Genome-wide identification of 216 G protein-coupled receptor (GPCR) genes from the marine water flea Diaphanosoma celebensis

Alexander, 2019, The concise guide to pharmacology 2019/2020: introduction and other protein targets, Br. J. Pharmacol., 176, 1 Bainton, 2005, Moody encodes two GPCRs that regulate cocaine behaviors and blood-brain barrier permeability in drosophila, Cell, 123, 145, 10.1016/j.cell.2005.07.029 Bjarnadóttir, 2006, Comprehensive repertoire and phylogenetic analysis of the G protein-coupled receptors in human and mouse, Genomics, 88, 263, 10.1016/j.ygeno.2006.04.001 Brody, 2000, Drosophila melanogaster G protein-coupled receptors, J. Cell Biol., 150, 83, 10.1083/jcb.150.2.F83 Calkins, 2019, GPCR annotation, G proteins, and transcriptomics of fire ant (Solenopsis invicta) queen and worker brain: an improved view of signaling in an invasive superorganism, Gen. Comp. Endocrinol., 278, 89, 10.1016/j.ygcen.2018.12.008 Choi, 2020, Complete mitochondrial DNA of the marine water flea Diaphanosoma celebensis (Cladocera, Sididae), Mito. DNA B, 5, 2254 Christie, 2011, Crustacean neuroendocrine systems and their signaling agents, Cell Tissue Res., 345, 41, 10.1007/s00441-011-1183-9 Dorsam, 2007, G-protein-coupled receptors and cancer, Nat. Rev. Cancer, 7, 79, 10.1038/nrc2069 Dubocovich, 2007, Melatonin receptors: role on sleep and circadian rhythm regulation, Sleep Med., 8, 34, 10.1016/j.sleep.2007.10.007 Elphick, 2018, Evolution of neuropeptide signalling systems, J. Exp. Biol., 9, 221 Feuda, 2016, Conservation, duplication, and divergence of five opsin genes in insect evolution, Genome Biol. Evol., 9, 579, 10.1093/gbe/evw015 Flanagan, 2019, Frizzled-7 is required for wnt signaling in gastric tumors with and without apc mutations, Cancer Res., 79, 970, 10.1158/0008-5472.CAN-18-2095 Fredriksson, 2003, The G protein-coupled receptors in the human genome form five main families. phylogenetic analysis, paralogon groups, and fingerprints, Mol. Pharmacol., 63, 1256, 10.1124/mol.63.6.1256 Gacasan, 2017, G protein-coupled receptors: the evolution of structural insight, AIMS. Biophys., 4, 491, 10.3934/biophy.2017.3.491 Gloriam, 2007, The G protein-coupled receptor subset of the rat genome, BMC Genom., 8, 338, 10.1186/1471-2164-8-338 Hagiwara, 2016, Production and use of two marine zooplanktons, Tigriopus japonicus and Diaphanosoma celebensis, as live food for red sea bream Pagrus major larvae, Fish. Sci., 82, 799, 10.1007/s12562-016-1005-9 Hill, 2002, G protein-coupled receptors in Anopheles gambiae, Science, 298, 176, 10.1126/science.1076196 Hoffmann, 2000, Environmental stress as an evolutionary force, Bioscience, 50, 217, 10.1641/0006-3568(2000)050[0217:ESAAEF]2.3.CO;2 Joshi, 2015, Role of GnRH, HCG and kisspeptin on reproduction of fishes, Indian J. Sci. Technol., 8, 83 Käll, 2004, A combined transmembrane topology and signal peptide prediction method, J. Mol. Biol., 338, 1027, 10.1016/j.jmb.2004.03.016 Kamesh, 2008, The repertoire of G protein-coupled receptors in the sea squirt Ciona intestinalis, BMC Evol. Biol., 8, 129, 10.1186/1471-2148-8-129 Katoh, 2002, MAFFT: a novel method for rapid multiple sequence alignment based on fast fourier transform, Nucleic Acids Res., 30, 3059, 10.1093/nar/gkf436 Kim, 2018, De novo transcriptome assembly of brackish water flea Diaphanosoma celebensis based on short-term cadmium and benzo[α]pyrene exposure experiments, Hereditas, 155, 36, 10.1186/s41065-018-0075-3 Kim, 2021, The genome of the marine water flea Diaphanosoma celebensis: identification of phase I, II, and III detoxification genes and potential applications in marine molecular ecotoxicology, Comp. Biochem. Physiol. D., 37 Kim, 2021, Genome-wide identification of 226 G protein-coupled receptor (GPCR) genes from the water flea Daphnia magna, Gen. Comp. Endocrinol. Korovchinsky, 1993, New records of Diaphanosoma celebensis Stingelin, 1900 (Crustacea: Daphniiformes: