Đặc điểm toàn bộ hệ gen và mô hình biểu hiện của gia đình gen yếu tố phản ứng auxin (ARF) ở đậu nành và đậu tây

citation_journal_title=Curr Issues Mol Biol; citation_title=Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice; citation_author=KA Attia, AF Abdelkhalik, MH Ammar, C Wei, J Yang, DA Lightfoot, WM El-Sayed, HA El-Shemy; citation_volume=11; citation_publication_date=2009; citation_pages=29-34; citation_id=CR1 citation_journal_title=Nature; citation_title=The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots; citation_author=I Blilou, J Xu, M Wildwater, V Willemsen, I Paponov, J Friml, R Heidstra, M Aida, K Palme, B Scheres; citation_volume=433; citation_publication_date=2005; citation_pages=39-44; citation_doi=10.1038/nature03184; citation_id=CR2 citation_journal_title=Nat Chem Biol; citation_title=A combinatorial TIR1/AFB-Aux/IAA co-receptor system for differential sensing of auxin; citation_author=LI Calderon Villalobos, S Lee, C Oliveira, A Ivetac, W Brandt, L Armitage, LB Sheard, X Tan, G Parry, H Mao; citation_volume=8; citation_publication_date=2012; citation_pages=477-485; citation_doi=10.1038/nchembio.926; citation_id=CR3 citation_journal_title=Trends Plant Sci; citation_title=Auxin signaling and regulated protein degradation; citation_author=N Dharmasiri, M Estelle; citation_volume=9; citation_publication_date=2004; citation_pages=302-308; citation_doi=10.1016/j.tplants.2004.04.003; citation_id=CR4 citation_journal_title=Nat Rev Mol Cell Biol; citation_title=ARF family G proteins and their regulators: roles in membrane transport, development and disease; citation_author=JG Donaldson, CL Jackson; citation_volume=12; citation_publication_date=2011; citation_pages=362-375; citation_doi=10.1038/nrm3117; citation_id=CR5 citation_journal_title=Development; citation_title=AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana ; citation_author=CM Ellis, P Nagpal, JC Young, G Hagen, TJ Guilfoyle, JW Reed; citation_volume=132; citation_publication_date=2005; citation_pages=4563-4574; citation_doi=10.1242/dev.02012; citation_id=CR6 citation_journal_title=PLoS One; citation_title=High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes; citation_author=N Fahlgren, MD Howell, KD Kasschau, EJ Chapman, CM Sullivan, JS Cumbie, SA Givan, TF Law, SR Grant, JL Dangl; citation_volume=2; citation_publication_date=2007; citation_pages=e219; citation_doi=10.1371/journal.pone.0000219; citation_id=CR7 citation_journal_title=Plant J; citation_title=Parallel structural evolution of auxin response factors in the angiosperms; citation_author=C Finet, C Fourquin, M Vinauger, A Berne-Dedieu, P Chambrier, S Paindavoine, CP Scutt; citation_volume=63; citation_publication_date=2010; citation_pages=952-959; citation_doi=10.1111/j.1365-313X.2010.04292.x; citation_id=CR8 citation_journal_title=Plant J; citation_title=PICKLE is required for SOLITARY-ROOT/IAA14-mediated repression of ARF7 and ARF19 activity during Arabidopsis lateral root initiation; citation_author=H Fukaki, N Taniguchi, M Tasaka; citation_volume=48; citation_publication_date=2006; citation_pages=380-389; citation_doi=10.1111/j.1365-313X.2006.02882.x; citation_id=CR9 citation_journal_title=Nucleic Acids Res; citation_title=Phytozome: a comparative platform for green plant genomics; citation_author=DM Goodstein, S Shu, R Howson, R Neupane, RD Hayes, J Fazo, T Mitros, W Dirks, U Hellsten, N Putnam; citation_volume=40; citation_publication_date=2012; citation_pages=D1178-1186; citation_doi=10.1093/nar/gkr944; citation_id=CR10 citation_journal_title=Trends Biochem Sci; citation_title=Function of the ubiquitin-proteasome pathway in auxin response; citation_author=WM Gray, I Estelle; citation_volume=25; citation_publication_date=2000; citation_pages=133-138; citation_doi=10.1016/S0968-0004(00)01544-9; citation_id=CR11 citation_journal_title=Nature; citation_title=Auxin regulates SCF(TIR1)-dependent degradation of AUX/IAA proteins; citation_author=WM Gray, S Kepinski, D Rouse, O Leyser, M Estelle; citation_volume=414; citation_publication_date=2001; citation_pages=271-276; citation_doi=10.1038/35104500; citation_id=CR12 citation_journal_title=Curr Opin Plant Biol; citation_title=Auxin response factors; citation_author=TJ Guilfoyle, G