Genomic Correlates of Atherosclerosis in Ancient Humans

Global Heart - Tập 9 - Trang 203-209
Albert Zink1, L. Samuel Wann2, Randall C. Thompson3, Andreas Keller4, Frank Maixner1, Adel H. Allam5, Caleb E. Finch6, Bruno Frohlich7, Hillard Kaplan8, Guido P. Lombardi9, M. Linda Sutherland10, James D. Sutherland11, Lucia Watson12, Samantha L. Cox13, Michael I. Miyamoto14, Jagat Narula15, Alexandre F.R. Stewart16, Gregory S. Thomas17,18, Johannes Krause19
1Institute for Mummies and the Iceman, European Academy of Bolzano/Bozen (EURAC), Bolzano/Bozen, Italy
2Cardiovascular Physicians, Columbia St. Mary's Healthcare, Milwaukee, WI, USA
3Saint Luke's Mid America Heart Institute/University of Missouri-Kansas City, Kansas City, MO, USA
4Department of Clinical Bioinformatics, Saarland University, University Hospital, Saarbrücken, Germany
5Al-Azhar University, Cairo, Egypt
6Davis School of Gerontology, University of Southern California, Los Angeles, CA, USA
7National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
8Department of Anthropology, University of New Mexico, Albuquerque, NM, USA
9Universidad Peruana Cayetano Heredia, Lima, Peru
10Newport Diagnostic Center, Newport Beach, CA, USA
11Saddleback Memorial Medical Center, Laguna Hills, CA, USA
12Universidad Nacional Autónoma de México, Mexico City, Mexico
13Department of Archeology, University of Cambridge, Cambridge, United Kingdom
14Mission Heritage Medical Group, St. Joseph Heritage Health, Mission Viejo, CA, USA
15Zena and Michael A. Wiener Cardiovascular Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA
16John and Jennifer Ruddy Canadian Cardiovascular Genetics Centre, University of Ottawa Heart Institute, Ottawa, Ontario, Canada
17MemorialCare Heart & Vascular Institute, Long Beach Memorial, Long Beach, CA, USA
18University of California, Irvine, Irvine, CA, USA.
19Institute of Archaeological Sciences, University of Tubingen, Tubingen, Germany

