Genome-wide association mapping and transcriptomic analysis reveal key drought-responding genes in barley seedlings

Current Plant Biology - Tập 33 - Trang 100277 - 2023
Jiangyan Xiong1, Danyi Chen1, Yeke Chen1, Dezhi Wu2, Guoping Zhang1
1Department of Agronomy, Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou 310058, China
2College of Agronomy, Hunan Agricultural University, Changsha 410128, China

Tài liệu tham khảo

Andrade, 2015, Expression profiles of sugarcane under drought conditions: variation in gene regulation, Genet. Mol. Biol., 38, 465, 10.1590/S1415-475738420140288 Anjum, 2017, Growth and developmental responses of crop plants under drought stress: a review, Zemdirb. -Agric., 104, 267, 10.13080/z-a.2017.104.034 Binott, 2017, Physiological and molecular characterization of Kenyan barley (Hordeum vulgare L.) seedlings for salinity and drought tolerance, Euphytica, 213 Chen, 2019, Leaf epidermis transcriptome reveals drought-Induced hormonal signaling for stomatal regulation in wild barley, Plant Growth Regul., 87, 39, 10.1007/s10725-018-0450-0 Chen, 2022, Phosphorylation of SWEET sucrose transporters regulates plant root:shoot ratio under drought, Nat. Plants, 8, 68, 10.1038/s41477-021-01040-7 Chen, 2021, Protein kinases in plant responses to drought, salt, and cold stress, J. Integr. Plant Biol., 63, 53, 10.1111/jipb.13061 Condorelli, 2022, Genome wide association study uncovers the QTLome for osmotic adjustment and related drought adaptive traits in durum wheat, Genes, 13, 293, 10.3390/genes13020293 Creelman, 1997, Biosynthesis and action of jasmonates in plants. Annu. Rev, Plant Physiol. Mol. Biol., 48, 355, 10.1146/annurev.arplant.48.1.355 Daryanto, 2016, Global synthesis of drought effects on maize and wheat production, PLoS One, 11, 10.1371/journal.pone.0156362 Dong, 2020, Necrotic upper tips1 mimics heat and drought stress and encodes a protoxylem-specific transcription factor in maize, Proc. Natl. Acad. Sci., 117, 20908, 10.1073/pnas.2005014117 Fazeli, 2007, Effect of drought on biomass, protein content, lipid peroxidation and antioxidant enzymes in two sesame cultivars, Biol. Plant., 51, 98, 10.1007/s10535-007-0020-1 Feng, 2020, Overexpression of HvAKT1 improves drought tolerance in barley by regulating root ion homeostasis and ROS and NO signaling, J. Exp. Bot., 71, 6587, 10.1093/jxb/eraa354 Geng, 2021, Identification of genetic loci and candidate genes related to β-glucan content in barley grain by genome-wide association study in International Barley Core Selected Collection, Mol. Breed., 41, 6, 10.1007/s11032-020-01199-5 Gong, 2020, Plant abiotic stress response and nutrient use efficiency, Sci. China.: Life Sci., 63, 635, 10.1007/s11427-020-1683-x Gupta, 2020, The physiology of plant responses to drought, Science, 368, 266, 10.1126/science.aaz7614 Han, 2020, Identification of the gene network modules highly associated with the synthesis of phenolics compounds in barley by transcriptome and metabolome analysis, Food Chem., 323, 10.1016/j.foodchem.2020.126862 He, 2019, Gene-set association and epistatic analyses reveal complex gene interaction networks affecting flowering time in a worldwide barley collection, J. Exp. Bot., 70, 5603, 10.1093/jxb/erz332 He, 2015, HvEXPB7, a novel β-expansin gene revealed by the root hair transcriptome of Tibetan wild barley, improves root hair growth under drought stress, J. Exp. Bot., 66, 7405, 10.1093/jxb/erv436 Hoang, 2019, Genome-wide association study of a panel of Vietnamese rice landraces reveals new QTLs for tolerance to water deficit during the vegetative phase, Rice, 12 Jamieson, 1995, Drought influences on grain yield of barley, wheat, and maize, New Zeal. J. Crop Hort., 23, 55, 10.1080/01140671.1995.9513868 Janiak, 2018, No time to waste: transcriptome study reveals that drought tolerance in barley may be attributed to stressed-like expression patterns that exist before the occurrence of stress, Front. Plant Sci., 8, 10.3389/fpls.2017.02212 Joshi, 2016, Transcription factors and plants response to drought stress: current understanding and future directions, Front. Plant Sci., 7 Kokáš, 2016, Dataset for transcriptional response of barley (Hordeum