Genome-wide end-sequenced BAC resources for the NOD/MrkTac☆ and NOD/ShiLtJ☆☆ mouse genomes

Devendra, 2004, Type 1 diabetes: recent developments, BMJ, 328, 750, 10.1136/bmj.328.7442.750 Leiter, 2001, The NOD mouse: a model for insulin-dependent diabetes mellitus, Curr. Protoc. Immunol., Chapter 15, 10.1002/0471142735.im1509s24 Wicker, 1995, Genetic control of autoimmune diabetes in the NOD mouse, Annu. Rev. Immunol., 13, 179, 10.1146/annurev.iy.13.040195.001143 Anderson, 2005, The NOD mouse: a model of immune dysregulation, Annu. Rev. Immunol., 23, 447, 10.1146/annurev.immunol.23.021704.115643 Atkinson, 1999, The NOD mouse model of type 1 diabetes: as good as it gets?, Nat. Med., 5, 601, 10.1038/9442 Todd, 1999, From genome to aetiology in a multifactorial disease, type 1 diabetes, Bioessays, 21, 164, 10.1002/(SICI)1521-1878(199902)21:2<164::AID-BIES10>3.0.CO;2-4 Makino, 1980, Breeding of a non-obese, diabetic strain of mice, Jikken Dobutsu, 29, 1 Ivakine, 2005, Sex-specific effect of insulin-dependent diabetes 4 on regulation of diabetes pathogenesis in the nonobese diabetic mouse, J. Immunol., 174, 7129, 10.4049/jimmunol.174.11.7129 Ridgway, 2008, Gene–gene interactions in the NOD mouse model of type 1 diabetes, Adv. Immunol., 100, 151, 10.1016/S0065-2776(08)00806-7 Erlich, 2008, HLA DR-DQ haplotypes and genotypes and type 1 diabetes risk: analysis of the type 1 diabetes genetics consortium families, Diabetes, 57, 1084, 10.2337/db07-1331 Adams, 2005, A genome-wide, end-sequenced 129Sv BAC library resource for targeting vector construction, Genomics, 86, 753, 10.1016/j.ygeno.2005.08.003 Hanna, 2009, Metastable pluripotent states in NOD-mouse-derived ESCs, Cell Stem Cell, 4, 513, 10.1016/j.stem.2009.04.015 Nichols, 2009, Validated germline-competent embryonic stem cell lines from nonobese diabetic mice, Nat. Med., 15, 814, 10.1038/nm.1996 Ning, 2001, SSAHA: a fast search method for large DNA databases, Genome Res., 11, 1725, 10.1101/gr.194201 Hubbard, 2009, Ensembl 2009, Nucleic Acids Res., 37, D690, 10.1093/nar/gkn828 Dowell, 2001, The distributed annotation system, BMC Bioinformatics, 2, 7, 10.1186/1471-2105-2-7 Abe, 2004, Contribution of Asian mouse subspecies Mus musculus molossinus to genomic constitution of strain C57BL/6J, as defined by BAC-end sequence-SNP analysis, Genome Res., 14, 2439, 10.1101/gr.2899304 Osoegawa, 2000, Bacterial artificial chromosome libraries for mouse sequencing and functional analysis, Genome Res., 10, 116 Antoch, 1997, Functional identification of the mouse circadian clock gene by transgenic BAC rescue, Cell, 89, 655, 10.1016/S0092-8674(00)80246-9 Gregory, 2002, A physical map of the mouse genome, Nature, 418, 743, 10.1038/nature00957 Zhao, 2001, A comprehensive BAC resource, Nucleic Acids Res., 29, 141, 10.1093/nar/29.1.141 te Riele, 1992, Highly efficient gene targeting in embryonic stem cells through homologous recombination with isogenic DNA constructs, Proc. Natl. Acad. Sci. U. S. A., 89, 5128, 10.1073/pnas.89.11.5128 Bentley, 2008, Accurate whole human genome sequencing using reversible terminator chemistry, Nature, 456, 53, 10.1038/nature07517 Frengen, 1999, A modular, positive selection bacterial artificial chromosome vector with multiple cloning sites, Genomics, 58, 250, 10.1006/geno.1998.5693 Wendl, 1998, Automated sequence preprocessing in a large-scale sequencing environment, Genome Res., 8, 975, 10.1101/gr.8.9.975