Genomics and genome editing techniques of crickets, an emerging model insect for biology and food science

Otte, 1984, African crickets (Gryllidae). 6. The genus Gryllus and some related genera (Gryllinae, Gryllini), Proc Acad Nat Sci Philadelphia, 98 Mito, 2011, The advent of RNA interference in entomology, Entomol Sci, 14, 1, 10.1111/j.1479-8298.2010.00408.x Horch, 2017, vol 376, 1 Donoughe, 2016, Embryonic development of the cricket Gryllus bimaculatus, Dev Biol, 411, 140, 10.1016/j.ydbio.2015.04.009 Nakamura, 2010, Imaging of transgenic cricket embryos reveals cell movements consistent with a syncytial patterning mechanism, Curr Biol, 20, 1641, 10.1016/j.cub.2010.07.044 Donoughe, 2021, Local density determines nuclear movements during syncytial blastoderm formation in a cricket, bioRxiv Whittle, 2021, Evolutionary dynamics of sex-biased genes expressed in cricket brains and gonads, J Evol Biol, 34, 1188, 10.1111/jeb.13889 Zeng, 2013, Developmental gene discovery in a hemimetabolous insect: de novo assembly and annotation of a transcriptome for the cricket Gryllus bimaculatus, PLoS One, 8 Fisher, 2018, De novo assembly of a transcriptome for the cricket Gryllus bimaculatus prothoracic ganglion: an invertebrate model for investigating adult central nervous system compensatory plasticity, PLoS One, 13, 10.1371/journal.pone.0199070 Ylla, 2021, Insights into the genomic evolution of insects from cricket genomes, Commun Biol, 4, 1, 10.1038/s42003-021-02197-9 Watanabe, 2012, Non-transgenic genome modifications in a hemimetabolous insect using zinc-finger and TAL effector nucleases, Nat Commun, 3, 1, 10.1038/ncomms2020 Matsuoka, 2021, Establishment of CRISPR/Cas9-based knock-in in a hemimetabolous insect: targeted gene tagging in the cricket Gryllus bimaculatus, bioRxiv Kulkarni, 2019, The cricket Gryllus bimaculatus: techniques for quantitative and functional genetic analyses of cricket biology, Evo-Devo, 183 Van Huis, 2013 Yuan, 2021, The evolutionary patterns of genome size in Ensifera (Insecta: Orthoptera), Front Genet, 12, 10.3389/fgene.2021.693541 Gregory, 2002, Genome size and developmental complexity, Genetica, 115, 131, 10.1023/A:1016032400147 Petrov, 2001, Evolution of genome size: new approaches to an old problem, Trends Genet, 17, 23, 10.1016/S0168-9525(00)02157-0 Kidwell, 2002, Transposable elements and the evolution of genome size in eukaryotes, Genetica, 115, 49, 10.1023/A:1016072014259 Li, 2018, Multiple large-scale gene and genome duplications during the evolution of hexapods, Proc Natl Acad Sci U S A, 115, 4713, 10.1073/pnas.1710791115 Wang, 2014, The locust genome provides insight into swarm formation and long-distance flight, Nat Commun, 5, 1 Verlinden, 2020, First draft genome assembly of the desert locust, Schistocerca gregaria, F1000Research, 9, 10.12688/f1000research.25148.1 Shaw, 2009, Genomic linkage of male song and female acoustic preference QTL underlying a rapid species radiation, Proc Natl Acad Sci U S A, 106, 9737, 10.1073/pnas.0900229106 Chénais, 2012, The impact of transposable elements on eukaryotic genomes: from genome size increase to genetic adaptation to stressful environments, Gene, 509, 7, 10.1016/j.gene.2012.07.042 Alexander, 1961, Aggressiveness, territoriality, and sexual behavior in field crickets (Orthoptera: Gryllidae), Behaviour, 17, 130, 10.1163/156853961X00042 Lin, 2021, Wing movements underlying sound production in calling, rivalry, and courtship songs of the cricket Gryllus bimaculatus (DeGeer), J Insect Physiol, 134, 10.1016/j.jinsphys.2021.104299 Lu, 2012, ppk23-dependent chemosensory functions contribute to courtship behavior in Drosophila melanogaster, PLoS Genet, 8, 10.1371/journal.pgen.1002587 Kulski, 2016, Next-generation sequencing—an overview of the history, tools, and “Omic” applications Kchouk, 2017, Generations of sequencing technologies: from first to next generation, Biol Med, 9, 10.4172/0974-8369.1000395 Russell, 2017, Non-model model organisms, BMC Biol, 15, 1, 10.1186/s12915-017-0391-5 Gaj, 2013, ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering, Trends Biotechnol, 31, 397, 10.1016/j.tibtech.2013.04.004 Branzei, 2008, Regulation