vulgare) exposed to drought and subsequent re-watering, Data Brief., 8, 334, 10.1016/j.dib.2016.05.051 Mascher, 2017, A chromosome conformation capture ordered sequence of the barley genome, Nature, 544, 427, 10.1038/nature22043 Mei, 2022, A gain-of-function allele of a DREB transcription factor gene ameliorates drought tolerance in wheat, Plant Cell, c248 Melcher, 2009, A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors, Nature, 462, 602, 10.1038/nature08613 Ng, 2018, Regulating the regulators: the control of transcription factors in plant defense signaling, Int. J. Mol. Sci., 19, 3737, 10.3390/ijms19123737 Okamoto, 2013, Activation of dimeric ABA receptors elicits guard cell closure, ABA-regulated gene expression, and drought tolerance, Proc. Natl. Acad. Sci., 110, 12132, 10.1073/pnas.1305919110 Ooi, 2017, Direct modulation of the guard cell outward-rectifying potassium channel (GORK) by abscisic acid, Mol. Plant, 10, 1469, 10.1016/j.molp.2017.08.010 Park, 2009, Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins, Science, 324, 1068, 10.1126/science.1173041 Reynolds, 1970, The gravimetric method of soil moisture determination Part III An examination of factors influencing soil moisture variability, J. Hydrol., 11, 288, 10.1016/0022-1694(70)90068-5 Rodrigues, 2019, Source-sink regulation in crops under water deficit, Trends Plant Sci., 24, 652, 10.1016/j.tplants.2019.04.005 Lee, 2009, A protein kinase-phosphatase pair interacts with an ion channel to regulate ABA signaling in plant guard cells, Proc. Natl. Acad. Sci., 106, 21419, 10.1073/pnas.0910601106 Su, 2022, Transcriptome-wide m6A methylation profile reveals regulatory networks in roots of barley under cadmium stress, J. Hazard. Mater., 423, 10.1016/j.jhazmat.2021.127140 Sun, 2018, Identification of SNPs and candidate genes associated with salt tolerance at the seedling stage in cotton (Gossypium hirsutum L.), Front. Plant Sci., 9 Taïbi, 2017, Drought tolerance in Pinus halepensis seed sources as identified by distinctive physiological and molecular markers, Front. Plant Sci., 8 Tan, 2012, Genome wide analysis of nucleotide-binding site disease resistance genes in Brachypodium distachyon, Comp. Funct. Genom., 2012, 10.1155/2012/418208 Tiwari, 2019, Role of dehydrin-FK506-binding protein complex in enhancing drought tolerance through the ABA-mediated signaling pathway, Environ. Exp. Bot., 158, 136, 10.1016/j.envexpbot.2018.10.031 Tsou, 2012, An ER-targeted calcium-binding peptide confers salt and drought tolerance mediated by CIPK6 in Arabidopsis, Planta, 235, 539, 10.1007/s00425-011-1522-9 Tu, 2021, GWAS and transcriptomic integrating analysis reveals key salt-responding genes controlling Na+ content in barley roots, Plant Physiol. Biochem., 167, 596, 10.1016/j.plaphy.2021.08.038 Varshney, 2014, Harvesting the promising fruits of genomics: applying genome sequencing technologies to crop breeding, PLoS Biol., 12, 10.1371/journal.pbio.1001883 Varshney, 2009, Next-generation sequencing technologies and their implications for crop genetics and breeding, Trends Biotechnol., 27, 522, 10.1016/j.tibtech.2009.05.006 Wang, 2016, Genetic variation in ZmVPP1 contributes to drought tolerance in maize seedlings, Nat. Genet., 48, 1233, 10.1038/ng.3636 Wasternack, 2018, The oxylipin pathways: biochemistry and function, Annu. Rev. Plant Biol., 69, 363, 10.1146/annurev-arplant-042817-040440 Wu, 2015, Genome-wide association mapping of cadmium accumulation in different organs of barley, New Phytol., 208, 817, 10.1111/nph.13512 Zhang, 2015, Genome-wide association study for flowering time, maturity dates and plant height in early maturing soybean (Glycine max) germplasm, BMC Genom., 16, 217, 10.1186/s12864-015-1441-4 Zhao, 2019, Evolution of chloroplast retrograde signaling facilitates green plant adaptation to land, Proc. Natl. Acad. Sci., 116, 5015, 10.1073/pnas.1812092116 Zhao, 2010, Difference in response to drought stress among Tibet wild barley genotypes, Euphytica, 172, 395, 10.1007/s10681-009-0064-8 Zi, 2022, Alpha-linolenic acid mediates diverse drought responses in maize (Zea mays L.) at seedling and flowering stages, Molecules, 27, 771, 10.3390/molecules27030771