Genotypic diversity of Mycobacterium tuberculosis in Buenos Aires, Argentina

Infection, Genetics and Evolution - Tập 62 - Trang 1-7 - 2018
Johana Monteserin1,2, Roxana Paul1, Elida Gravina3, Ana Reniero4, Teresa Hernandez5, Eduardo Mazzeo1, Ana Togneri6, Norberto Simboli1, Beatriz López1, David Couvin7, Nalin Rastogi7, Viviana Ritacco1,2
1Instituto Nacional de Enfermedades Infecciosas INEI-ANLIS, Av. Vélez Sarsfield 563, Ciudad Autónoma de Buenos Aires C1282AFF, Argentina
2Consejo Nacional de Investigaciones Científicas y Técnicas CONICET, Godoy Cruz 2290, Ciudad Autónoma de Buenos Aires C1425FQB, Argentina
3Hospital Interzonal General de Agudos “Dr. Diego Paroissien”, Brig. Gral. Juan Manuel de Rosas 6000, Isidro Casanova B1754FWS, Buenos Aires, Argentina
4Hospital Central de San Isidro, Av. Santa Fe 431, Acassuso B1641, Buenos Aires, Argentina
5Centro de Zooantroponosis de La Matanza, Peribebuy 4770, San Justo B1754GOJ, Buenos Aires, Argentina
6Hospital Interzonal de Agudos Evita, Rio de Janeiro 1910, Lanús Oeste B1824DMT, Buenos Aires, Argentina
7WHO Supranational TB Reference Laboratory, Institut Pasteur de la Guadeloupe, Morne Joliviere, Abymes BP 484 97183, Cedex, France

