Genome-wide analysis of TIAR RNA ligands in mouse macrophages before and after LPS stimulation

Aznarez, 2008, A systematic analysis of intronic sequences downstream of 5' splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation, Genome Res., 18, 1247, 10.1101/gr.073155.107 Piecyk, 2000, TIA-1 is a translational silencer that selectively regulates the expression of TNF-alpha, EMBO J., 19, 4154, 10.1093/emboj/19.15.4154 Gueydan, 1999, Identification of TIAR as a protein binding to the translational regulatory AU-rich element of tumor necrosis factor alpha mRNA, J. Biol. Chem., 274, 2322, 10.1074/jbc.274.4.2322 Cok, 2003, The proximal region of the 3'-untranslated region of cyclooxygenase-2 is recognized by a multimeric protein complex containing HuR, TIA-1, TIAR, and the heterogeneous nuclear ribonucleoprotein U, J. Biol. Chem., 278, 36157, 10.1074/jbc.M302547200 Suswam, 2005, IL-1beta induces stabilization of IL-8 mRNA in malignant breast cancer cells via the 3' untranslated region: involvement of divergent RNA-binding factors HuR, KSRP and TIAR, Int. J. Cancer, 113, 911, 10.1002/ijc.20675 Dember, 1996, Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities, J. Biol. Chem., 271, 2783, 10.1074/jbc.271.5.2783 Kim, 2013, Distinct binding properties of TIAR RRMs and linker region, RNA Biol., 10, 579, 10.4161/rna.24341 Beck, 1996, Structure, tissue distribution and genomic organization of the murine RRM-type RNA binding proteins TIA-1 and TIAR, Nucleic Acids Res., 24, 3829, 10.1093/nar/24.19.3829 Tiscornia, 2006, Production and purification of lentiviral vectors, Nat. Protoc., 1, 241, 10.1038/nprot.2006.37 Kharraz, 2010, Impaired embryonic development in mice overexpressing the RNA-binding protein TIAR, PLoS One, 5, e11352, 10.1371/journal.pone.0011352 Baroni, 2008, Advances in RIP-chip analysis: RNA-binding protein immunoprecipitation-microarray profiling, Methods Mol. Biol., 419, 93, 10.1007/978-1-59745-033-1_6 Kuwano, 2008, MKP-1 mRNA stabilization and translational control by RNA-binding proteins HuR and NF90, Mol. Cell. Biol., 28, 4562, 10.1128/MCB.00165-08 Huang, 2009, Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources, Nat. Protoc., 4, 44, 10.1038/nprot.2008.211 Bakheet, 2001, ARED: human AU-rich element-containing mRNA database reveals an unexpectedly diverse functional repertoire of encoded proteins, Nucleic Acids Res., 29, 246, 10.1093/nar/29.1.246 Bakheet, 2006, ARED 3.0: the large and diverse AU-rich transcriptome, Nucleic Acids Res., 34, D111, 10.1093/nar/gkj052 Spasic, 2012, Genome-wide assessment of AU-rich elements by the AREScore algorithm, PLoS Genet., 80, e1002433, 10.1371/journal.pgen.1002433 Stoecklin, 2008, Genome-wide analysis identifies interleukin-10 mRNA as target of tristetraprolin, J. Biol. Chem., 283, 11689, 10.1074/jbc.M709657200 Kim, 2007, Elucidation of a C-rich signature motif in target mRNAs of RNA-binding protein TIAR, Mol. Cell. Biol., 27, 6806, 10.1128/MCB.01036-07 Liao, 2007, Competitive binding of AUF1 and TIAR to MYC mRNA controls its translation, Nat. Struct. Mol. Biol., 14, 511, 10.1038/nsmb1249 Mazan-Mamczarz, 2006, Translational repression by RNA-binding protein TIAR, Mol. Cell. Biol., 26, 2716, 10.1128/MCB.26.7.2716-2727.2006