannis D, Slater L, Yee N, O'Brien M, Hubbard S: Spectral induced polarization and electrodic potential monitoring of microbially-mediated iron sulfide transformations. J Geophys Res (G Biogeosci). 2008, 113: G02020-

Davis CA, Pyrak-Nolte LJ, Atekwana EA, Werkema DD, Haugen ME: Microbial-induced heterogeneity in the acoustic properties of porous media. Geophys Res Lett. 2009, 36: L21405-

Dvorkin J, Berryman J, Nur A: Elastic moduli of cemented sphere packs. Mech Mater. 1999, 31: 461-499. 10.1016/S0167-6636(99)00009-5.

Pride S, Berryman J: Linear dynamics of double-porosity dual-permeability materials. I. Governing equations and acoustic attenuation. Phys Rev E. 2003, 68 (3):

Xu T, Spycher NF, Sonnenthal E, Zhang GLZ, Pruess K: TOUGHREACT Version 2.0: A simulator for subsurface reactive transport under non-isothermal multiphase flow conditions. Computers and Geosciences. 2011, 37 (6): 763-774. 10.1016/j.cageo.2010.10.007.

Spanne P, Thovert JF, Jacquin CJ, Lindquist WB, Johes KW, Adler Pm: Synchrotron Computed Microtomography of Porous Media: Topology and Transports. Phys Rev Lett. 1994, 73: 2001-2004. 10.1103/PhysRevLett.73.2001.

Stock S: Microcomputed Tomography: Methodology and Application. 2009, CRS Press: Boca Raton, FL

Noiriel C, Bernard D, Gouze P, Thibault X: Hydraulic properties and microgeometry evolution in the course of limestone dissolution by acidic water. Oil Gas Sci Technol. 2005, 60 (1-2): 177-192.

Englert A, Hubbard SS, Williams KH, Li L, Steefel CI: Feedbacks between hydrological heterogeneity and bioremediation induced biogeochemical transformations. Environ Sci Technol. 2009, 43 (5197-5204):

Winfield KA: Spatial Variability of Sedimentary Interbed Properties Near the Idaho Nuclear Technology and Engineering Center at the Idaho National Engineering and Environmental Laboratory, Idaho. 2003, Idaho Falls, Idaho

Bartholomay RC: Mineralogical correlation of surficial sediment from area drainages with selected sedimentary interbeds at the Idaho Inational Engineering Laboratory, Idaho. 1990, Water-Resources Investigations Report 90-4147; Idaho Falls, ID

Oliveira IB, Demond AH, Salehzadeh A: Packing of sands for the production of homogeneous porous media. Soil Sci Soc Am J. 1996, 60 (1): 49-53. 10.2136/sssaj1996.03615995006000010010x.

Lunau M, Kemke A, Walther K, Martens-Habbena W, Simon M: Determining adherence of cells to sediment particles. Environ Microbiol. 2005

Palandri J, Kharaka YK: A compilation of rate parameters of water-mineral interaction kinetics for application to geochemical modeling. 2004, US Geol. Surv, 64-

Doherty J: PEST: Model-Independent Parameter Estimation. 2008, Watermark Numerical Computing: Brisbane, Australia

Fidaleo M, Lavecchia R: Kinetic study of enzymatic urea hydrolysis in the pH range 4-9. Chem Bioche Eng Q. 2003, 4: 311-318.

Barkouki TH, Martinez BC, Mortensen BM, Weathers TS, DeJong JT, Ginn TR, Spycher NF, Smith RW, Fujita Y: Forward and Inverse Bio-Geochemical Modeling of Microbially Induced Calcite Precipitation in Half-Meter Column Experiments. Transport in Porous Media. 2011

Lasaga AC: Kinetic Theory in the Earth Sciences. 1998, Princeton University Press, 811-

Maggi F, Gu C, Riley WJ, Hornberger GM, Venterea RT, Xu T, Spycher NF, Steefel CI, Miller NL, Oldenburg CM: A mechanistic treatment of the dominant soil nitrogen cycling processes: Model development, testing, and application. J Geophys Res (G Biogeosci). 2008, 113: G02016-

Baker LL, Strawn DG, Smith RW: Cation Exchange on Vadose Zone Research Park Subsurface Sediment, Idaho National Laboratory. Vadose Zone J. 2010, 9: 1-10. 10.2136/vzj2009.0149.

Sposito G: The Gapon and the Vanselow selectivity coefficients. Soil Sci Soc Am J. 1977, 41: 1205-1206. 10.2136/sssaj1977.03615995004100060040x.

Ntarlagiannis D, Yee N, Slater L: On the low-frequency electrical polarization of bacterial cells in sands. Geophys Res Lett. 2005, 32: L24402-

Wong J: An electrochemical model of the induced-polarization phenomenon in disseminated sulfide ores. Geophysics. 1979, 44 (7): 1245-1265. 10.1190/1.1441005.

Zhang C, Johnson TC, Slater L, Redden GD: Spectral induced polarization signatures of hydroxyl adsorption in porous media. 2010, American Geophysical Union, San Francisco, Ca, Abstract # NS31B-1398

Chaperon S, Sauve S: Toxicity interaction of metals (Ag, Cu, Hg, Zn) to urease and dehydrogenase activities in soils. Soil Biol Biochem. 2007, 39: 2329-2338. 10.1016/j.soilbio.2007.04.004.