Hagen; citation_volume=10; citation_publication_date=2007; citation_pages=453-460; citation_doi=10.1016/j.pbi.2007.08.014; citation_id=CR13 citation_journal_title=DNA Res; citation_title=The auxin response factor transcription factor family in soybean: genome-wide identification and expression analyses during development and water stress; citation_author=CV Ha, DT Le, R Nishiyama, Y Watanabe, S Sulieman, UT Tran, K Mochida, NV Dong, K Yamaguchi-Shinozaki, K Shinozaki; citation_volume=20; citation_publication_date=2013; citation_pages=511-524; citation_doi=10.1093/dnares/dst027; citation_id=CR14 citation_journal_title=Plant Mol Biol; citation_title=Auxin-responsive gene expression: genes, promoters and regulatory factors; citation_author=G Hagen, T Guilfoyle; citation_volume=49; citation_publication_date=2002; citation_pages=373-385; citation_doi=10.1023/A:1015207114117; citation_id=CR15 citation_journal_title=J Anhui Agric Univ; citation_title=Genome-wide analysis and evolution of the auxin response factor (ARF) gene family in Sorghum bicolor ; citation_author=JIANG Haiyang, WEI Wei, LIU Yan, Z SuWen, C BeiJiu; citation_volume=37; citation_publication_date=2010; citation_pages=395-400; citation_id=CR16 citation_journal_title=Plant Cell; citation_title=The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue; citation_author=RM Harper, EL Stowe-Evans, DR Luesse, H Muto, K Tatematsu, MK Watahiki, K Yamamoto, E Liscum; citation_volume=12; citation_publication_date=2000; citation_pages=757-770; citation_doi=10.1105/tpc.12.5.757; citation_id=CR17 citation_journal_title=BMC Plant Biol; citation_title=Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa ; citation_author=UC Kalluri, SP Difazio, AM Brunner, GA Tuskan; citation_volume=7; citation_publication_date=2007; citation_pages=59; citation_doi=10.1186/1471-2229-7-59; citation_id=CR18 citation_journal_title=Source Code Biol Med; citation_title=HeatmapGenerator: high performance RNAseq and microarray visualization software suite to examine differential gene expression levels using an R and C++ hybrid computational pipeline; citation_author=BB Khomtchouk, DJ Booven, C Wahlestedt; citation_volume=9; citation_publication_date=2014; citation_pages=30; citation_doi=10.1186/s13029-014-0030-2; citation_id=CR19 citation_journal_title=New Phytol; citation_title=Deletion of MP/ARF5 domains III and IV reveals a requirement for Aux/IAA regulation in Arabidopsis leaf vascular patterning; citation_author=NT Krogan, W Ckurshumova, D Marcos, AE Caragea, T Berleth; citation_volume=194; citation_publication_date=2012; citation_pages=391-401; citation_doi=10.1111/j.1469-8137.2012.04064.x; citation_id=CR20 citation_journal_title=Mol Genet Genomics; citation_title=Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development; citation_author=R Kumar, AK Tyagi, AK Sharma; citation_volume=285; citation_publication_date=2011; citation_pages=245-260; citation_doi=10.1007/s00438-011-0602-7; citation_id=CR21 citation_journal_title=Mol Biol Evol; citation_title=MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets; citation_author=S Kumar, G Stecher, K Tamura; citation_volume=33; citation_issue=7; citation_publication_date=2016; citation_pages=1870-1874; citation_doi=10.1093/molbev/msw054; citation_id=CR22 citation_journal_title=Front Plant Sci; citation_title=Genome-wide identification, isolation and expression analysis of auxin response factor (ARF) gene family in sweet orange (Citrus sinensis); citation_author=SB Li, WZ OuYang, XJ Hou, LL Xie, CG Hu, JZ Zhang; citation_volume=6; citation_publication_date=2015; citation_pages=119; citation_id=CR23 citation_journal_title=Plant Physiol; citation_title=Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection; citation_author=M Libault, A Farmer, L Brechenmacher, J Drnevich, RJ Langley, DD Bilgin, O Radwan, DJ Neece, SJ Clough, GD May; citation_volume=152; citation_publication_date=2010; citation_pages=541-552; citation_doi=10.1104/pp.109.148379; citation_id=CR24 citation_journal_title=Plant J; citation_title=An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants; citation_author=M Libault, A Farmer, T Joshi, K Takahashi, RJ Langley, LD Franklin, J He, D Xu, G May, G Stacey; citation_volume=63; citation_publication_date=2010; citation_pages=86-99; citation_id=CR25 citation_journal_title=PLoS ONE; citation_title=INK4/ARF