Sididae) in tropical Asia with remarks on the morphological variability and bilogy of the species, Rev. Hydrobiol. Trop., 26, 119 Korovchinsky, 2001, Review of sididae (Crustacea: cladocera: Ctenopoda) of the Pacific Ocean Islands, with description of a new species of diaphanosoma from West Samoa, Hydrobiologia, 455, 171, 10.1023/A:1011981332027 Kunwar, 2003, Tre1, a G protein-coupled receptor, directs transepithelial migration of drosophila germ cells, PLoS Biol., 1, E80, 10.1371/journal.pbio.0000080 Lagerström, 2006, The G protein-coupled receptor subset of the chicken genome, PLoS Comput. Biol., 2, 10.1371/journal.pcbi.0020054 Lu, 2019, Adipokinetic hormone receptor mediates trehalose homeostasis to promote vitellogenin uptake by oocytes in Nilaparvata lugens, Front. Physiol., 9, 1904, 10.3389/fphys.2018.01904 Marshall, 2015, Colour vision in marine organisms, Curr. Opin. Neurobiol., 34, 86, 10.1016/j.conb.2015.02.002 Metpally, 2005, Cross genome phylogenetic analysis of human and drosophila G protein-coupled receptors: application to functional annotation of orphan receptors, BMC Genom., 6, 106, 10.1186/1471-2164-6-106 Mullur, 2014, Thyroid hormone regulation of metabolism, Physiol. Rev., 94, 355, 10.1152/physrev.00030.2013 Nässel, 2019, Recent advances in neuropeptide signaling in drosophila, from genes to physiology and behavior, Prog. Neurobiol., 179, 10.1016/j.pneurobio.2019.02.003 Nordström, 2008, The amphioxus (Branchiostoma floridae) genome contains a highly diversified set of G protein-coupled receptors, BMC Evol. Biol., 8, 9, 10.1186/1471-2148-8-9 Ohno, 1970 Perez, 2003, The evolutionarily triumphant G protein-coupled receptor, Mol. Pharmacol., 63, 1202, 10.1124/mol.63.6.1202 Picone, 2014, Taste and odorant receptors of the coelacanth – a gene repertoire in transition, J. Exp. Zool. B, 322, 403, 10.1002/jez.b.22531 Posada, 2004, Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests, Syst. Biol., 53, 793, 10.1080/10635150490522304 Rogers, 2017, Tandem duplications lead to novel expression patterns through exon shuffling in drosophila yakuba, PLoS Genet., 13, 1, 10.1371/journal.pgen.1006795 Sakai, 2008, Functions of a GnRH receptor heterodimer of the ascidian, Ciona intestinalis, Acta Biol. Hung., 59, 241, 10.1556/ABiol.59.2008.Suppl.34 Sarkar, 2011, The G protein-coupled receptors in the pufferfish Takifugu rubripes, BMC Bioinformat., 12, 1, 10.1186/1471-2105-12-S1-S3 Schiöth, 2005, The GRAFS classification system of G-protein coupled receptors in comparative perspective, Gen. Comp. Endocrinol., 142, 94, 10.1016/j.ygcen.2004.12.018 Schwarz, 1978, Estimating the dimension of a model, Ann. Stat., 6, 461, 10.1214/aos/1176344136 Semmens, 2017, The evolution of neuropeptide signalling: insights from echinoderms, Brief. Funct. Genomics, 16, 288, 10.1093/bfgp/elx005 Stamatakis, 2014, RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies, Bioinformatics, 30, 1312, 10.1093/bioinformatics/btu033 Stieb, 2017, Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes, Mol. Ecol., 26, 1323, 10.1111/mec.13968 Strotmann, 2011, Evolution of GPCR: change and continuity, Mol. Cell. Endocrinol., 331, 170, 10.1016/j.mce.2010.07.012 Terakita, 2005, The opsins, Genome Biol., 6, 213, 10.1186/gb-2005-6-3-213 Tompkins, 1995 Tusnády, 2001, The HMMTOP transmembrane topology prediction server, Bioinformatics, 17, 849, 10.1093/bioinformatics/17.9.849 Vassilatis, 2003, The G protein-coupled receptor repertoires of human and mouse, Proc. Natl. Acad. Sci. U. S. A., 100, 4903, 10.1073/pnas.0230374100 Wang, 2009, Effects of algal concentration and initial density on the population growth of Diaphanosoma celebensis stingelin (Crustacea, Cladocera), Chin. J. Oceanol. Limnol., 27, 480, 10.1007/s00343-009-9267-z Zandawala, 2017, The evolution and nomenclature of GnRH-type and corazonin-type neuropeptide signaling systems, Gen. Comp. Endocrinol., 264, 64, 10.1016/j.ygcen.2017.06.007