of DNA repair throughout the cell cycle, Nat Rev Mol Cell Biol, 9, 297, 10.1038/nrm2351 Awata, 2015, Knockout crickets for the study of learning and memory: dopamine receptor Dop1 mediates aversive but not appetitive reinforcement in crickets, Sci Rep, 5, 1, 10.1038/srep15885 Li, 2016, CRISPR/Cas9 in locusts: successful establishment of an olfactory deficiency line by targeting the mutagenesis of an odorant receptor co-receptor (Orco), Insect Biochem Mol Biol, 79, 27, 10.1016/j.ibmb.2016.10.003 Guo, 2020, 4-Vinylanisole is an aggregation pheromone in locusts, Nature, 584, 584, 10.1038/s41586-020-2610-4 Taning, 2017, CRISPR/Cas9 in insects: applications, best practices and biosafety concerns, J Insect Physiol, 98, 245, 10.1016/j.jinsphys.2017.01.007 Gratz, 2014, Highly specific and efficient CRISPR/Cas9-catalyzed homology-directed repair in Drosophila, Genetics, 196, 961, 10.1534/genetics.113.160713 Kistler, 2015, Genome engineering with CRISPR-Cas9 in the mosquito Aedes aegypti, Cell Rep, 11, 51, 10.1016/j.celrep.2015.03.009 Hammond, 2016, A CRISPR-Cas9 gene drive system targeting female reproduction in the malaria mosquito vector Anopheles gambiae, Nat Biotechnol, 34, 78, 10.1038/nbt.3439 Gilles, 2015, Efficient CRISPR-mediated gene targeting and transgene replacement in the beetle Tribolium castaneum, Development, 142, 2832 Aumann, 2018, Highly efficient genome editing by homology-directed repair using Cas9 protein in Ceratitis capitata, Insect Biochem Mol Biol, 101, 85, 10.1016/j.ibmb.2018.08.004 Auer, 2014, Highly efficient CRISPR/Cas9-mediated knock-in in zebrafish by homology-independent DNA repair, Genome Res, 24, 142, 10.1101/gr.161638.113 Schmid-Burgk, 2016, CRISPaint allows modular base-specific gene tagging using a ligase-4-dependent mechanism, Nat Commun, 7, 1, 10.1038/ncomms12338 Bosch, 2020, Gene knock-ins in Drosophila using homology-independent insertion of universal donor plasmids, Genetics, 214, 75, 10.1534/genetics.119.302819 Barry, 2019, Injecting Gryllus bimaculatus eggs, J Vis Exp, 150 Kotwica-Rolinska, 2019, CRISPR/Cas9 genome editing introduction and optimization in the non-model insect Pyrrhocoris apterus, Front Physiol, 10, 10.3389/fphys.2019.00891 Chaverra-Rodriguez, 2018, Targeted delivery of CRISPR-Cas9 ribonucleoprotein into arthropod ovaries for heritable germline gene editing, Nat Commun, 9, 1, 10.1038/s41467-018-05425-9 Macias, 2020, Cas9-mediated gene-editing in the malaria mosquito Anopheles stephensi by ReMOT Control, G3: Genes Genom Genet, 10, 1353, 10.1534/g3.120.401133 Heu, 2020, CRISPR-Cas9-based genome editing in the silverleaf whitefly (Bemisia tabaci), CRISPR J, 3, 89, 10.1089/crispr.2019.0067 Shirai, 2020, Mutations in cardinal are responsible for the red-1 and peach eye color mutants of the red flour beetle Tribolium castaneum, Biochem Biophys Res Commun, 529, 372, 10.1016/j.bbrc.2020.05.214 Chaverra-Rodriguez, 2020, Germline mutagenesis of Nasonia vitripennis through ovarian delivery of CRISPR‐Cas9 ribonucleoprotein, Insect Mol Biol, 29, 569, 10.1111/imb.12663 Sharma, 2022, Cas9-mediated gene editing in the black-legged tick, Ixodes scapularis, by embryo injection and ReMOT Control, iScience, 10.1016/j.isci.2022.103781 Aird, 2018, Increasing Cas9-mediated homology-directed repair efficiency through covalent tethering of DNA repair template, Commun Biol, 1, 1, 10.1038/s42003-018-0054-2 Blankers, 2018, The genomic architecture of a rapid island radiation: recombination rate variation, chromosome structure, and genome assembly of the Hawaiian cricket Laupala, Genetics, 209, 1329, 10.1534/genetics.118.300894 Kataoka, 2020, The draft genome dataset of the Asian cricket Teleogryllus occipitalis for molecular research toward entomophagy, Front Genet, 11, 10.3389/fgene.2020.00470 Pascoal, 2020, Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild, Evol Lett, 4, 19, 10.1002/evl3.148 Oppert, 2020, Transcriptome analysis of life stages of the house cricket, Acheta domesticus, to improve insect crop production, Sci Rep, 10, 1, 10.1038/s41598-020-59087-z Drinnenberg, 2014, Recurrent loss of CenH3 is associated with independent transitions to holocentricity in