transcript expression is associated with chromosome 9p21 variants linked to atherosclerosis; citation_author=Y Liu, HK Sanoff, H Cho, CE Burd, C Torrice, KL Mohlke, JG Ibrahim, NE Thomas, NE Sharpless; citation_volume=4; citation_publication_date=2009; citation_pages=e5027; citation_doi=10.1371/journal.pone.0005027; citation_id=CR26 citation_journal_title=Nucleic Acids Res; citation_title=Analysis tool web services from the EMBL-EBI; citation_author=H McWilliam, W Li, M Uludag, S Squizzato, YM Park, N Buso, AP Cowley, R Lopez; citation_volume=41; citation_publication_date=2013; citation_pages=W597-600; citation_doi=10.1093/nar/gkt376; citation_id=CR27 citation_journal_title=Mol Genet Genomics; citation_title=Auxin response factor gene family in Brassica rapa: genomic organization, divergence, expression, and evolution; citation_author=JH Mun, HJ Yu, JY Shin, M Oh, HJ Hwang, H Chung; citation_volume=287; citation_publication_date=2012; citation_pages=765-784; citation_doi=10.1007/s00438-012-0718-4; citation_id=CR28 citation_journal_title=Plant Mol Biol; citation_title=Involvement of auxin signaling mediated by IAA14 and ARF7/19 in membrane lipid remodeling during phosphate starvation; citation_author=T Narise, K Kobayashi, S Baba, M Shimojima, S Masuda, H Fukaki, H Ohta; citation_volume=72; citation_publication_date=2010; citation_pages=533-544; citation_doi=10.1007/s11103-009-9589-4; citation_id=CR29 citation_journal_title=Plant Cell; citation_title=Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19; citation_author=Y Okushima, PJ Overvoorde, K Arima, JM Alonso, A Chan, C Chang, JR Ecker, B Hughes, A Lui, D Nguyen; citation_volume=17; citation_publication_date=2005; citation_pages=444-463; citation_doi=10.1105/tpc.104.028316; citation_id=CR30 citation_journal_title=BMC Genom; citation_title=An RNA-Seq based gene expression atlas of the common bean; citation_author=JA O’Rourke, LP Iniguez, F Fu, B Bucciarelli, SS Miller, SA Jackson, PE McClean, J Li, X Dai, PX Zhao; citation_volume=15; citation_publication_date=2014; citation_pages=866; citation_doi=10.1186/1471-2164-15-866; citation_id=CR31 citation_journal_title=Plant Cell; citation_title=Auxin response factors mediate Arabidopsis organ asymmetry via modulation of KANADI activity; citation_author=I Pekker, JP Alvarez, Y Eshed; citation_volume=17; citation_publication_date=2005; citation_pages=2899-2910; citation_doi=10.1105/tpc.105.034876; citation_id=CR32 citation_journal_title=Plant J; citation_title=Journey through the past: 150 million years of plant genome evolution; citation_author=S Proost, P Pattyn, T Gerats, Y Peer; citation_volume=66; citation_publication_date=2011; citation_pages=58-65; citation_doi=10.1111/j.1365-313X.2011.04521.x; citation_id=CR33 citation_journal_title=New Phytol; citation_title=OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa); citation_author=Y Qi, S Wang, C Shen, S Zhang, Y Chen, Y Xu, Y Liu, Y Wu, D Jiang; citation_volume=193; citation_publication_date=2012; citation_pages=109-120; citation_doi=10.1111/j.1469-8137.2011.03910.x; citation_id=CR34 citation_journal_title=Nature; citation_title=Genome sequence of the palaeopolyploid soybean; citation_author=J Schmutz, SB Cannon, J Schlueter, J Ma, T Mitros, W Nelson, DL Hyten, Q Song, JJ Thelen, J Cheng; citation_volume=463; citation_publication_date=2010; citation_pages=178-183; citation_doi=10.1038/nature08670; citation_id=CR35 citation_journal_title=Nat Genet; citation_title=A reference genome for common bean and genome-wide analysis of dual domestications; citation_author=J Schmutz, PE McClean, S Mamidi, GA Wu, SB Cannon, J Grimwood, J Jenkins, S Shu, Q Song, C Chavarro; citation_volume=46; citation_publication_date=2014; citation_pages=707-713; citation_doi=10.1038/ng.3008; citation_id=CR36 citation_journal_title=Development; citation_title=The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs; citation_author=MC Schruff, M Spielman, S Tiwari, S Adams, N Fenby, RJ Scott; citation_volume=133; citation_publication_date=2006; citation_pages=251-261; citation_doi=10.1242/dev.02194; citation_id=CR37 citation_journal_title=J Exp Bot; citation_title=Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.); citation_author=C Shen, S Wang, Y Bai, Y Wu, S Zhang, M Chen, TJ Guilfoyle, P Wu, Y