Tài liệu tham khảo

Pauling, 1963, Chemical paleogenetics: molecular “restoration studies” of extinct forms of life, Acta Chem Scand, 17, 9, 10.3891/acta.chem.scand.17s-0009 Higuchi, 1984, DNA sequences from the quagga, an extinct member of the horse family, Nature, 312, 282, 10.1038/312282a0 Paabo, 1985, Molecular cloning of Ancient Egyptian mummy DNA, Nature, 314, 644, 10.1038/314644a0 Skoglund, 2010, Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe, Science, 336, 466, 10.1126/science.1216304 Prüfer, 2014, The complete genome sequence of a Neanderthal from the Altai Mountains, Nature, 505, 43, 10.1038/nature12886 Brandt, 2013, Ancient DNA reveals key stages in the formation of central European mitochondrial genetic diversity, Science, 342, 257, 10.1126/science.1241844 Sankararaman, 2014, The genomic landscape of Neanderthal ancestry in present-day humans, Nature, 507, 354, 10.1038/nature12961 Rasmussen, 2010, Ancient human genome sequence of an extinct Palaeo-Eskimo, Nature, 463, 757, 10.1038/nature08835 Zink, 2005, Molecular identification of human tuberculosis in recent and historic bone tissue samples: the role of molecular techniques for the study of historic tuberculosis, Am J Phys Anthropol, 126, 32, 10.1002/ajpa.10409 Hawass, 2010, Ancestry and pathology in King Tutankhamun's family, JAMA, 303, 638, 10.1001/jama.2010.121 Keller, 2012, New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing, Nat Commun, 3, 698, 10.1038/ncomms1701 Schuenemann, 2013, Genome-wide comparison of medieval and modern Mycobacterium leprae, Science, 341, 179, 10.1126/science.1238286 Bos, 2011, A draft genome of Yersinia pestis from victims of the Black Death, Nature, 478, 506, 10.1038/nature10549 Wagner, 2014, Yersinia pestis and the Plague of Justinian 541-543 AD: a genomic analysis, Lancet Infect Dis, 14, 319, 10.1016/S1473-3099(13)70323-2 Lindahl, 1993, Instability and decay of the primary structure of DNA, Nature, 362, 709, 10.1038/362709a0 Pääbo, 2004, Genetic analyses from ancient DNA, Annu Rev Genet, 38, 645, 10.1146/annurev.genet.37.110801.143214 Collins, 2002, The survival of organic matter in bone: a review, Archaeometry, 44, 383, 10.1111/1475-4754.t01-1-00071 Orlando, 2013, Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse, Nature, 499, 74, 10.1038/nature12323 Meyer, 2014, A mitochondrial genome sequence of a hominin from Sima de los Huesos, Nature, 505, 403, 10.1038/nature12788 Cooper, 2000, Ancient DNA: do it right or not at all, Science, 289, 1139, 10.1126/science.289.5482.1139b Hofreiter, 2001, Ancient DNA, Nat Rev Genet, 2, 353, 10.1038/35072071 Krause, 2010, A complete mtDNA genome of an early modern human from Kostenki, Russia, Curr Biol, 20, 231, 10.1016/j.cub.2009.11.068 Stoneking, 2011, Learning about human population history from ancient and modern genomes, Nat Rev Genet, 12, 603, 10.1038/nrg3029 Collins, 2009, Is amino acid racemization a useful tool for screening for ancient DNA in bone?, Proc Biol Sci, 276, 2971, 10.1098/rspb.2009.0563 McPherson, 2007, A common allele on chromosome 9 associated with coronary heart disease, Science, 316, 1488, 10.1126/science.1142447 Luke, 2009, Polymorphisms associated with both noncardioembolic stroke and coronary heart disease: Vienna stroke registry, Cerebrovasc Dis, 28, 499, 10.1159/000236914 Roberts, 2013, Genomics in cardiovascular disease, J Am Coll Cardiol, 61, 2029, 10.1016/j.jacc.2012.12.054 Czermack J. Description and microscopic finding of two Egyptian mummies. Meeting of the Academy of Science (Beschreibung und mikroskopische Untersuchung Zweir Agyptischer Mumien, S. B. Akad. Wiss. Wien) 1853;9:27. Allam, 2009, Computed tomographic assessment of atherosclerosis in ancient Egyptian mummies, JAMA, 302, 2091, 10.1001/jama.2009.1641 Thompson, 2013, Atherosclerosis across 4000 years of human history: the Horus study of four ancient populations, Lancet, 381, 1211, 10.1016/S0140-6736(13)60598-X Gaber, 1998, Man from the Hauslabjoch, Exp Gerontol, 33, 655, 10.1016/S0531-5565(98)00048-5 Barfield, 1992 Spindler, 2000 Janko, 2012, Preservation of 5300 year old red blood cells in the Iceman, J R Soc Interface, 9, 2581, 10.1098/rsif.2012.0174 Gostner, 2011, New radiological insights into the life and death of the Tyrolean Iceman, J Archaeol Sci, 38, 3425, 10.1016/j.jas.2011.08.003 Müller, 2003, Origin and migration of the Alpine Iceman, Science, 302, 862, 10.1126/science.1089837 Dickson, 2000, The omnivorous Tyrolean Iceman: colon contents (meat, cereals, pollen, moss and whipworm) and stable isotope analyses, Philos Trans R Soc Lond B Biol Sci, 355, 1843, 10.1098/rstb.2000.0739 Oeggl, 2007, The reconstruction of the last itinerary of “Ötzi,” the Neolithic Iceman, by pollen analyses from sequentially sampled gut extracts, Quaternary Sci Rev, 26, 853, 10.1016/j.quascirev.2006.12.007 Gostner, 2002, Report of radiological-forensic findings on the iceman, J Archaeol Sci, 29, 323, 10.1006/jasc.2002.0824 Murphy, 2003, The Iceman: discovery and imaging, Radiology, 226, 614, 10.1148/radiol.2263020338 Pernter, 2007, Radiologic proof for the Iceman's cause of death (ca 5.300 BP), J Archaeological Sci, 34, 1784, 10.1016/j.jas.2006.12.019 Maixner, 2013, Paleoproteomic study of the Iceman's brain tissue, Cell Mol Life Sci, 70, 3709, 10.1007/s00018-013-1360-y Handt, 1994, Molecular genetic analyses of the Tyrolean Ice Man, Science, 264, 1775, 10.1126/science.8209259 Ermini, 2008, Complete mitochondrial genome sequence of the Tyrolean Iceman, Curr Biol, 18, 1687, 10.1016/j.cub.2008.09.028 Campen, 2010, A comparison of vascular effects from complex and individual air pollutants indicates a role for monoxide gases and volatile hydrocarbons, Environ Health Perspect, 118, 921, 10.1289/ehp.0901207 Thomas, 2014, Why did ancient people have atherosclerosis? From autopsies to computed tomography to potential risk factors, Glob Heart, 9, 229, 10.1016/j.gheart.2014.04.002 Newton-Cheh, 2009, A common variant at 9p21 is associated with sudden and arrhythmic cardiac death, Circulation, 120, 2062, 10.1161/CIRCULATIONAHA.109.879049 Smith, 2009, Common genetic variants on chromosome 9p21 confers risk of ischemic stroke: a large-scale genetic association study, Circ Cardiovasc Genet, 2, 159, 10.1161/CIRCGENETICS.108.835173 Shen, 2008, Four SNPs on chromosome 9p21 in a South Korean population implicate a genetic locus that confers high cross-race risk for development of coronary artery disease, Arterioscler Thromb Vasc Biol, 28, 360, 10.1161/ATVBAHA.107.157248 Chen, 2009, The 9p21 susceptibility locus for coronary artery disease and the severity of coronary atherosclerosis, BMC Cardiovasc Disord, 9, 3, 10.1186/1471-2261-9-3 Yasuda, 2007, Association of single nucleotide polymorphisms in endothelin family genes with the progression of atherosclerosis in patients with essential hypertension, J Hum Hypertens, 21, 883, 10.1038/sj.jhh.1002234 Green, 2010, A draft sequence of the Neandertal genome, Science, 328, 710, 10.1126/science.1188021 Reich, 2010, Genetic history of an archaic hominin group from Denisova Cave in Siberia, Nature, 468, 1053, 10.1038/nature09710 Khairat, 2013, First insights into the metagenome of Egyptian mummies using next-generation sequencing, J Appl Genet, 54, 309, 10.1007/s13353-013-0145-1