Tài liệu tham khảo

Abadia, 2010, Resolving lineage assignation on Mycobacterium tuberculosis clinical isolates classified by spoligotyping with a new high-throughput 3R SNPs based method, Infect. Genet. Evol., 10, 1066, 10.1016/j.meegid.2010.07.006 Aita, 1996, Hospital transmission of multidrug-resistant Mycobacterium tuberculosis in Rosario, Argentina, Medicina (Mex.), 56, 48 Allix-Béguec, 2008, Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates, J. Clin. Microbiol., 46, 2692, 10.1128/JCM.00540-08 Aristimuño, 2006, Molecular characterisation of Mycobacterium tuberculosis isolates in the first national survey of anti-tuberculosis drug resistance from Venezuela, BMC Microbiol., 6, 90, 10.1186/1471-2180-6-90 Barbosa, 2012, Tuberculosis caused by RDRio Mycobacterium tuberculosis is not associated with differential clinical features, Int. J. Tuberc. Lung Dis., 16, 1377, 10.5588/ijtld.11.0709 Brudey, 2006, Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology, BMC Microbiol., 6, 23, 10.1186/1471-2180-6-23 Couvin, 2017, SpolSimilaritySearch - a web tool to compare and search similarities between spoligotypes of Mycobacterium tuberculosis complex, Tuberc. Edinb. Scotl., 105, 49, 10.1016/j.tube.2017.04.007 Dalla Costa, 2013, Mycobacterium tuberculosis of the RDRio genotype is the predominant cause of tuberculosis and associated with multidrug resistance in Porto Alegre City, South Brazil, J. Clin. Microbiol., 51, 1071, 10.1128/JCM.01511-12 David, 2012, Implication of the RD(Rio) Mycobacterium tuberculosis sublineage in multidrug resistant tuberculosis in Portugal, Infect. Genet. Evol., 12, 1362, 10.1016/j.meegid.2012.04.021 Demay, 2012, SITVITWEB – a publicly available international multimarker database for studying Mycobacterium tuberculosis genetic diversity and molecular epidemiology, Infect. Genet. Evol., Special Issue on Molecular evolution, epidemiology and pathogenesis of Mycobacterium tuberculosis and other mycobacteria, 12, 755 Gagneux, 2006, Variable host-pathogen compatibility in Mycobacterium tuberculosis, Proc. Natl. Acad. Sci. U. S. A., 103, 2869, 10.1073/pnas.0511240103 Gibson, 2008, Application of sensitive and specific molecular methods to uncover global dissemination of the major RDRio sublineage of the Latin American-Mediterranean Mycobacterium tuberculosis spoligotype family, J. Clin. Microbiol., 46, 1259, 10.1128/JCM.02231-07 Hirsh, 2004, Stable association between strains of Mycobacterium tuberculosis and their human host populations, Proc. Natl. Acad. Sci. U. S. A., 101, 4871, 10.1073/pnas.0305627101 Jagielski, 2016, Methodological and clinical aspects of the molecular epidemiology of Mycobacterium tuberculosis and other mycobacteria, Clin. Microbiol. Rev., 29, 239, 10.1128/CMR.00055-15 Kamerbeek, 1997, Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology, J. Clin. Microbiol., 35, 907, 10.1128/JCM.35.4.907-914.1997 Kato-Maeda, 2011, Strain classification of Mycobacterium tuberculosis: congruence between large sequence polymorphisms and spoligotypes, Int. J. Tuberc. Lung Dis., 15, 131 Lagos, 2016, Analysis of Mycobacterium tuberculosis genotypic lineage distribution in Chile and neighboring countries, PLoS One, 11, 10.1371/journal.pone.0160434 Lazzarini, 2007, Discovery of a novel Mycobacterium tuberculosis lineage that is a major cause of tuberculosis in Rio de Janeiro, Brazil, J. Clin. Microbiol., 45, 3891, 10.1128/JCM.01394-07 Millet, 2011, Finer snapshot of circulating Mycobacterium tuberculosis genotypes in Guadeloupe, Martinique, and French Guiana, J. Clin. Microbiol., 49, 2685, 10.1128/JCM.00708-11 Monteserin, 2013, Genotypes of Mycobacterium tuberculosis in patients at risk of drug resistance in Bolivia, Infect. Genet. Evol., 17, 195, 10.1016/j.meegid.2013.04.010 Monteserin, 2017, Relation of Mycobacterium tuberculosis mutations at katG315 and inhA-15 with drug resistance profile, genetic background, and clustering in Argentina, Diagn. Microbiol. Infect. Dis., 10.1016/j.diagmicrobio.2017.07.010 Palmero, 2006, Multidrug-resistant tuberculosis in AIDS patients at the beginning of the millennium, Medicina (Mex.), 66, 399 Perezill, 2011, Modelling the feasibility of bovine tuberculosis eradication in Argentina, Rev. Sci. Tech. Int. Off. Epizoot., 30, 635, 10.20506/rst.30.2.2056 Rasoahanitralisoa, 2017, Evaluation of spoligotyping, SNPs and customised MIRU-VNTR combination for genotyping Mycobacterium tuberculosis clinical isolates in Madagascar, PLoS One, 12, 10.1371/journal.pone.0186088 Realpe, 2014, Population structure among Mycobacterium tuberculosis isolates from pulmonary tuberculosis patients in Colombia, PLoS One, 9, 10.1371/journal.pone.0093848 Reyes, 2012, IS-seq: a novel high throughput survey of in vivo IS6110 transposition in multiple Mycobacterium tuberculosis genomes, BMC Genomics, 13, 249, 10.1186/1471-2164-13-249 Ritacco, 2008, Mycobacterium tuberculosis strains of the Beijing genotype are rarely observed in tuberculosis patients in South America, Mem. Inst. Oswaldo Cruz, 103, 489, 10.1590/S0074-02762008000500014 Ritacco, 2012, HIV infection and geographically bound transmission of drug-resistant tuberculosis, Argentina, Emerg. Infect. Dis., 18, 1802, 10.3201/eid1811.120126 Sola, 2001, Mycobacterium tuberculosis phylogeny reconstruction based on combined numerical analysis with IS1081, IS6110, VNTR, and DR-based spoligotyping suggests the existence of two new phylogeographical clades, J. Mol. Evol., 53, 680, 10.1007/s002390010255 Streit, 2015, Finer characterization of Mycobacterium tuberculosis using spoligotyping and 15-loci MIRU-VNTRs reveals phylogeographical specificities of isolates circulating in Guyana and Suriname, Infect. Genet. Evol., 30, 114, 10.1016/j.meegid.2014.12.015 Supply, 2006, Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis, J. Clin. Microbiol., 44, 4498, 10.1128/JCM.01392-06 Von Groll, 2010, Fitness study of the RDRio lineage and Latin American-Mediterranean family of Mycobacterium tuberculosis in the city of Rio Grande, Brazil, FEMS Immunol. Med. Microbiol., 58, 119, 10.1111/j.1574-695X.2009.00611.x Weisenberg, 2012, Distinct clinical and epidemiological features of tuberculosis in New York City caused by the RD(Rio) Mycobacterium tuberculosis sublineage, Infect. Genet. Evol., 12, 664, 10.1016/j.meegid.2011.07.018 WHO, 2009