Qi; citation_volume=61; citation_publication_date=2010; citation_pages=3971-3981; citation_doi=10.1093/jxb/erq208; citation_id=CR38 citation_journal_title=Plant Cell Environ; citation_title=OsARF16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.); citation_author=C Shen, S Wang, S Zhang, Y Xu, Q Qian, Y Qi, DA Jiang; citation_volume=36; citation_publication_date=2013; citation_pages=607-620; citation_doi=10.1111/pce.12001; citation_id=CR39 citation_journal_title=Curr Opin Plant Biol; citation_title=Paleopolyploidy and gene duplication in soybean and other legumes; citation_author=RC Shoemaker, J Schlueter, JJ Doyle; citation_volume=9; citation_publication_date=2006; citation_pages=104-109; citation_doi=10.1016/j.pbi.2006.01.007; citation_id=CR40 citation_journal_title=Proc Natl Acad Sci USA; citation_title=The hidden duplication past of Arabidopsis thaliana ; citation_author=C Simillion, K Vandepoele, MC Montagu, M Zabeau, Y Peer; citation_volume=99; citation_publication_date=2002; citation_pages=13627-13632; citation_doi=10.1073/pnas.212522399; citation_id=CR41 citation_journal_title=Mol Genet Genom; citation_title=Genome-wide identification, classification and expression analysis of the heat shock transcription factor family in Chinese cabbage; citation_author=X Song, G Liu, W Duan, T Liu, Z Huang, J Ren, Y Li, X Hou; citation_volume=289; citation_publication_date=2014; citation_pages=541-551; citation_doi=10.1007/s00438-014-0833-5; citation_id=CR42 citation_journal_title=Nucleic Acids Res; citation_title=The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools; citation_author=JD Thompson, TJ Gibson, F Plewniak, F Jeanmougin, DG Higgins; citation_volume=25; citation_publication_date=1997; citation_pages=4876-4882; citation_doi=10.1093/nar/25.24.4876; citation_id=CR43 citation_journal_title=Plant Cell; citation_title=The roles of auxin response factor domains in auxin-responsive transcription; citation_author=SB Tiwari, G Hagen, T Guilfoyle; citation_volume=15; citation_publication_date=2003; citation_pages=533-543; citation_doi=10.1105/tpc.008417; citation_id=CR44 citation_journal_title=Proc Natl Acad Sci USA; citation_title=Activation and repression of transcription by auxin-response factors; citation_author=T Ulmasov, G Hagen, TJ Guilfoyle; citation_volume=96; citation_publication_date=1999; citation_pages=5844-5849; citation_doi=10.1073/pnas.96.10.5844; citation_id=CR45 citation_journal_title=Plant J; citation_title=Dimerization and DNA binding of auxin response factors; citation_author=T Ulmasov, G Hagen, TJ Guilfoyle; citation_volume=19; citation_publication_date=1999; citation_pages=309-319; citation_doi=10.1046/j.1365-313X.1999.00538.x; citation_id=CR46 citation_journal_title=Gene; citation_title=Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa); citation_author=D Wang, K Pei, Y Fu, Z Sun, S Li, H Liu, K Tang, B Han, Y Tao; citation_volume=394; citation_publication_date=2007; citation_pages=13-24; citation_doi=10.1016/j.gene.2007.01.006; citation_id=CR47 citation_journal_title=J Plant Growth Regul; citation_title=Auxin signaling involves regulated protein degradation by the ubiquitin-proteasome pathway: recent advances in auxin biology; citation_author=SP Ward, M Estelle; citation_volume=20; citation_publication_date=2001; citation_pages=265-273; citation_doi=10.1007/s003440010023; citation_id=CR48 citation_journal_title=Plant Cell Rep; citation_title=Identification, isolation and expression analysis of auxin response factor (ARF) genes in Solanum lycopersicum ; citation_author=J Wu, F Wang, L Cheng, F Kong, Z Peng, S Liu, X Yu, G Lu; citation_volume=30; citation_publication_date=2011; citation_pages=2059-2073; citation_doi=10.1007/s00299-011-1113-z; citation_id=CR49 citation_journal_title=BMC Genom; citation_title=Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize; citation_author=H Xing, RN Pudake, G Guo, G Xing, Z Hu, Y Zhang, Q Sun, Z Ni; citation_volume=12; citation_publication_date=2011; citation_pages=178; citation_doi=10.1186/1471-2164-12-178; citation_id=CR50 citation_journal_title=Annu Rev Plant Biol; citation_title=Auxin biosynthesis and its role in plant development; citation_author=Y Zhao; citation_volume=61; citation_publication_date=2010; citation_pages=49-64; citation_doi=10.1146/annurev-arplant-042809-112308; citation_id=CR51