insects, eLife, 3, 10.7554/eLife.03676 Braswell, 2006, Identification and comparative analysis of accessory gland proteins in Orthoptera, Genome, 49, 1069, 10.1139/g06-061 Reynolds, 2009, Embryonic diapause highlighted by differential expression of mRNAs for ecdysteroidogenesis, transcription and lipid sparing in the cricket Allonemobius socius, J Exp Biol, 212, 2075, 10.1242/jeb.027367 Satoh, 2019, Circatidal gene expression in the mangrove cricket Apteronemobius asahinai, Sci Rep, 9, 1, 10.1038/s41598-019-40197-2 Takekata, 2020, Possible biological processes controlled by the circatidal clock in the mangrove cricket inferred from transcriptome analysis, Biol Rhythm Res, 1 Shimizu, 2018, Cell cycle regulator, small silencing RNA, and segmentation patterning gene expression in relation to embryonic diapause in the band-legged ground cricket, Insect Biochem Mol Biol, 102, 75, 10.1016/j.ibmb.2018.09.012 Pauchet, 2015, What’s in the gift? Towards a molecular dissection of nuptial feeding in a cricket, PLoS One, 10, 10.1371/journal.pone.0140191 Palacios-Gimenez, 2018, Satellite DNAs are conserved and differentially transcribed among Gryllus cricket species, DNA Res, 25, 137, 10.1093/dnares/dsx044 Bando, 2013, Analysis of RNA-Seq data reveals involvement of JAK/STAT signalling during leg regeneration in the cricket Gryllus bimaculatus, Development, 140, 959, 10.1242/dev.084590 Hussain, 2020, Insights into the Gryllus bimaculatus immune-related transcriptomic profiling to combat naturally invading pathogens, J Fungi, 6, 10.3390/jof6040232 Pechmann, 2021, Striking parallels between dorsoventral patterning in Drosophila and Gryllus reveal a complex evolutionary history behind a model gene regulatory network, eLife, 10, 10.7554/eLife.68287 Nanoth Vellichirammal, 2014, De novo transcriptome assembly from fat body and flight muscles transcripts to identify morph-specific gene expression profiles in Gryllus firmus, PLoS One, 9, 10.1371/journal.pone.0082129 Andres, 2013, Patterns of transcriptome divergence in the male accessory gland of two closely related species of field crickets, Genetics, 193, 501, 10.1534/genetics.112.142299 Des Marteaux, 2017, Effects of cold-acclimation on gene expression in Fall field cricket (Gryllus pennsylvanicus) ionoregulatory tissues, BMC Genomics, 18, 10.1186/s12864-017-3711-9 Berdan, 2016, A genes eye view of ontogeny: de novo assembly and profiling of the Gryllus rubens transcriptome, Mol Ecol Resour, 16, 1478, 10.1111/1755-0998.12530 Toxopeus, 2019, How crickets become freeze tolerant: the transcriptomic underpinnings of acclimation in Gryllus veletis, Comp Biochem Physiol Part D Genomics Proteomics, 29, 55, 10.1016/j.cbd.2018.10.007 Blankers, 2018, The genetics of a behavioral speciation phenotype in an island system, Genes (Basel), 9, 10.3390/genes9070346 Danley, 2007, A cricket Gene Index: a genomic resource for studying neurobiology, speciation, and molecular evolution, BMC Genomics, 8, 10.1186/1471-2164-8-109 Kasumovic, 2016, Australian black field crickets show changes in neural gene expression associated with socially-induced morphological, life-history, and behavioral plasticity, BMC Genomics, 17, 10.1186/s12864-016-3119-y Lee, 2018, De novo assembly and functional annotation of the emma field cricket (Teleogryllus emma) transcriptome, J Asia Pac Entomol, 22 Pascoal, 2016, Rapid evolution and gene expression: a rapidly-evolving Mendelian trait that silences field crickets has widespread effects on mRNA and protein expression, J Evol Biol, 29, 10.1111/jeb.12865 Simmons, 2013, Sperm and seminal fluid proteomes of the field cricket Teleogryllus oceanicus: identification of novel proteins transferred to females at mating, Insect Mol Biol, 22, 115, 10.1111/imb.12007 Bailey, 2013, Tissue-specific transcriptomics in the field cricket Teleogryllus oceanicus, G3: Genes Genom Genet, 3, 225, 10.1534/g3.112.004341 Rayner, 2019, Release from intralocus sexual conflict? Evolved loss of a male sexual trait demasculinizes female gene expression, Proc Biol Sci, 286 Satoh, 2021, De novo assembly and annotation of the mangrove cricket genome, BMC Res Notes, 14, 1, 10.1186/s13104-021-05798-z